Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_A17
         (652 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g14760.1 68417.m02271 M protein repeat-containing protein con...    29   2.7  
At5g05670.2 68418.m00624 expressed protein                             29   3.5  
At5g05670.1 68418.m00623 expressed protein                             29   3.5  
At4g29520.1 68417.m04211 expressed protein                             28   6.2  
At4g26510.2 68417.m03818 uracil phosphoribosyltransferase / UMP ...    28   6.2  
At4g26510.1 68417.m03817 uracil phosphoribosyltransferase / UMP ...    28   6.2  
At3g27900.1 68416.m03481 hypothetical protein                          28   6.2  
At3g27190.1 68416.m03400 uracil phosphoribosyltransferase, putat...    28   6.2  
At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex...    27   8.2  

>At4g14760.1 68417.m02271 M protein repeat-containing protein contains
            Pfam profile: PF02370 M protein repeat
          Length = 1676

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 33/128 (25%), Positives = 63/128 (49%), Gaps = 3/128 (2%)
 Frame = +1

Query: 52   NDLFLFTNNLDSNSLKSIKKMEFVVCRICLKINVKMHRITK--TKLQIIYEKL-TNIKIE 222
            +D F F  N D + L  +K+ E +V ++C K+  K+  + K  T+L++ Y  L  + K++
Sbjct: 671  DDFFQFLKN-DKSEL--MKERESLVSQLC-KVEEKLGVLEKKYTELEVRYTDLQRDNKLK 726

Query: 223  NHVLPLLLCYMCRRKLQNCNELMLKALNSEMFLAELGRSGVQLTEQVIETNSHHESLLSQ 402
            +H +  L   +   K ++ N       ++E  LA+L ++   L E+       +E  L +
Sbjct: 727  SHQVEELQVSLAAEKQESAN----YKRSTESRLADLQKNVSFLREECRSRKREYEDELDR 782

Query: 403  SKIETVEI 426
               + VEI
Sbjct: 783  VVNKQVEI 790


>At5g05670.2 68418.m00624 expressed protein 
          Length = 260

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
 Frame = +1

Query: 184 QIIYEKLTNIKIENHVLPLLLCYMCRRKL-QNCNELMLKALNSEMFLAELGRSGVQLTE 357
           + +YE LTN  +    +P+LLC     KL  +  E + K +  E+      RS V   +
Sbjct: 154 EYLYEILTNANVVKKKIPVLLCCNKTDKLTAHTKEFIRKQMEKEIEKLRASRSAVSTAD 212


>At5g05670.1 68418.m00623 expressed protein 
          Length = 260

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
 Frame = +1

Query: 184 QIIYEKLTNIKIENHVLPLLLCYMCRRKL-QNCNELMLKALNSEMFLAELGRSGVQLTE 357
           + +YE LTN  +    +P+LLC     KL  +  E + K +  E+      RS V   +
Sbjct: 154 EYLYEILTNANVVKKKIPVLLCCNKTDKLTAHTKEFIRKQMEKEIEKLRASRSAVSTAD 212


>At4g29520.1 68417.m04211 expressed protein
          Length = 306

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = +1

Query: 118 FVVCRICLKINVKMHRITKTKLQIIYEK 201
           ++ C++C K++ ++H++ K K Q I  K
Sbjct: 42  YIKCQVCEKLSSRLHQLVKEKQQQISPK 69


>At4g26510.2 68417.m03818 uracil phosphoribosyltransferase / UMP
           pyrophosphorylase (UPT1) nearly identical to SP|O65583
           Uracil phosphoribosyltransferase (EC 2.4.2.9) (UMP
           pyrophosphorylase) (UPRTase) {Arabidopsis thaliana}
          Length = 402

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
 Frame = +1

Query: 94  LKSIKKMEFVVCRIC--LKIN-VKMHRITKTKLQIIYEKLTNIKIENHVLPL 240
           ++S + ME  +   C  +KI  + +HR      Q++YEKL N   E HVL L
Sbjct: 268 IRSGESMENALRACCKGIKIGKILIHREGDNGQQLVYEKLPNDISERHVLLL 319


>At4g26510.1 68417.m03817 uracil phosphoribosyltransferase / UMP
           pyrophosphorylase (UPT1) nearly identical to SP|O65583
           Uracil phosphoribosyltransferase (EC 2.4.2.9) (UMP
           pyrophosphorylase) (UPRTase) {Arabidopsis thaliana}
          Length = 402

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
 Frame = +1

Query: 94  LKSIKKMEFVVCRIC--LKIN-VKMHRITKTKLQIIYEKLTNIKIENHVLPL 240
           ++S + ME  +   C  +KI  + +HR      Q++YEKL N   E HVL L
Sbjct: 268 IRSGESMENALRACCKGIKIGKILIHREGDNGQQLVYEKLPNDISERHVLLL 319


>At3g27900.1 68416.m03481 hypothetical protein
          Length = 244

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 10/41 (24%), Positives = 21/41 (51%)
 Frame = -3

Query: 161 CIFTFIFKHILHTTNSIFLIDLSELESRLFVNKNKSFTYVI 39
           C+  ++ +  +   N ++L D+   +  +FV   KSF + I
Sbjct: 96  CVMLYVLETYIKPKNGVYLADVKSNQWEVFVKSCKSFVFGI 136


>At3g27190.1 68416.m03400 uracil phosphoribosyltransferase, putative
           / UMP pyrophosphorylase, putative / UPRTase, putative
           similar to SP|O65583 Uracil phosphoribosyltransferase
           (EC 2.4.2.9) (UMP pyrophosphorylase) (UPRTase)
           {Arabidopsis thaliana}; contains Pfam profile PF00485:
           Phosphoribulokinase / Uridine kinase family
          Length = 483

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
 Frame = +1

Query: 94  LKSIKKMEFVVCRIC--LKIN-VKMHRITKTKLQIIYEKLTNIKIENHVLPL 240
           ++S + ME  +   C  +KI  + +HR     +Q+IYEKL +   E HVL L
Sbjct: 350 IRSGESMENALRACCKGIKIGKILIHRDGDNGMQLIYEKLPSDISERHVLLL 401


>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 839

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 16/40 (40%), Positives = 24/40 (60%)
 Frame = -3

Query: 182 NLVFVILCIFTFIFKHILHTTNSIFLIDLSELESRLFVNK 63
           +L+FV+L I TF F  I ++ +  F  DLS+ E RL   +
Sbjct: 11  SLIFVLLFI-TFFFTSISYSLSLTFNGDLSDNEVRLITQR 49


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,557,755
Number of Sequences: 28952
Number of extensions: 205257
Number of successful extensions: 538
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 538
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)