Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_A19
(652 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g68310.1 68414.m07803 expressed protein contains Pfam profile... 129 2e-30
At3g09380.1 68416.m01113 hypothetical protein contains Pfam prof... 98 5e-21
At4g04990.1 68417.m00728 expressed protein contains Pfam domain ... 32 0.29
At5g46400.1 68418.m05711 expressed protein 28 6.2
At4g24520.1 68417.m03515 NADPH-cytochrome p450 reductase, putati... 28 6.2
At1g18500.1 68414.m02309 2-isopropylmalate synthase, putative st... 28 6.2
At5g45410.1 68418.m05580 expressed protein similar to unknown pr... 27 8.2
At5g36100.1 68418.m04350 hypothetical protein similar to unknown... 27 8.2
At4g04640.1 68417.m00679 ATP synthase gamma chain 1, chloroplast... 27 8.2
At1g64370.1 68414.m07295 expressed protein 27 8.2
At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative si... 27 8.2
>At1g68310.1 68414.m07803 expressed protein contains Pfam profile
PF01883: Domain of unknown function
Length = 159
Score = 129 bits (311), Expect = 2e-30
Identities = 61/120 (50%), Positives = 86/120 (71%), Gaps = 2/120 (1%)
Frame = +1
Query: 166 IYDYLRT--IRDPEKPNTLEDLKVVYEEGIFVKEPTADKVPVLRVEYNPTVPHCSLATLI 339
I+D L + I+DPE PNTLEDL+VV E+ + V D+ +RV + PTV HCS+AT+I
Sbjct: 40 IFDILSSSNIKDPEHPNTLEDLRVVTEDSVEVD----DENSYVRVTFTPTVEHCSMATVI 95
Query: 340 GLCIRIKILRSIHHPVKLDIFIKKGAHTTEXEINKQINDXERIAAAMENPNLRNLXENCI 519
GLC+R+K+LRS+ K+DI + G+H TE +NKQ+ND ER+AAA+ENPNL + + C+
Sbjct: 96 GLCVRVKLLRSLPSRYKIDIRVAPGSHATEDALNKQLNDKERVAAALENPNLVEMVDECL 155
>At3g09380.1 68416.m01113 hypothetical protein contains Pfam profile
PF01883: Domain of unknown function
Length = 156
Score = 97.9 bits (233), Expect = 5e-21
Identities = 47/107 (43%), Positives = 69/107 (64%), Gaps = 1/107 (0%)
Frame = +1
Query: 178 LRTIRDPEKPN-TLEDLKVVYEEGIFVKEPTADKVPVLRVEYNPTVPHCSLATLIGLCIR 354
+R I+DPE P +LEDL V+ EE + V D +R+ + PT+PHC L T IGLCI
Sbjct: 43 IRDIKDPEHPELSLEDLNVLTEESVEVD----DHKSYVRITFTPTLPHCHLPTHIGLCIL 98
Query: 355 IKILRSIHHPVKLDIFIKKGAHTTEXEINKQINDXERIAAAMENPNL 495
+K+++S+ K+D+ + G+H E +NKQ+ D ER+ AA+ENP L
Sbjct: 99 VKLVQSLPARFKVDVRVAPGSHDKETTVNKQLGDKERVTAALENPEL 145
>At4g04990.1 68417.m00728 expressed protein contains Pfam domain
PF05553: Cotton fiber expressed protein
Length = 303
Score = 32.3 bits (70), Expect = 0.29
Identities = 14/50 (28%), Positives = 29/50 (58%)
Frame = +1
Query: 73 QPVEVAKPAYMDKSATLQELGYKDENELRETIYDYLRTIRDPEKPNTLED 222
+PV + +P + Q+ DE+E E +++ ++ + P+KPN+L+D
Sbjct: 141 KPVGLRRPPTVPVKTFPQDNTSGDESETMEEMWERVKAEKQPKKPNSLQD 190
>At5g46400.1 68418.m05711 expressed protein
Length = 1036
Score = 27.9 bits (59), Expect = 6.2
Identities = 25/99 (25%), Positives = 41/99 (41%), Gaps = 2/99 (2%)
Frame = +1
Query: 181 RTIRDPEKPNTLEDLKVVYEEGIFVKEPTADKVPVLRVEYNPTVPHCSLATLIGLCIRIK 360
+T+ E T L V + +V +AD + +E N VPHC L L+ +R+
Sbjct: 431 KTLIGKENLETTARLYVQFSRLKYVITNSADDAAQILLEGNENVPHCKL--LLEELMRLL 488
Query: 361 ILRSIHHPVKL--DIFIKKGAHTTEXEINKQINDXERIA 471
++ V L I K+ +H + D E I+
Sbjct: 489 MMHGGSRQVDLLDPIIDKELSHQADSSDGLSAEDKEEIS 527
>At4g24520.1 68417.m03515 NADPH-cytochrome p450 reductase, putative
/ NADPH-ferrihemoprotein reductase, putative similar to
NADPH-ferrihemoprotein reductase NADPH-cytochrome P450
oxydoreductase isoform 1 [Populus balsamifera subsp.
trichocarpa x Populus deltoides] GI:13183562, SP|P37116
NADPH-cytochrome P450 reductase (EC 1.6.2.4) (CPR)
[Vigna radiata] {Phaseolus aureus}
Length = 692
Score = 27.9 bits (59), Expect = 6.2
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +1
Query: 373 IHHPVKLDIFIKKGAHTTEXE 435
IHHP ++D+ ++K HT E +
Sbjct: 289 IHHPCRVDVAVQKELHTHESD 309
>At1g18500.1 68414.m02309 2-isopropylmalate synthase, putative
strong similarity to 2-isopropylmalate synthase (IMS1)
[Arabidopsis thaliana] GI:12330687; contains Pfam
profile PF00682: HMGL-like
Length = 631
Score = 27.9 bits (59), Expect = 6.2
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +1
Query: 121 LQELGYKDENELRETIYDYLRTIRDPEKPNTLEDLKVVYEEGIFVKE 261
L ELGY+ ++E TI+ +T+ + +K T D+ + + +F E
Sbjct: 439 LTELGYQLDDEQLSTIFWRFKTVAEQKKRVTDADIIALVSDEVFQPE 485
>At5g45410.1 68418.m05580 expressed protein similar to unknown
protein (pir||T05524)
Length = 342
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +2
Query: 275 KCPFYVWSIIQQCPIVR 325
+CPF SIIQ+CP +R
Sbjct: 4 ECPFAAESIIQKCPFLR 20
>At5g36100.1 68418.m04350 hypothetical protein similar to unknown
protein (gb|AAD26867.1)
Length = 236
Score = 27.5 bits (58), Expect = 8.2
Identities = 15/69 (21%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +1
Query: 79 VEVAKPAYMD-KSATLQELGYKDENELRETIYDYLRTIRDPEKPNTLEDLKVVYEEGIFV 255
V +++P + + T + Y+++ ++ + + +L +IRD K N V+ E+G
Sbjct: 107 VAISEPVLVQIEEETTIAIAYREDEDMTKELKSWLESIRDEGKNNQSLYRGVILEKGFEE 166
Query: 256 KEPTADKVP 282
++ VP
Sbjct: 167 EDKDQSIVP 175
>At4g04640.1 68417.m00679 ATP synthase gamma chain 1, chloroplast
(ATPC1) identical to SP|Q01908 ATP synthase gamma chain
1, chloroplast precursor (EC 3.6.3.14) {Arabidopsis
thaliana}
Length = 373
Score = 27.5 bits (58), Expect = 8.2
Identities = 19/69 (27%), Positives = 35/69 (50%)
Frame = +1
Query: 211 TLEDLKVVYEEGIFVKEPTADKVPVLRVEYNPTVPHCSLATLIGLCIRIKILRSIHHPVK 390
T ++ K+ E F + PTAD P+L+ E +P L L+ L + +ILR++ +
Sbjct: 267 TTKEGKLTVERETF-RTPTADFSPILQFEQDPVQ---ILDALLPLYLNSQILRALQESLA 322
Query: 391 LDIFIKKGA 417
++ + A
Sbjct: 323 SELAARMSA 331
>At1g64370.1 68414.m07295 expressed protein
Length = 178
Score = 27.5 bits (58), Expect = 8.2
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 450 QRQXEDCSCNGESQSKKPXGKLHSRRGVNQ 539
Q Q + G+SQS+ G++H+R G NQ
Sbjct: 24 QSQSHNHEGYGQSQSRGGYGQIHNREGYNQ 53
>At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative
similar to SP|O94761 ATP-dependent DNA helicase Q4
(RecQ4) {Homo sapiens}; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 911
Score = 27.5 bits (58), Expect = 8.2
Identities = 19/45 (42%), Positives = 23/45 (51%)
Frame = -1
Query: 262 VPSQRFLPRTRPSSLQAYLAFRGLELSSNSHILSLSTHSRLCSRA 128
VPS + P PS L L FR + S+S+ SRLCSRA
Sbjct: 67 VPSP-YPPPPPPSPLFTNLPFRICQSQPARFSSSVSSFSRLCSRA 110
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,456,755
Number of Sequences: 28952
Number of extensions: 271622
Number of successful extensions: 706
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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