Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_A17
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces ...    28   1.0  
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce...    26   5.4  
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    25   7.2  
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     25   7.2  
SPBC32H8.06 |mug93||TPR repeat protein, meiotically spliced|Schi...    25   7.2  

>SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 655

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 26/114 (22%), Positives = 47/114 (41%)
 Frame = +1

Query: 73  NNLDSNSLKSIKKMEFVVCRICLKINVKMHRITKTKLQIIYEKLTNIKIENHVLPLLLCY 252
           + L  N+   I+K    V R  L+ +  +H        +I   +TN   + +++P LL  
Sbjct: 385 DELKKNTDNIIRKSFLPVLRTLLEKSNHLHCYQDDIFSMIQTSVTNSGKDANIIPCLLRS 444

Query: 253 MCRRKLQNCNELMLKALNSEMFLAELGRSGVQLTEQVIETNSHHESLLSQSKIE 414
             +R   N      K +N+ +        G QL E+++     H  LL  S ++
Sbjct: 445 KHKRDKANPENKERKLVNNLL--------GAQLLEEMLHCEKQHIQLLLDSVLD 490


>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 817

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = +1

Query: 76  NLDSNSLKSIKKMEFVVCRICLKI 147
           NLD     S+KK+ F++ ++C+++
Sbjct: 226 NLDKVIHSSLKKLSFLIFKVCIRL 249


>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1375

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +1

Query: 154  KMHRITKTKLQIIYEKLTNIKIENHVLPLLL 246
            ++HRI +T+   +Y  +    +E H+L L L
Sbjct: 1292 RVHRIGQTRPTFVYYYIVEDTVEGHILNLSL 1322


>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = -2

Query: 180 FSLCNSMHFYIYFQTYSAHDKFHFFDR 100
           F++CN + +Y+Y   +  H   + F R
Sbjct: 642 FTICNLLMYYLYGSPFLEHTYLYHFGR 668


>SPBC32H8.06 |mug93||TPR repeat protein, meiotically
           spliced|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = -3

Query: 155 FTFIFKHILHTTNSIFLIDLSELESRLFVN 66
           F+F+ +H LH T +  L+ + +++   F N
Sbjct: 326 FSFVVQHCLHITAAQILLHIPDIQEEEFRN 355


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,323,461
Number of Sequences: 5004
Number of extensions: 43021
Number of successful extensions: 172
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)