Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_A19
(652 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1015 - 30115377-30115477,30115570-30115615,30116491-301165... 122 3e-28
04_04_1008 - 30054674-30054774,30054867-30054912,30055788-300558... 122 3e-28
03_06_0138 + 31940606-31940708,31940792-31940897,31941739-319418... 119 2e-27
04_01_0190 - 2234038-2234674,2237128-2237665,2239294-2239378 31 1.1
05_03_0087 + 8286700-8288088 29 2.4
01_06_1663 + 38980710-38981052,38981826-38982967 28 7.4
02_05_0689 - 30937621-30937665,30938143-30938208,30938303-309383... 27 9.8
>04_04_1015 - 30115377-30115477,30115570-30115615,30116491-30116590,
30116676-30116771,30119519-30119556,30119623-30119733,
30119820-30119951,30120024-30120263,30120532-30120700,
30120994-30121493,30121581-30121691,30121802-30122133,
30122603-30122737,30122839-30122988,30123809-30123947
Length = 799
Score = 122 bits (293), Expect = 3e-28
Identities = 55/119 (46%), Positives = 84/119 (70%)
Frame = +1
Query: 166 IYDYLRTIRDPEKPNTLEDLKVVYEEGIFVKEPTADKVPVLRVEYNPTVPHCSLATLIGL 345
+ D R I+DPE P +LE+L VV E+ + + D++ +RV + PTV CS+AT+IGL
Sbjct: 681 VADSKRDIKDPEHPYSLEELNVVTEDSVEIN----DELSHVRVTFTPTVERCSMATVIGL 736
Query: 346 CIRIKILRSIHHPVKLDIFIKKGAHTTEXEINKQINDXERIAAAMENPNLRNLXENCIA 522
C+R+K++RS+ K+DI + G+H TE +NKQ+ND ER+AAA+ENPNL ++ E C++
Sbjct: 737 CLRVKLMRSLPPRYKVDIRVAPGSHATETAVNKQLNDKERVAAALENPNLLDIVEECLS 795
>04_04_1008 - 30054674-30054774,30054867-30054912,30055788-30055887,
30055973-30056068,30058816-30058853,30058920-30059030,
30059117-30059248,30059321-30059560,30059829-30059997,
30060291-30060790,30060878-30060988,30061099-30061430,
30061900-30062034,30062136-30062285,30063106-30063244
Length = 799
Score = 122 bits (293), Expect = 3e-28
Identities = 55/119 (46%), Positives = 84/119 (70%)
Frame = +1
Query: 166 IYDYLRTIRDPEKPNTLEDLKVVYEEGIFVKEPTADKVPVLRVEYNPTVPHCSLATLIGL 345
+ D R I+DPE P +LE+L VV E+ + + D++ +RV + PTV CS+AT+IGL
Sbjct: 681 VADSKRDIKDPEHPYSLEELNVVTEDSVEIN----DELSHVRVTFTPTVERCSMATVIGL 736
Query: 346 CIRIKILRSIHHPVKLDIFIKKGAHTTEXEINKQINDXERIAAAMENPNLRNLXENCIA 522
C+R+K++RS+ K+DI + G+H TE +NKQ+ND ER+AAA+ENPNL ++ E C++
Sbjct: 737 CLRVKLMRSLPPRYKVDIRVAPGSHATETAVNKQLNDKERVAAALENPNLLDIVEECLS 795
>03_06_0138 +
31940606-31940708,31940792-31940897,31941739-31941838,
31942913-31942958,31943580-31943689
Length = 154
Score = 119 bits (286), Expect = 2e-27
Identities = 53/118 (44%), Positives = 82/118 (69%)
Frame = +1
Query: 166 IYDYLRTIRDPEKPNTLEDLKVVYEEGIFVKEPTADKVPVLRVEYNPTVPHCSLATLIGL 345
++D +R I+DPE P +LE L V+ EE + V E K+ +++ + PTV HCS+AT+IGL
Sbjct: 33 VFDTVRDIKDPEHPYSLEQLSVLSEESVSVDE----KLGRIQITFTPTVQHCSMATVIGL 88
Query: 346 CIRIKILRSIHHPVKLDIFIKKGAHTTEXEINKQINDXERIAAAMENPNLRNLXENCI 519
C+R+K++++ K+DI + G+ E +NKQ+ND ER+AAA+ENPNLR L + C+
Sbjct: 89 CLRLKLMQNFPPHFKIDIKVAPGSLANEESVNKQLNDKERVAAALENPNLRQLVDECL 146
>04_01_0190 - 2234038-2234674,2237128-2237665,2239294-2239378
Length = 419
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Frame = -2
Query: 315 GHCWIILHT*NGHFICSWFL---HKDSFLVHDL 226
GH W I+H F+C WF +K+ FLVH+L
Sbjct: 157 GHSWNIIH-----FMCGWFWNTENKELFLVHEL 184
>05_03_0087 + 8286700-8288088
Length = 462
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +3
Query: 477 NGESQSKKPXGKLHSRRGVNQPNN 548
NGES+ KK K ++ G N+PNN
Sbjct: 281 NGESKEKKDEHKEYNDNGTNKPNN 304
>01_06_1663 + 38980710-38981052,38981826-38982967
Length = 494
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/51 (21%), Positives = 28/51 (54%)
Frame = -2
Query: 627 KNFVNFVNSFLSVIFENATSGAILENCCWVDLLLFGYAVFXQVS*IGILHC 475
+ +NF+ + +I N+ ++ CCW+++LL ++ + + +L+C
Sbjct: 262 QRLLNFLRALGKLIKLNSQCKEMVFPCCWLEVLLSAHSDHISLDELVLLNC 312
>02_05_0689 -
30937621-30937665,30938143-30938208,30938303-30938356,
30938489-30938560,30938648-30938743,30939883-30939960,
30940485-30940564,30940662-30941343
Length = 390
Score = 27.5 bits (58), Expect = 9.8
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Frame = +1
Query: 76 PVE-VAKPAYMDKSATLQELGYKD-ENELRETIYDYLRTIRDPEKPNTLEDLKVVYEEGI 249
P+E V K AT EL KD E E+R+ + D + ++ P+T E VY +G
Sbjct: 316 PIERVRKLILAHDLATAAEL--KDMEKEIRKEVDDAIAKAKESPMPDTSELFTNVYVKGF 373
Query: 250 FVKEPTADK 276
V+ AD+
Sbjct: 374 GVESFGADR 382
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,054,317
Number of Sequences: 37544
Number of extensions: 315198
Number of successful extensions: 709
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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