Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_A17
         (652 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0878 - 32669790-32669846,32670206-32670299,32670384-326704...    29   3.2  
02_04_0157 + 20388761-20388763,20389807-20389935,20390206-203903...    28   7.4  
01_01_0908 + 7158172-7158356,7159436-7159866,7159953-7161061,716...    28   7.4  

>01_06_0878 -
           32669790-32669846,32670206-32670299,32670384-32670499,
           32670786-32671096,32672243-32672364,32672754-32672870,
           32672982-32673054,32673416-32673542,32673659-32673727,
           32673811-32674170,32674493-32674633
          Length = 528

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 27/103 (26%), Positives = 44/103 (42%), Gaps = 7/103 (6%)
 Frame = +1

Query: 160 HRITKTKLQIIYEKLTNIKIENHVLPLLLCYMCRRKLQNCNE-LMLKALNSEMF------ 318
           H++    L I        +I N +L  +  Y  RR L  C E L  K +NS+        
Sbjct: 298 HQVDSDDLTIAINFWWKSRIMNEMLEHMDAYYLRRILSRCPEQLKQKQVNSDSSDKKDSP 357

Query: 319 LAELGRSGVQLTEQVIETNSHHESLLSQSKIETVEIQEVYVKK 447
           L  L  S +Q   ++I    +   ++SQ++I     Q+ Y K+
Sbjct: 358 LQTLEPSTLQALYELISLVHNSAEMVSQNEITEPTSQDAYCKQ 400


>02_04_0157 + 20388761-20388763,20389807-20389935,20390206-20390349,
            20390690-20390835,20390915-20391071,20391312-20391370,
            20391466-20391664,20392232-20392381,20392471-20392607,
            20392717-20392863,20392975-20393076,20395655-20395712,
            20395816-20395917,20396236-20396273,20396409-20396535,
            20397092-20397259,20397356-20397487,20400222-20400331,
            20400400-20400460,20400929-20401106,20401194-20401399,
            20401552-20401671,20402523-20402621,20404177-20404386,
            20404704-20404843,20404945-20405053,20405351-20405431,
            20405523-20405693,20405825-20405974,20407029-20407202,
            20407453-20407479,20407688-20407758,20407843-20407942,
            20408305-20408361,20409457-20409513,20409656-20409736,
            20410336-20410421,20410535-20410649
          Length = 1466

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +1

Query: 103  IKKMEFVVCRICLKINVKMHRITKTKLQIIYEKLTNIKIENHVL 234
            +KK    + +       K++ +T T L +  EKLTN+++EN VL
Sbjct: 1014 VKKAREELLKKATDAESKINGLTNTMLSL-QEKLTNMELENQVL 1056


>01_01_0908 +
           7158172-7158356,7159436-7159866,7159953-7161061,
           7161372-7162820
          Length = 1057

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 7/85 (8%)
 Frame = +1

Query: 172 KTKLQIIYEKLTNIK-IENHVLPLLLCYMCRRKLQ---NC---NELMLKALNSEMFLAEL 330
           K KL++  EK T I  I   ++ LL      R+L    +C   N +  K    +  +   
Sbjct: 600 KQKLEVTREKQTMIDDIPMDIVELLAKNQHERQLMTETDCSDINRIQSKTTADDDCVIVA 659

Query: 331 GRSGVQLTEQVIETNSHHESLLSQS 405
            + G      V +TNS  +SL SQS
Sbjct: 660 AKDGSDYASSVFDTNSQQKSLASQS 684


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,260,119
Number of Sequences: 37544
Number of extensions: 224367
Number of successful extensions: 527
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 526
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)