Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_A20
(626 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 200 1e-52
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 200 1e-52
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 149 2e-37
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 89 4e-19
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 77 2e-15
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 76 4e-15
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 69 6e-13
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 41 2e-04
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 34 0.019
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 34 0.019
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 34 0.019
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 29 0.42
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 28 1.3
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S... 28 1.3
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 27 2.9
SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr 2|... 26 3.9
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 26 5.1
SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|c... 25 6.8
SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|ch... 25 9.0
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 200 bits (488), Expect = 1e-52
Identities = 101/161 (62%), Positives = 123/161 (76%), Gaps = 1/161 (0%)
Frame = +1
Query: 97 DEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDR 276
+E+R +M K N+RNMSVIAHVDHGKSTLTDSLV KAGII+ A+AG+ RF DTR DEQ+R
Sbjct: 7 EEVRNLMGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTRADEQER 66
Query: 277 CITIKSTAISMFFELEXKDLVFITNPDQREKSE-KGFLINLIDSPGHVDFSSEVTAALRV 453
+TIKSTAIS+F E+ D+ D +E ++ FL+NLIDSPGHVDFSSEVTAALRV
Sbjct: 67 GVTIKSTAISLFAEMTDDDM-----KDMKEPADGTDFLVNLIDSPGHVDFSSEVTAALRV 121
Query: 454 TDGALXXXXXXXXXXXQTETVLRQAIAERIKPILFMNKMDR 576
TDGAL QTETVLRQA+ ERI+P++ +NK+DR
Sbjct: 122 TDGALVVVDTIEGVCVQTETVLRQALGERIRPVVVVNKVDR 162
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 200 bits (488), Expect = 1e-52
Identities = 101/161 (62%), Positives = 123/161 (76%), Gaps = 1/161 (0%)
Frame = +1
Query: 97 DEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDR 276
+E+R +M K N+RNMSVIAHVDHGKSTLTDSLV KAGII+ A+AG+ RF DTR DEQ+R
Sbjct: 7 EEVRNLMGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTRADEQER 66
Query: 277 CITIKSTAISMFFELEXKDLVFITNPDQREKSE-KGFLINLIDSPGHVDFSSEVTAALRV 453
+TIKSTAIS+F E+ D+ D +E ++ FL+NLIDSPGHVDFSSEVTAALRV
Sbjct: 67 GVTIKSTAISLFAEMTDDDM-----KDMKEPADGTDFLVNLIDSPGHVDFSSEVTAALRV 121
Query: 454 TDGALXXXXXXXXXXXQTETVLRQAIAERIKPILFMNKMDR 576
TDGAL QTETVLRQA+ ERI+P++ +NK+DR
Sbjct: 122 TDGALVVVDTIEGVCVQTETVLRQALGERIRPVVVVNKVDR 162
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 149 bits (362), Expect = 2e-37
Identities = 81/160 (50%), Positives = 109/160 (68%)
Frame = +1
Query: 97 DEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDR 276
+++ + + NIRN +++AHVDHGK+TL DSL++ GII+ AG RF D R+DE R
Sbjct: 7 EKLVSLQKNQENIRNFTLLAHVDHGKTTLADSLLASNGIISSKLAGTVRFLDFREDEITR 66
Query: 277 CITIKSTAISMFFELEXKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVT 456
IT+KS+AIS+FF++ I+ D++ + EK +LINLIDSPGHVDFSSEV++A R+
Sbjct: 67 GITMKSSAISLFFKV-------ISQNDEK-RVEKDYLINLIDSPGHVDFSSEVSSASRLC 118
Query: 457 DGALXXXXXXXXXXXQTETVLRQAIAERIKPILFMNKMDR 576
DGA QT TVLRQA +RIK IL +NKMDR
Sbjct: 119 DGAFVLVDAVEGVCSQTITVLRQAWIDRIKVILVINKMDR 158
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 89.4 bits (212), Expect = 4e-19
Identities = 60/160 (37%), Positives = 84/160 (52%), Gaps = 7/160 (4%)
Frame = +1
Query: 118 DKKR--NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARA--GETRF---TDTRKDEQDR 276
DKKR IRN+ + AH+D GK+T T+ ++ G I G+ D + E+++
Sbjct: 52 DKKRLKQIRNIGISAHIDSGKTTFTERVLYYTGRIKDIHEVRGKDNVGAKMDFMELEREK 111
Query: 277 CITIKSTAISMFFELEXKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVT 456
ITI+S A +E + N Q+ EK + IN+ID+PGH+DF+ EV ALRV
Sbjct: 112 GITIQSAATHCTWERTVDQIE--ANEKQKTDFEKSYNINIIDTPGHIDFTIEVERALRVL 169
Query: 457 DGALXXXXXXXXXXXQTETVLRQAIAERIKPILFMNKMDR 576
DGA+ QT TV RQ + I F+NKMDR
Sbjct: 170 DGAVLVLCAVSGVQSQTITVDRQMRRYNVPRISFVNKMDR 209
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 77.4 bits (182), Expect = 2e-15
Identities = 55/151 (36%), Positives = 78/151 (51%), Gaps = 2/151 (1%)
Frame = +1
Query: 130 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFT--DTRKDEQDRCITIKSTAI 303
+IRN+ +IAH+D GK+TLT+ ++ G + +T T D E+ R ITI S AI
Sbjct: 27 SIRNVGIIAHIDAGKTTLTEKMLYYGGFTSHFGNVDTGDTVMDYLPAERQRGITINSAAI 86
Query: 304 SMFFELEXKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXX 483
S + +QR INLID+PGH DF+ EV ++ V DGA+
Sbjct: 87 SFTWR------------NQR--------INLIDTPGHADFTFEVERSVAVLDGAVAIIDG 126
Query: 484 XXXXXXQTETVLRQAIAERIKPILFMNKMDR 576
QT+ V +QA I ++F+NKMDR
Sbjct: 127 SAGVEAQTKVVWKQATKRGIPKVIFVNKMDR 157
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 76.2 bits (179), Expect = 4e-15
Identities = 49/157 (31%), Positives = 79/157 (50%)
Frame = +1
Query: 103 IRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCI 282
+RG+ + +RN +VIAH+DHGKSTL+D ++ G+I +F D + E+ R I
Sbjct: 50 VRGIPQNR--VRNWAVIAHIDHGKSTLSDCILKLTGVI-NEHNFRNQFLDKLEVERRRGI 106
Query: 283 TIKSTAISMFFELEXKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDG 462
T+K+ SM + + +L+NLID+PGHVDF +EV +L +G
Sbjct: 107 TVKAQTCSMIYYYHG----------------QSYLLNLIDTPGHVDFRAEVMHSLAACEG 150
Query: 463 ALXXXXXXXXXXXQTETVLRQAIAERIKPILFMNKMD 573
+ QT + A ++ + I +NK+D
Sbjct: 151 CILLVDASQGIQAQTLSNFYMAFSQNLVIIPVLNKVD 187
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 68.9 bits (161), Expect = 6e-13
Identities = 46/157 (29%), Positives = 75/157 (47%), Gaps = 1/157 (0%)
Frame = +1
Query: 109 GMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGI-IAGARAGETRFTDTRKDEQDRCIT 285
G++ ++R+ V H+ HGKS L D LV + R+TDT E++R ++
Sbjct: 132 GLLTGTDDVRSFIVAGHLHHGKSALLDLLVYYTHPDTKPPKRRSLRYTDTHYLERERVMS 191
Query: 286 IKSTAISMFFELEXKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGA 465
IKST +++ D + K+ F ID+PGHVDF EV A + ++DG
Sbjct: 192 IKSTPLTLAVS------------DMKGKT---FAFQCIDTPGHVDFVDEVAAPMAISDGV 236
Query: 466 LXXXXXXXXXXXQTETVLRQAIAERIKPILFMNKMDR 576
+ T +++ AI + +L +NK+DR
Sbjct: 237 VLVVDVIEGVMINTTRIIKHAILHDMPIVLVLNKVDR 273
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 40.7 bits (91), Expect = 2e-04
Identities = 39/152 (25%), Positives = 63/152 (41%), Gaps = 1/152 (0%)
Frame = +1
Query: 121 KKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTA 300
KK ++ N+ I HVDHGK+TLT ++ + A + D +E+ R ITI S
Sbjct: 50 KKPHV-NIGTIGHVDHGKTTLTAAITKCLSDLGQASFMDYSQIDKAPEEKARGITISSAH 108
Query: 301 ISMFFELEXKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXX 480
+ + E + + + +D PGH D+ + DGA+
Sbjct: 109 V------------------EYETANRHYA--HVDCPGHADYIKNMITGAATMDGAIIVVS 148
Query: 481 XXXXXXXQTETVLRQAIAERIKPI-LFMNKMD 573
QT L A +K I +++NK+D
Sbjct: 149 ATDGQMPQTREHLLLARQVGVKQIVVYINKVD 180
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 33.9 bits (74), Expect = 0.019
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +1
Query: 115 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 210
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCG 32
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 33.9 bits (74), Expect = 0.019
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +1
Query: 115 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 210
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCG 32
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 33.9 bits (74), Expect = 0.019
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +1
Query: 115 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 210
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCG 32
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 29.5 bits (63), Expect = 0.42
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Frame = +1
Query: 142 MSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETR----FTDTRKDEQDRCITIKSTAISM 309
++++ HVDHGK+TL D+ K+ I + G T+ FT D+ + IT T M
Sbjct: 174 VTLMGHVDHGKTTLLDAF-RKSTIASTEHGGITQKIGAFT-VPFDKGSKFITFLDTPGHM 231
Query: 310 FFELEXK 330
FE K
Sbjct: 232 AFEAMRK 238
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 27.9 bits (59), Expect = 1.3
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +1
Query: 85 ISRLDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSL 195
IS L I + ++ N+ I HV HGKST+ ++
Sbjct: 7 ISELSPIHPAIISRQATINIGTIGHVAHGKSTVVKAI 43
>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 971
Score = 27.9 bits (59), Expect = 1.3
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = +2
Query: 476 LTVCLVCVYKLKQYCVRLLPSASSLFCS*TKWTVLFLSSNLKLKN 610
L V + YKL+ RL +A S+ C WT LF SN+ +N
Sbjct: 348 LNVIGIAAYKLEDPVHRLFVTAFSVCCECLAWTSLF--SNISPEN 390
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 26.6 bits (56), Expect = 2.9
Identities = 28/119 (23%), Positives = 51/119 (42%), Gaps = 15/119 (12%)
Frame = +1
Query: 139 NMSVIAHVDHGKSTLTDSLVSKAGII----------AGARAGETRF-----TDTRKDEQD 273
N+ I HVD GKSTL +++ G++ AG+ + D+ +E++
Sbjct: 240 NIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEERE 299
Query: 274 RCITIKSTAISMFFELEXKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALR 450
+ T++ +FE E + + P KG++ N+I+ D V +A R
Sbjct: 300 KGKTVE--VGRAYFETEHRRFSLLDAP-----GHKGYVTNMINGASQADIGVLVISARR 351
>SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr
2|||Manual
Length = 207
Score = 26.2 bits (55), Expect = 3.9
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = -1
Query: 428 EEKSTCPGESIKLIKKPFSLFSRWSGFVMNTKSFXS-SSKNIEMAVDLMVMQRSCSSLRV 252
EE + P + K KK S F+ T S S++NI+ A+DL+ + S S ++
Sbjct: 66 EEMESLPSKGGKGSKKAAKKNSSLDAFLNETPQTASYSARNIDDALDLLSLNNSSSKDKI 125
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 25.8 bits (54), Expect = 5.1
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Frame = -1
Query: 518 STVSVCTHTPDTQSTT-TRAPSVTRSAAVTSEEKSTCPGESIKLIKKPFSLFSRWSGFVM 342
+T S + +P + STT T +PS + S++ +S S+ S S S S
Sbjct: 135 TTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 194
Query: 341 NTKSFXSSSKNIEMAV 294
++ S SSS + + +
Sbjct: 195 SSSSSSSSSSSSSVPI 210
Score = 25.0 bits (52), Expect = 9.0
Identities = 18/71 (25%), Positives = 32/71 (45%)
Frame = -1
Query: 521 RSTVSVCTHTPDTQSTTTRAPSVTRSAAVTSEEKSTCPGESIKLIKKPFSLFSRWSGFVM 342
++TVS + + T S+++ +PS + + TS S+ S S S S
Sbjct: 124 QTTVSSSSVSSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSS 183
Query: 341 NTKSFXSSSKN 309
++ S SSS +
Sbjct: 184 SSSSSSSSSSS 194
>SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 566
Score = 25.4 bits (53), Expect = 6.8
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +2
Query: 164 ITASQPSRTRWFPR-PVSLLVREPERPVSLTRVRTNK 271
+T S T + P P S + REP P+S R+R+++
Sbjct: 48 LTPEPSSNTFYAPSSPASAVRREPLSPMSFVRMRSHR 84
>SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 525
Score = 25.0 bits (52), Expect = 9.0
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +1
Query: 247 TDTRKDEQDRCITIKSTAISMFFELEXKDLVFITNPD 357
T RK Q+ I I+ A FEL+ D + +TNPD
Sbjct: 61 TKWRKAMQNNSIPIQDLADD--FELDFPDTLDLTNPD 95
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,356,383
Number of Sequences: 5004
Number of extensions: 44299
Number of successful extensions: 159
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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