Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_A19
(652 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_17381| Best HMM Match : No HMM Matches (HMM E-Value=.) 109 1e-24
SB_41741| Best HMM Match : DUF59 (HMM E-Value=6.1e-08) 65 4e-11
SB_46539| Best HMM Match : Keratin_B2 (HMM E-Value=1.2) 31 0.62
SB_34447| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_42611| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_38239| Best HMM Match : YopE (HMM E-Value=7.2) 29 2.5
SB_27352| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_47853| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_12852| Best HMM Match : Mic1 (HMM E-Value=0.32) 29 2.5
SB_9628| Best HMM Match : SOCS_box (HMM E-Value=6.3e-11) 29 4.3
>SB_17381| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 115
Score = 109 bits (263), Expect = 1e-24
Identities = 52/114 (45%), Positives = 79/114 (69%)
Frame = +1
Query: 178 LRTIRDPEKPNTLEDLKVVYEEGIFVKEPTADKVPVLRVEYNPTVPHCSLATLIGLCIRI 357
+R+I DPE P TLE+L VV + I V +D ++V++ PT+PHCS+ATLIGL IR+
Sbjct: 2 IRSINDPEHPLTLEELNVVEQALIDV----SDDESYVKVQFTPTIPHCSMATLIGLAIRV 57
Query: 358 KILRSIHHPVKLDIFIKKGAHTTEXEINKQINDXERIAAAMENPNLRNLXENCI 519
++LRS+ K+D+ I G H +E +NKQ+ D ER+AAA+EN +L ++ + C+
Sbjct: 58 RLLRSLPDRFKVDVKITPGTHQSEIAVNKQLADKERVAAALENNHLLDVIDQCL 111
>SB_41741| Best HMM Match : DUF59 (HMM E-Value=6.1e-08)
Length = 476
Score = 65.3 bits (152), Expect = 4e-11
Identities = 35/71 (49%), Positives = 49/71 (69%)
Frame = +1
Query: 142 DENELRETIYDYLRTIRDPEKPNTLEDLKVVYEEGIFVKEPTADKVPVLRVEYNPTVPHC 321
D+ + RE I+D +R+I DPE P TLE+L VV + I V +D ++V++ PT+PHC
Sbjct: 411 DKIDDRE-IFDMIRSINDPEHPLTLEELNVVEQALIDV----SDDESYVKVQFTPTIPHC 465
Query: 322 SLATLIGLCIR 354
S+ATLIGL IR
Sbjct: 466 SMATLIGLAIR 476
>SB_46539| Best HMM Match : Keratin_B2 (HMM E-Value=1.2)
Length = 300
Score = 31.5 bits (68), Expect = 0.62
Identities = 16/42 (38%), Positives = 26/42 (61%)
Frame = -2
Query: 564 AILENCCWVDLLLFGYAVFXQVS*IGILHCSCNPLXVVDLLI 439
A++ CC+VD+LL YAV +S + +L C + VD+L+
Sbjct: 196 AVMSICCYVDMLLCRYAV---MSCVDMLLCRYAAMLCVDMLL 234
>SB_34447| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 119
Score = 30.3 bits (65), Expect = 1.4
Identities = 19/69 (27%), Positives = 34/69 (49%)
Frame = -1
Query: 337 LAWPANNGALLDYTPHVKRALYLQLVPSQRFLPRTRPSSLQAYLAFRGLELSSNSHILSL 158
L W N AL+++T R +L+ S ++P + L A L + +E+ + SH++ L
Sbjct: 44 LVWLGNQSALVNHTLLQSRYSHLKTKVSILYIPNSIKDILLASLN-QPMEMGAFSHLVLL 102
Query: 157 STHSRLCSR 131
+C R
Sbjct: 103 VVDESVCGR 111
>SB_42611| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 684
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/45 (33%), Positives = 28/45 (62%)
Frame = +1
Query: 82 EVAKPAYMDKSATLQELGYKDENELRETIYDYLRTIRDPEKPNTL 216
EV++ A++ S+T + + ++ENE +E I D L T + + NT+
Sbjct: 553 EVSEQAHVTASSTKESVPEENENEEKEGIDDDLETHCESDTTNTI 597
>SB_38239| Best HMM Match : YopE (HMM E-Value=7.2)
Length = 247
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/45 (33%), Positives = 28/45 (62%)
Frame = +1
Query: 82 EVAKPAYMDKSATLQELGYKDENELRETIYDYLRTIRDPEKPNTL 216
EV++ A++ S+T + + ++ENE +E I D L T + + NT+
Sbjct: 116 EVSEQAHVTASSTKESVPEENENEEKEGIDDDLETHCESDTTNTI 160
>SB_27352| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 190
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/45 (33%), Positives = 28/45 (62%)
Frame = +1
Query: 82 EVAKPAYMDKSATLQELGYKDENELRETIYDYLRTIRDPEKPNTL 216
EV++ A++ S+T + + ++ENE +E I D L T + + NT+
Sbjct: 116 EVSEQAHVTASSTKESVPEENENEEKEGIDDDLETHCESDTTNTI 160
>SB_47853| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1853
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/45 (33%), Positives = 28/45 (62%)
Frame = +1
Query: 82 EVAKPAYMDKSATLQELGYKDENELRETIYDYLRTIRDPEKPNTL 216
EV++ A++ S+T + + ++ENE +E I D L T + + NT+
Sbjct: 526 EVSEQAHVTASSTKESVPEENENEEKEGIDDDLETHCESDTTNTI 570
>SB_12852| Best HMM Match : Mic1 (HMM E-Value=0.32)
Length = 1077
Score = 29.5 bits (63), Expect = 2.5
Identities = 24/95 (25%), Positives = 37/95 (38%)
Frame = +1
Query: 163 TIYDYLRTIRDPEKPNTLEDLKVVYEEGIFVKEPTADKVPVLRVEYNPTVPHCSLATLIG 342
T+ D++RT R PEK LE K + + P + V + ATL G
Sbjct: 387 TVDDFIRTGRIPEKDEILEKAKEYIPDLMITTLPGTSSQTTKAISI--VVTESTRATLYG 444
Query: 343 LCIRIKILRSIHHPVKLDIFIKKGAHTTEXEINKQ 447
+ +L+ PV L F+ A + K+
Sbjct: 445 NGGVVDVLKETTVPVALSEFVAPNASLDTKRLIKE 479
>SB_9628| Best HMM Match : SOCS_box (HMM E-Value=6.3e-11)
Length = 148
Score = 28.7 bits (61), Expect = 4.3
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -1
Query: 292 HVKRALYLQLVPSQRFLPRTRPSSLQAYLAFRGLEL 185
H+ R + QLVP+ R P SL+AYL + L L
Sbjct: 99 HLCRIVINQLVPANRIHELPLPKSLKAYLLYTFLNL 134
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,157,116
Number of Sequences: 59808
Number of extensions: 395999
Number of successful extensions: 1197
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1194
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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