Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_A19
         (652 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              27   0.21 
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        25   0.84 
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        25   0.84 
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        25   0.84 
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            23   3.4  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    22   4.5  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   4.5  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    21   7.8  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   7.8  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     21   7.8  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 26.6 bits (56), Expect = 0.21
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 190  RDPEKPNTLEDLKVVYEEGIFVKEPTADKVP 282
            R P +PN +     VY +    +EPT+ KVP
Sbjct: 1201 RPPSQPNGVITQYTVYTKADNAEEPTSQKVP 1231


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = -2

Query: 618 VNFVNSFLSVIFENATSGAILENC 547
           V FVNSFL VI    +SG I   C
Sbjct: 14  VLFVNSFLFVIAAQDSSGRIFTIC 37


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = -2

Query: 618 VNFVNSFLSVIFENATSGAILENC 547
           V FVNSFL VI    +SG I   C
Sbjct: 14  VLFVNSFLFVIAAQDSSGRIFTIC 37


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = -2

Query: 618 VNFVNSFLSVIFENATSGAILENC 547
           V FVNSFL VI    +SG I   C
Sbjct: 14  VLFVNSFLFVIAAQDSSGRIFTIC 37


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -1

Query: 178 NSHILSLSTHSRLCSRALVM*H 113
           N +ILS S H  +CS   +  H
Sbjct: 361 NGNILSPSIHDNICSNGWICEH 382


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/35 (22%), Positives = 16/35 (45%)
 Frame = +3

Query: 462 EDCSCNGESQSKKPXGKLHSRRGVNQPNNNSLKWH 566
           +DC CN    ++ P   +   R V+    +  +W+
Sbjct: 303 DDCGCNSTMLNENPARVMACMRSVDAKTISVQQWN 337


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/35 (22%), Positives = 16/35 (45%)
 Frame = +3

Query: 462 EDCSCNGESQSKKPXGKLHSRRGVNQPNNNSLKWH 566
           +DC CN    ++ P   +   R V+    +  +W+
Sbjct: 303 DDCGCNSTMLNENPARVMACMRSVDAKTISVQQWN 337


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/38 (26%), Positives = 16/38 (42%)
 Frame = -2

Query: 270 CSWFLHKDSFLVHDLQVFKRIWLFGVSNCPQIVIYCLS 157
           CS+     S L   L+    ++ +  +NC     YC S
Sbjct: 22  CSYSCVNKSMLNSHLKSHSNVYQYRCANCTYATKYCHS 59


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -2

Query: 105 HICGLSDLHW 76
           HI  +SDLHW
Sbjct: 294 HILCMSDLHW 303


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -2

Query: 558 LENCCWVDLLLFGYAVF 508
           L+N  W D LL  Y VF
Sbjct: 37  LDNSVWADGLLVFYEVF 53


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,452
Number of Sequences: 438
Number of extensions: 3453
Number of successful extensions: 13
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)