Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_A17
(652 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16100| Best HMM Match : Ank (HMM E-Value=1.4e-14) 32 0.47
SB_31875| Best HMM Match : SNF2_N (HMM E-Value=0) 32 0.47
SB_56223| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_32744| Best HMM Match : Sulfatase (HMM E-Value=0) 29 3.3
SB_31650| Best HMM Match : No HMM Matches (HMM E-Value=.) 23 4.4
SB_16120| Best HMM Match : efhand (HMM E-Value=0.0059) 28 5.7
SB_7912| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_51839| Best HMM Match : Gp-FAR-1 (HMM E-Value=2) 28 7.6
SB_26111| Best HMM Match : Ank (HMM E-Value=7.2e-29) 28 7.6
>SB_16100| Best HMM Match : Ank (HMM E-Value=1.4e-14)
Length = 189
Score = 31.9 bits (69), Expect = 0.47
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 8/81 (9%)
Frame = +1
Query: 88 NSLKSIKKMEFVVCRICLKINVKMHRITKTKLQIIYEKLTNIKIENHVLP--------LL 243
N+++SI+K + + N + + TK+Q +EK TNI +EN P
Sbjct: 42 NNMQSIQKTITLKDVNKRRANHALEDVGHTKIQFGWEKATNILLENRANPNAANKNDATP 101
Query: 244 LCYMCRRKLQNCNELMLKALN 306
L Y CRR + L+L+AL+
Sbjct: 102 LHYACRRGSREVVALLLEALD 122
>SB_31875| Best HMM Match : SNF2_N (HMM E-Value=0)
Length = 1478
Score = 31.9 bits (69), Expect = 0.47
Identities = 30/111 (27%), Positives = 59/111 (53%), Gaps = 7/111 (6%)
Frame = +1
Query: 139 LKINVKMHRITKTKLQIIYEKLTNIKIENHVLPLLLCYMCRRKLQNCNELMLKALNSEMF 318
L+ + HRI +TK ++Y +T+ ++ ++ +RKL+ K +NS+
Sbjct: 1300 LQAQDRCHRIGQTKPILVYRLVTSNTVDQKIVERA---ASKRKLE-------KMVNSKAK 1349
Query: 319 LAELGRSGVQLTEQVIETNSH------HESLLSQSKIET-VEIQEVYVKKE 450
L + +QL E ++E++ H E +LSQS++E+ ++ +YVK+E
Sbjct: 1350 LTGTTLNALQLKE-LLESSHHDEIISKDEVILSQSELESLLDRSSMYVKRE 1399
>SB_56223| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1719
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = +1
Query: 535 GNNATDSE-DDVPLKSIFKKDKEKQVPREMSE 627
G DS DDV LK++FK+ + +Q R+M+E
Sbjct: 1210 GTEKPDSRHDDVILKALFKRGESRQTARDMAE 1241
>SB_32744| Best HMM Match : Sulfatase (HMM E-Value=0)
Length = 485
Score = 29.1 bits (62), Expect = 3.3
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Frame = +1
Query: 250 YMCRRKLQNCNELML-KALNSEMFLA--ELGRSGVQLTEQVIETNSHHESLLSQSKIETV 420
Y C R L + M + +SE F+ +L + QL V ET H E L Q ++ET+
Sbjct: 417 YSCVRTLTTSRDFMFCEFRDSEAFVEFYDLNKDPAQLNNMV-ETADHKELLAQQKRLETL 475
>SB_31650| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3212
Score = 23.4 bits (48), Expect(2) = 4.4
Identities = 17/72 (23%), Positives = 35/72 (48%)
Frame = +1
Query: 73 NNLDSNSLKSIKKMEFVVCRICLKINVKMHRITKTKLQIIYEKLTNIKIENHVLPLLLCY 252
++LD+ S +++E + + + +V M + K K Q + K T + + +PL L
Sbjct: 2316 DSLDA-SYSGQEQLEAEIDSLVSQNDVLMSEVKKMKAQELLLKRTLQQQRRYSIPLRLKE 2374
Query: 253 MCRRKLQNCNEL 288
C++ + N L
Sbjct: 2375 KCKKLEETANAL 2386
Score = 23.4 bits (48), Expect(2) = 4.4
Identities = 10/37 (27%), Positives = 17/37 (45%)
Frame = +1
Query: 355 EQVIETNSHHESLLSQSKIETVEIQEVYVKKEITEXN 465
E+ + L QSK E E+ + Y+K ++ N
Sbjct: 2380 EETANALKRAQESLKQSKEEFRELHDAYIKMQVEHEN 2416
>SB_16120| Best HMM Match : efhand (HMM E-Value=0.0059)
Length = 399
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -1
Query: 565 HHLPSQLHYYHHXC*NRISVNLSNHRHSINLH*Y 464
HHL HY+HH + + ++ HRH+ + H Y
Sbjct: 244 HHLHH--HYHHHKHHHPVDGIITGHRHTYHYHYY 275
>SB_7912| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1020
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +1
Query: 136 CLKINVKMHRITKTKLQIIYEKLTNIKIENHVLPLLLCYMC 258
CL+I V M+R++ K +I +K+ I P+ L Y C
Sbjct: 745 CLQITVDMYRVSADKPAVIEDKVLERIIRALCTPMRLKYDC 785
>SB_51839| Best HMM Match : Gp-FAR-1 (HMM E-Value=2)
Length = 337
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +1
Query: 190 IYEKLTNIKIENHVLPLL-LCYMCRRKLQNCNELMLKALNSEMFLAELGRSGVQLTEQV 363
+YE + + ++ NH P L C RK +C +LK L + LA + + ++Q+
Sbjct: 280 VYESMMSTQVNNHFDPKLDPCLSAYRKKHSCETTLLK-LTEDWKLAVDSKQFIGYSQQI 337
>SB_26111| Best HMM Match : Ank (HMM E-Value=7.2e-29)
Length = 289
Score = 27.9 bits (59), Expect = 7.6
Identities = 20/77 (25%), Positives = 34/77 (44%)
Frame = +1
Query: 208 NIKIENHVLPLLLCYMCRRKLQNCNELMLKALNSEMFLAELGRSGVQLTEQVIETNSHHE 387
N++ PLL+ CR +NC EL+ L +E L R+G + +
Sbjct: 143 NVRNTQGQTPLLVA--CRELHENCIELL---LGTECDLDARDRAGYNILYYACNSTPDGS 197
Query: 388 SLLSQSKIETVEIQEVY 438
+L + K+E V + +Y
Sbjct: 198 IILKRGKLENVRLLLLY 214
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,458,831
Number of Sequences: 59808
Number of extensions: 291883
Number of successful extensions: 810
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 807
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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