Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_A19
(652 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC144.16 |||DUF59 family protein|Schizosaccharomyces pombe|chr... 107 1e-24
SPBC651.03c |gyp10||GTPase activating protein Gyp10|Schizosaccha... 30 0.33
SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|ch... 29 0.58
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa... 29 0.77
SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual 27 1.8
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 26 4.1
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 26 5.4
SPAC1F5.05c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 5.4
SPBC19F8.02 |||nuclear distribution protein NUDC |Schizosaccharo... 26 5.4
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T... 26 5.4
SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces po... 25 7.2
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc... 25 7.2
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos... 25 7.2
SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit S... 25 9.5
>SPAC144.16 |||DUF59 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 179
Score = 107 bits (258), Expect = 1e-24
Identities = 53/121 (43%), Positives = 74/121 (61%)
Frame = +1
Query: 160 ETIYDYLRTIRDPEKPNTLEDLKVVYEEGIFVKEPTADKVPVLRVEYNPTVPHCSLATLI 339
+ IYD L I DPE P TL L VV E I V + + + V PT+PHCS+ TLI
Sbjct: 57 QEIYDLLAKINDPEHPLTLAQLSVVKLEDIEVVD-NVEGDSYITVHITPTIPHCSMCTLI 115
Query: 340 GLCIRIKILRSIHHPVKLDIFIKKGAHTTEXEINKQINDXERIAAAMENPNLRNLXENCI 519
GLCIR+++ R + +D+ +KKG H +E ++NKQ+ND ER+AAA EN L ++ +
Sbjct: 116 GLCIRVRLERCLPPRFHVDVKVKKGTHASESQVNKQLNDKERVAAACENEQLLSVLNGMM 175
Query: 520 A 522
A
Sbjct: 176 A 176
>SPBC651.03c |gyp10||GTPase activating protein
Gyp10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 373
Score = 29.9 bits (64), Expect = 0.33
Identities = 14/45 (31%), Positives = 26/45 (57%)
Frame = -2
Query: 279 HFICSWFLHKDSFLVHDLQVFKRIWLFGVSNCPQIVIYCLSQLIL 145
+F SW + + V D+ V R++ F +S+ P V+Y +Q++L
Sbjct: 189 YFALSWLITWFAHDVSDISVVCRLFDFFISSHPLTVVYTCAQVVL 233
>SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 471
Score = 29.1 bits (62), Expect = 0.58
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = -2
Query: 594 SVIFENATSGAILENCCWVDLLLFGYAVFXQV 499
S I+ TSG L WV L LFG+A F +V
Sbjct: 215 SDIWNEYTSGNWLMAFIWVGLFLFGFACFREV 246
>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1029
Score = 28.7 bits (61), Expect = 0.77
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +1
Query: 139 KDENELRET-IYDYLRTIRDPEKPNTLEDLKVVYEEGIFVKEPTADKVPVLRVEYN 303
K + + RE IY Y ++ R + NTLED+K + EP D V +V +N
Sbjct: 65 KFKQDFRERWIYKYTKSGRTSIRFNTLEDIKCSISLLVLFAEPDIDLPFVSQVAHN 120
>SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 366
Score = 27.5 bits (58), Expect = 1.8
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +1
Query: 148 NELRETIYDYLRTIRDPEKPNTLE 219
+EL+ET++DYL +R +P LE
Sbjct: 278 DELKETMWDYLNLVRVYTRPRGLE 301
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 26.2 bits (55), Expect = 4.1
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -1
Query: 298 TPHVKRALYLQLV-PSQRFLPRTRPSSLQAYLAF 200
TP + Y ++V PS+ F P P+SLQA L F
Sbjct: 984 TPLRPNSQYQEIVRPSRHFNPLKVPASLQAQLPF 1017
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 25.8 bits (54), Expect = 5.4
Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 5/81 (6%)
Frame = +1
Query: 79 VEVAKPAYMDKSATLQELGYKDENELRETIYDYLRTIRDPEKPNTLEDLK----VVYEEG 246
V+ +KP + Q GY D + R + + + DPE + L G
Sbjct: 573 VKDSKPESLGIDTVKQYTGYLDVEDDRHLFFWFFESRNDPENDPVVLWLNGGPGCSSLTG 632
Query: 247 IFVK-EPTADKVPVLRVEYNP 306
+F++ P++ + L+ EYNP
Sbjct: 633 LFMELGPSSINIETLKPEYNP 653
>SPAC1F5.05c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 151
Score = 25.8 bits (54), Expect = 5.4
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 163 TIYDYLRTIRDPEKPNTLEDLKV 231
+I + IRDPE NT+ED V
Sbjct: 6 SISSKINRIRDPESDNTIEDTHV 28
>SPBC19F8.02 |||nuclear distribution protein NUDC
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 25.8 bits (54), Expect = 5.4
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2
Query: 524 KRSKSTQQQFSKMAPEVAFSNITDK 598
++ K Q F K PE+ FSN+ D+
Sbjct: 141 QKRKDVLQNFMKQHPELDFSNVRDQ 165
>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 988
Score = 25.8 bits (54), Expect = 5.4
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +2
Query: 44 PNYL*TTLQNSQWRSLSPHIWTKVLHY 124
PNYL + L++ W+ L I + +HY
Sbjct: 135 PNYLISILESKNWQLLLEIIGSDAMHY 161
>SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 674
Score = 25.4 bits (53), Expect = 7.2
Identities = 9/33 (27%), Positives = 19/33 (57%)
Frame = +1
Query: 136 YKDENELRETIYDYLRTIRDPEKPNTLEDLKVV 234
+ +NE+ ++IY L T E + +E+L ++
Sbjct: 456 FNQDNEINDSIYKILSTCSTEEWDSAMEELNIL 488
>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 745
Score = 25.4 bits (53), Expect = 7.2
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +1
Query: 73 QPVEVAKPAYMDKSATLQELGYKDENELRETIYDYLR-TIRDPEKPNTLEDLKVVYE 240
+ +E+ P Y ++ D+ +T+ Y R T+ +P P+T DLK + E
Sbjct: 208 EKLEIIHPYYHRICTLFPQMNDWDKVVALKTLVRYARLTLPEPSTPSTHSDLKELLE 264
>SPCC1450.11c |cek1||serine/threonine protein kinase
Cek1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1338
Score = 25.4 bits (53), Expect = 7.2
Identities = 9/32 (28%), Positives = 19/32 (59%)
Frame = +1
Query: 241 EGIFVKEPTADKVPVLRVEYNPTVPHCSLATL 336
+ + V+ P ++K + YNP++ +CS A +
Sbjct: 330 DSLRVQSPRSEKATIELDNYNPSLENCSSAVI 361
>SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit
Sfc6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 582
Score = 25.0 bits (52), Expect = 9.5
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Frame = +1
Query: 283 VLRVEYNPT--VPHCSLATLIGLCI--RIKILRSIHHPVKLDIFIKKGAHT 423
VL++E+ PT V L L +C ++++LR PVK +F+++ T
Sbjct: 273 VLQLEWCPTISVEDSILGFLAVVCSDGKLRVLRVPRSPVKFHVFVEQADFT 323
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,652,932
Number of Sequences: 5004
Number of extensions: 54073
Number of successful extensions: 178
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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