Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_A20
(626 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 256 1e-68
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) 49 2e-09
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0) 58 4e-09
SB_35448| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-10) 44 1e-04
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.007
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018) 33 0.25
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34) 31 0.58
SB_42973| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_36714| Best HMM Match : RBM1CTR (HMM E-Value=0.72) 29 4.1
SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_11602| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_24314| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 256 bits (626), Expect = 1e-68
Identities = 129/176 (73%), Positives = 140/176 (79%)
Frame = +1
Query: 97 DEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDR 276
D+IRG+MDKK NIRNMSVIAHVDHGKSTLTDSLVSKAGIIA A+AGETRFTDTRKDEQDR
Sbjct: 6 DQIRGIMDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAAAKAGETRFTDTRKDEQDR 65
Query: 277 CITIKSTAISMFFELEXKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVT 456
CITIKSTAIS+++EL D +IT P ++ E+GFLINLIDSPGHVDFSSEVTAALRVT
Sbjct: 66 CITIKSTAISLYYELPESDFEYITQP--KDPKERGFLINLIDSPGHVDFSSEVTAALRVT 123
Query: 457 DGALXXXXXXXXXXXQTETVLRQAIAERIKPILFMNKMDRXXXXXXXXXXXXYXTF 624
DGAL QTETVLRQAIAERIKP+LFMNKMDR Y TF
Sbjct: 124 DGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRALLELQLDQEDLYQTF 179
>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2670
Score = 48.8 bits (111), Expect(2) = 2e-09
Identities = 23/54 (42%), Positives = 36/54 (66%)
Frame = +1
Query: 133 IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKS 294
+RN S++AHVDHGKSTL D L+ G I+ + + + D + E++R IT+K+
Sbjct: 1941 VRNFSIVAHVDHGKSTLADRLLEVTGTISKS-SDNKQVLDKLQVERERGITVKA 1993
Score = 30.3 bits (65), Expect(2) = 2e-09
Identities = 17/59 (28%), Positives = 26/59 (44%)
Frame = +1
Query: 397 IDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAIAERIKPILFMNKMD 573
+ + GHVDFS EV+ +L G + QT + A + I +NK+D
Sbjct: 1991 VKAQGHVDFSYEVSRSLAACQGVVLLVDAAQGVQAQTVSNFFLAFNSELTIIPALNKID 2049
>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 359
Score = 58.4 bits (135), Expect = 4e-09
Identities = 43/153 (28%), Positives = 68/153 (44%)
Frame = +1
Query: 118 DKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKST 297
D+ + R +I+H D GK+TLT+ L+ G I A A ++ IK
Sbjct: 5 DEIKRRRTFGIISHPDAGKTTLTEKLLLFGGAIQEAGAVKSN-------------KIKKG 51
Query: 298 AISMFFELEXKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXX 477
A S F E+E + + + + + IN++D+PGH DF+ + L D +
Sbjct: 52 ATSDFMEIERQRGISVAT-SVLAFNYRDKKINILDTPGHKDFAEDTFRTLTAVDSVIVVI 110
Query: 478 XXXXXXXXQTETVLRQAIAERIKPILFMNKMDR 576
QTE ++ I I+F+NKMDR
Sbjct: 111 DVAKGVEEQTEKLVEVCRMRNIPMIVFINKMDR 143
>SB_35448| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-10)
Length = 563
Score = 44.0 bits (99), Expect = 1e-04
Identities = 22/51 (43%), Positives = 30/51 (58%)
Frame = +1
Query: 424 SSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAIAERIKPILFMNKMDR 576
+ +V+ A+R+ DGAL QT VLRQA E I+P L +NK+DR
Sbjct: 21 AGKVSTAVRLCDGALVVVDVVEGVSPQTHVVLRQAWLENIRPCLVLNKIDR 71
Score = 44.0 bits (99), Expect = 1e-04
Identities = 22/49 (44%), Positives = 29/49 (59%)
Frame = +1
Query: 430 EVTAALRVTDGALXXXXXXXXXXXQTETVLRQAIAERIKPILFMNKMDR 576
+V+ A+R+ DGAL QT VLRQA E I+P L +NK+DR
Sbjct: 93 QVSTAVRLCDGALVVVDVVEGVSPQTHVVLRQAWLENIRPCLVLNKIDR 141
>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 545
Score = 37.9 bits (84), Expect = 0.007
Identities = 21/70 (30%), Positives = 32/70 (45%)
Frame = +1
Query: 367 KSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAIAERIK 546
K G I ID+PGH F+S VTD + QT +R A+ ++
Sbjct: 71 KLPSGEKITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDGVKTQTVESIRHAMHAKVP 130
Query: 547 PILFMNKMDR 576
I+ +NK+D+
Sbjct: 131 LIVAINKIDK 140
Score = 32.7 bits (71), Expect = 0.25
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +1
Query: 142 MSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETR 243
++++ HVDHGK+TL D+L + + AG G T+
Sbjct: 31 VTIMGHVDHGKTTLLDAL-RNSSVAAGEAGGITQ 63
>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
Length = 106
Score = 32.7 bits (71), Expect = 0.25
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +1
Query: 115 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 210
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCG 32
>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
Length = 240
Score = 31.5 bits (68), Expect = 0.58
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +1
Query: 142 MSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETR 243
++V+ HVDHGK++L D + A +I G G T+
Sbjct: 94 VTVMGHVDHGKTSLLD-YIRNANVIEGESGGITQ 126
Score = 31.5 bits (68), Expect = 0.58
Identities = 17/63 (26%), Positives = 29/63 (46%)
Frame = +1
Query: 388 INLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAIAERIKPILFMNK 567
I +D+PGH F++ +VTD + QT+ + A A + I +NK
Sbjct: 140 IAFLDTPGHEAFTAMRARGAQVTDLVIIVVAADDDVMPQTKEAISHAQAAGVPIIFAINK 199
Query: 568 MDR 576
+D+
Sbjct: 200 IDK 202
>SB_42973| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1864
Score = 28.7 bits (61), Expect = 4.1
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Frame = -1
Query: 500 THTPDTQSTTTRAPSVTRSAAVTSEEKSTCPGESIKL---IKKPFSLFSRWSG 351
TH+P + TTT AP+ E C G+ ++L K +L R+ G
Sbjct: 612 THSPSSTPTTTGAPTTAGFNEFNLEASEDCTGDYVELRDGDSKSAALIGRYCG 664
>SB_36714| Best HMM Match : RBM1CTR (HMM E-Value=0.72)
Length = 300
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -1
Query: 461 PSVTRSAAVTSEEKSTCPGESIKLIKKPFSLFSRWSGFVMN 339
P R A TCPGE ++L+ + +RWS V+N
Sbjct: 242 PPPERQALACLRHTHTCPGEQLRLVGQ-LGHRARWSSSVIN 281
>SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3292
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = -1
Query: 518 STVSVCTHTPDTQSTTTRAPSVTRSAAVTSEEKSTCPGESIKLIKKP 378
ST+ T + STTT A ++ TS + E+ + IKKP
Sbjct: 2817 STIGTSRPTSEAFSTTTAATGTIPDSSATSATEGLSDAETEEFIKKP 2863
>SB_11602| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 440
Score = 28.7 bits (61), Expect = 4.1
Identities = 16/29 (55%), Positives = 19/29 (65%)
Frame = -1
Query: 500 THTPDTQSTTTRAPSVTRSAAVTSEEKST 414
T TP+TQSTTT P T+S T E +ST
Sbjct: 346 TETPETQSTTT-TPE-TQSTTTTPETQST 372
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/29 (55%), Positives = 19/29 (65%)
Frame = -1
Query: 500 THTPDTQSTTTRAPSVTRSAAVTSEEKST 414
T TP+TQSTTT P T+S T E +ST
Sbjct: 391 TETPETQSTTT-TPE-TQSTTGTPETQST 417
>SB_24314| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 453
Score = 27.9 bits (59), Expect = 7.1
Identities = 9/32 (28%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Frame = -3
Query: 507 SLYTHTRHTVNNHKGSIS-DTECSCYFRREIN 415
S Y+ + HT+N+H+ + + +T C+C ++ ++
Sbjct: 192 SPYSLSHHTINSHRKAYNEETSCTCRYKEGVS 223
>SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 809
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/56 (23%), Positives = 27/56 (48%)
Frame = +1
Query: 94 LDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRK 261
++ + +MD IRN+++ H+ GK+ D L + A+ G+ +T +
Sbjct: 117 IEYLADLMDNPELIRNVALAGHLHSGKTAFLDCLFEQTHPELEAKEGKEVMLNTER 172
>SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2735
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/66 (24%), Positives = 29/66 (43%)
Frame = +1
Query: 79 W*ISRLDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTR 258
W + +L+E R KK+ + HG + T ++ G+ G + +F+ T
Sbjct: 1047 WCLEKLEEKR-KRSKKQAEKVSKGTRKASHGVAKATRGGLANRGVFQGRGISDEKFSITS 1105
Query: 259 KDEQDR 276
+EQ R
Sbjct: 1106 SEEQQR 1111
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,282,831
Number of Sequences: 59808
Number of extensions: 363249
Number of successful extensions: 1224
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1051
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1214
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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