Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_A19
         (652 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    25   0.71 
AM712904-1|CAN84643.1|   86|Tribolium castaneum hypothetical pro...    23   2.9  
AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           21   6.7  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 24.6 bits (51), Expect = 0.71
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = -1

Query: 259  PSQRFLPRTRPSSLQAYLAFRGLELSSNSHILSLSTHS 146
            PS    PRTR        A + +E+SSNS  L LS  S
Sbjct: 1478 PSDTLNPRTRGEKPIVPSAEKFIEVSSNSITLHLSAWS 1515


>AM712904-1|CAN84643.1|   86|Tribolium castaneum hypothetical
           protein protein.
          Length = 86

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +2

Query: 266 LQIKCPFYVWSIIQQCPIVRWPR 334
           LQ+    +V S I   P+ RWP+
Sbjct: 1   LQVDMQLFVLSPIILIPLFRWPK 23


>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = +3

Query: 489 QSKKPXGKLHSRRGVNQPNNNSLKWHLKSHF 581
           QSK+P      R  V   NN+ L+   K  F
Sbjct: 45  QSKRPLAPAPERTSVLVTNNSDLRCKRKIQF 75


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,412
Number of Sequences: 336
Number of extensions: 3253
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16760905
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)