Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_A15
(489 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P41094 Cluster: 40S ribosomal protein S18; n=137; Eukar... 274 9e-73
UniRef50_P62269 Cluster: 40S ribosomal protein S18; n=58; Eukary... 255 4e-67
UniRef50_UPI00006CC3CE Cluster: ribosomal protein S13p/S18e cont... 170 2e-41
UniRef50_UPI00001C91B1 Cluster: PREDICTED: similar to ribosomal ... 169 3e-41
UniRef50_Q7QRY7 Cluster: GLP_549_8004_7540; n=1; Giardia lamblia... 146 2e-34
UniRef50_A2E0E1 Cluster: Ribosomal protein S13p/S18e, putative; ... 135 4e-31
UniRef50_Q8TRR2 Cluster: 30S ribosomal protein S13P; n=4; Euryar... 126 2e-28
UniRef50_Q8SRP2 Cluster: 40S ribosomal protein S18; n=1; Encepha... 125 6e-28
UniRef50_P54019 Cluster: 30S ribosomal protein S13P; n=9; Euryar... 123 2e-27
UniRef50_Q0W1V6 Cluster: 30S ribosomal protein S13P; n=11; Archa... 122 3e-27
UniRef50_Q96YV7 Cluster: 30S ribosomal protein S13P; n=10; Archa... 119 3e-26
UniRef50_Q9HJD6 Cluster: 30S ribosomal protein S13P; n=4; Thermo... 119 4e-26
UniRef50_A0EBZ1 Cluster: Chromosome undetermined scaffold_89, wh... 110 2e-23
UniRef50_Q6LXN1 Cluster: 30S ribosomal protein S13P; n=4; Methan... 107 2e-22
UniRef50_A0RY01 Cluster: 30S ribosomal protein S13P; n=2; Thermo... 106 2e-22
UniRef50_Q00861 Cluster: 30S ribosomal protein S13P; n=5; Haloba... 102 5e-21
UniRef50_Q3LW54 Cluster: Ribosomal protein S18; n=1; Bigelowiell... 101 9e-21
UniRef50_Q8H583 Cluster: Ribosomal protein S18-like; n=1; Oryza ... 100 3e-20
UniRef50_A0SNY5 Cluster: SSU ribosomal protein S13AB; n=1; uncul... 94 2e-18
UniRef50_A4WM28 Cluster: 30S ribosomal protein S13P; n=2; Thermo... 94 2e-18
UniRef50_Q4V607 Cluster: IP07925p; n=3; Sophophora|Rep: IP07925p... 93 4e-18
UniRef50_Q74M95 Cluster: 30S ribosomal protein S13P; n=1; Nanoar... 85 1e-15
UniRef50_Q00VP7 Cluster: Chromosome 14 contig 1, DNA sequence; n... 75 6e-13
UniRef50_Q9X1I5 Cluster: 30S ribosomal protein S13; n=14; Bacter... 62 6e-09
UniRef50_UPI0001555DA0 Cluster: PREDICTED: similar to olfactory ... 55 7e-07
UniRef50_A6PT06 Cluster: Ribosomal protein S13; n=1; Victivallis... 54 2e-06
UniRef50_Q7QRY8 Cluster: GLP_549_7513_8304; n=1; Giardia lamblia... 49 5e-05
UniRef50_Q2JL76 Cluster: 30S ribosomal protein S13; n=212; cellu... 49 5e-05
UniRef50_Q601J1 Cluster: 30S ribosomal protein S13; n=3; Mycopla... 49 6e-05
UniRef50_O66486 Cluster: 30S ribosomal protein S13; n=28; cellul... 49 6e-05
UniRef50_A7PUB9 Cluster: Chromosome chr7 scaffold_31, whole geno... 48 8e-05
UniRef50_Q6G2Y7 Cluster: 30S ribosomal protein S13; n=20; cellul... 47 3e-04
UniRef50_Q5NQ42 Cluster: 30S ribosomal protein S13; n=107; cellu... 46 6e-04
UniRef50_Q8FS35 Cluster: 30S ribosomal protein S13; n=42; Bacter... 43 0.003
UniRef50_Q6A6Q8 Cluster: 30S ribosomal protein S13; n=32; cellul... 41 0.013
UniRef50_Q6CFI9 Cluster: Yarrowia lipolytica chromosome B of str... 41 0.017
UniRef50_Q2TUB5 Cluster: Ribosomal protein S13; n=1; Dictyota di... 40 0.022
UniRef50_Q0QIP8 Cluster: Ribosomal protein S13; n=1; Oltmannsiel... 40 0.022
UniRef50_A6RYD3 Cluster: Putative uncharacterized protein; n=1; ... 40 0.022
UniRef50_Q8W9S0 Cluster: Ribosomal protein S13; n=1; Mesostigma ... 40 0.039
UniRef50_Q4WP11 Cluster: 40S ribosomal protein S13; n=5; Eurotio... 40 0.039
UniRef50_O59772 Cluster: Mitochondrial ribosomal protein subunit... 40 0.039
UniRef50_A1CXK9 Cluster: 40S ribosomal protein S13; n=7; Pezizom... 40 0.039
UniRef50_Q9TCB7 Cluster: Ribosomal protein S13; n=1; Nephroselmi... 39 0.052
UniRef50_O21258 Cluster: Ribosomal protein S13; n=1; Reclinomona... 39 0.069
UniRef50_Q3S2A2 Cluster: Ribosomal protein S13; n=1; Thalassiosi... 38 0.12
UniRef50_Q5B4R2 Cluster: Putative uncharacterized protein; n=1; ... 38 0.12
UniRef50_Q5A357 Cluster: Potential mitochondrial ribosomal prote... 38 0.12
UniRef50_P42732 Cluster: 30S ribosomal protein S13, chloroplast ... 37 0.21
UniRef50_P46747 Cluster: Mitochondrial ribosomal protein S13; n=... 37 0.28
UniRef50_P08977 Cluster: Mitochondrial ribosomal protein S13; n=... 36 0.37
UniRef50_P15758 Cluster: Mitochondrial ribosomal protein S13; n=... 36 0.48
UniRef50_Q7PY55 Cluster: ENSANGP00000013280; n=4; Endopterygota|... 36 0.64
UniRef50_Q9CA19 Cluster: Small ribosomal subunit protein S13, mi... 36 0.64
UniRef50_Q2GEB8 Cluster: 30S ribosomal protein S13; n=2; Rickett... 36 0.64
UniRef50_Q8M1G5 Cluster: Ribosomal protein S13; n=1; Chaetosphae... 35 0.84
UniRef50_Q5CLQ5 Cluster: COG1752: esterase of the alpha-beta hyd... 35 1.1
UniRef50_P46760 Cluster: Mitochondrial ribosomal protein S13; n=... 35 1.1
UniRef50_Q9G886 Cluster: Ribosomal protein S13; n=1; Malawimonas... 34 1.5
UniRef50_Q8M0B4 Cluster: Ribosomal protein S13; n=1; Amoebidium ... 34 2.0
UniRef50_Q8LPW2 Cluster: Small ribosomal subunit protein S13, mi... 34 2.0
UniRef50_A5FGA8 Cluster: DNA-(Apurinic or apyrimidinic site) lya... 33 2.6
UniRef50_A6YEC0 Cluster: Ribosomal protein S13; n=1; Chlorokybus... 33 2.6
UniRef50_A5BVY1 Cluster: Putative uncharacterized protein; n=1; ... 33 2.6
UniRef50_A7BWB3 Cluster: Putative uncharacterized protein; n=1; ... 33 3.4
UniRef50_A3V4I8 Cluster: 30S ribosomal protein S13; n=1; Loktane... 33 3.4
UniRef50_Q8LWZ6 Cluster: Ribosomal protein S13; n=4; Phaeophycea... 33 3.4
UniRef50_Q6UVP6 Cluster: Ribosomal protein S13; n=1; Pseudendocl... 33 3.4
UniRef50_A0NKF0 Cluster: Rhamnosyltransferase; n=1; Oenococcus o... 33 4.5
UniRef50_P53937 Cluster: Mitochondrial 37S ribosomal protein SWS... 33 4.5
UniRef50_Q98JF7 Cluster: Mll1963 protein; n=1; Mesorhizobium lot... 32 6.0
UniRef50_Q7UWV7 Cluster: Putative uncharacterized protein; n=1; ... 32 6.0
UniRef50_A3IUX9 Cluster: Putative uncharacterized protein; n=1; ... 32 6.0
UniRef50_A0DZU7 Cluster: Chromosome undetermined scaffold_70, wh... 32 6.0
UniRef50_UPI0000F1D9F1 Cluster: PREDICTED: hypothetical protein;... 32 7.9
UniRef50_A6LXE0 Cluster: Putative uncharacterized protein precur... 32 7.9
UniRef50_Q9G8P6 Cluster: Ribosomal protein S13; n=1; Naegleria g... 32 7.9
UniRef50_Q7RQE1 Cluster: Protein factor associated with neutral-... 32 7.9
UniRef50_Q47VK1 Cluster: LPS-assembly protein precursor; n=1; Co... 32 7.9
>UniRef50_P41094 Cluster: 40S ribosomal protein S18; n=137;
Eukaryota|Rep: 40S ribosomal protein S18 - Drosophila
melanogaster (Fruit fly)
Length = 152
Score = 274 bits (671), Expect = 9e-73
Identities = 125/143 (87%), Positives = 136/143 (95%)
Frame = +3
Query: 60 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 239
MSLVIP+KFQHILRIMNTNIDGKRKV AMTAIKGVGRRYSNIVLKKAD+DL KRAGECT
Sbjct: 1 MSLVIPEKFQHILRIMNTNIDGKRKVGIAMTAIKGVGRRYSNIVLKKADVDLTKRAGECT 60
Query: 240 EEEVEKIITIMSNPXQYKIPXWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAH 419
EEEV+K++TI+SNP QYK+P WFLNRQKDI+DGKY QLTSSNLDSKLR+DLERLKKIR+H
Sbjct: 61 EEEVDKVVTIISNPLQYKVPNWFLNRQKDIIDGKYWQLTSSNLDSKLRDDLERLKKIRSH 120
Query: 420 RGMRHYWGLRVRGQHTKTTGRXG 488
RG+RHYWGLRVRGQHTKTTGR G
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRG 143
>UniRef50_P62269 Cluster: 40S ribosomal protein S18; n=58;
Eukaryota|Rep: 40S ribosomal protein S18 - Homo sapiens
(Human)
Length = 152
Score = 255 bits (624), Expect = 4e-67
Identities = 113/143 (79%), Positives = 133/143 (93%)
Frame = +3
Query: 60 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 239
MSLVIP+KFQHILR++NTNIDG+RK+ FA+TAIKGVGRRY+++VL+KADIDL KRAGE T
Sbjct: 1 MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELT 60
Query: 240 EEEVEKIITIMSNPXQYKIPXWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAH 419
E+EVE++ITIM NP QYKIP WFLNRQKD+ DGKYSQ+ ++ LD+KLREDLERLKKIRAH
Sbjct: 61 EDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAH 120
Query: 420 RGMRHYWGLRVRGQHTKTTGRXG 488
RG+RH+WGLRVRGQHTKTTGR G
Sbjct: 121 RGLRHFWGLRVRGQHTKTTGRRG 143
>UniRef50_UPI00006CC3CE Cluster: ribosomal protein S13p/S18e
containing protein; n=1; Tetrahymena thermophila
SB210|Rep: ribosomal protein S13p/S18e containing
protein - Tetrahymena thermophila SB210
Length = 155
Score = 170 bits (413), Expect = 2e-41
Identities = 79/145 (54%), Positives = 107/145 (73%), Gaps = 2/145 (1%)
Frame = +3
Query: 60 MSLVIPDK--FQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGE 233
MS VI + F++I RI+NTNIDGKR A+T I+G+GRR++ I+ K ID + RAG
Sbjct: 1 MSFVIEKESDFKYIHRILNTNIDGKRITPIALTGIRGIGRRFAYIICKVLKIDPNARAGL 60
Query: 234 CTEEEVEKIITIMSNPXQYKIPXWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIR 413
TE++ KI ++++P + IP W LNR D DGK Q+ S+ LD+K+REDLERLKKI+
Sbjct: 61 LTEDQCNKITDLIADPEAHGIPTWLLNRINDFKDGKNYQMASNTLDTKMREDLERLKKIK 120
Query: 414 AHRGMRHYWGLRVRGQHTKTTGRXG 488
+HRG+RH+WGL+VRGQHTKT+GR G
Sbjct: 121 SHRGLRHFWGLKVRGQHTKTSGRHG 145
>UniRef50_UPI00001C91B1 Cluster: PREDICTED: similar to ribosomal
protein S18; n=2; Rattus norvegicus|Rep: PREDICTED:
similar to ribosomal protein S18 - Rattus norvegicus
Length = 170
Score = 169 bits (411), Expect = 3e-41
Identities = 82/143 (57%), Positives = 110/143 (76%)
Frame = +3
Query: 60 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 239
MSLVI +K QHIL+++NTNID +++ FA+TA KG +RY+++VL+KA IDL K AGE T
Sbjct: 1 MSLVISEKSQHILQVLNTNIDEQQETAFAITATKGAEQRYAHVVLRKAGIDLTKMAGELT 60
Query: 240 EEEVEKIITIMSNPXQYKIPXWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAH 419
E++VE++ITIM NP QY+IP QK + DG+ SQ+ ++ LD+KLRE+LERLKKIRAH
Sbjct: 61 EDKVERVITIMQNPRQYEIP------QKGVRDGRCSQVPANGLDNKLREELERLKKIRAH 114
Query: 420 RGMRHYWGLRVRGQHTKTTGRXG 488
RG+RH+WGL V Q T + G G
Sbjct: 115 RGLRHFWGLHVHCQLTMSHGCRG 137
>UniRef50_Q7QRY7 Cluster: GLP_549_8004_7540; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_549_8004_7540 - Giardia lamblia ATCC
50803
Length = 154
Score = 146 bits (355), Expect = 2e-34
Identities = 66/142 (46%), Positives = 96/142 (67%)
Frame = +3
Query: 63 SLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTE 242
++V P+ ++ +LR+ NTNI GK + A+ IKG+GRR++N+ LKKA+ID+ KRAGE T
Sbjct: 3 TIVQPNDYRDLLRMFNTNIQGKVVLECALVGIKGIGRRFANVALKKANIDVHKRAGELTA 62
Query: 243 EEVEKIITIMSNPXQYKIPXWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHR 422
E + ++ ++ +P + IP W LNR D GK + + + S R DLERL+K R R
Sbjct: 63 AEEDALMKVLEDPLSHGIPAWMLNRNNDFESGKDMHILVNTIASTHRADLERLRKTRCER 122
Query: 423 GMRHYWGLRVRGQHTKTTGRXG 488
G+RH+ L+VRGQHTK+TGR G
Sbjct: 123 GVRHHHNLKVRGQHTKSTGRRG 144
>UniRef50_A2E0E1 Cluster: Ribosomal protein S13p/S18e, putative;
n=3; Trichomonas vaginalis G3|Rep: Ribosomal protein
S13p/S18e, putative - Trichomonas vaginalis G3
Length = 155
Score = 135 bits (327), Expect = 4e-31
Identities = 59/138 (42%), Positives = 99/138 (71%)
Frame = +3
Query: 75 PDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVE 254
P F+ ++R+++TN+DG+R + A+T I G+GRR++ V+++A +D +RAG T +E E
Sbjct: 8 PAAFRDMVRMLSTNVDGRRPLYLALTNISGIGRRFAYAVVRRAGLDPLRRAGTLTPKEEE 67
Query: 255 KIITIMSNPXQYKIPXWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRH 434
I++I+ NP +++IP W LNR+ D G+ + +++L + +R ++ER+KK+R RG+RH
Sbjct: 68 LIVSIIQNPTEHQIPVWMLNRRFDRATGQNTHWVATDLSANIRAEIERMKKMRMKRGIRH 127
Query: 435 YWGLRVRGQHTKTTGRXG 488
GL+VRGQ TK+TGR G
Sbjct: 128 GLGLKVRGQCTKSTGRRG 145
>UniRef50_Q8TRR2 Cluster: 30S ribosomal protein S13P; n=4;
Euryarchaeota|Rep: 30S ribosomal protein S13P -
Methanosarcina acetivorans
Length = 162
Score = 126 bits (305), Expect = 2e-28
Identities = 59/137 (43%), Positives = 89/137 (64%)
Frame = +3
Query: 78 DKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEK 257
++ +H++RIMNT++ G + V +A+T + GVGRR + ++ K A +D G EEEV K
Sbjct: 18 EELRHLVRIMNTDLQGAKPVQYALTGLPGVGRRTAKLIAKGAGVDPSAILGYLPEEEVAK 77
Query: 258 IITIMSNPXQYKIPXWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHY 437
+ T + + +P W LNRQKD+ G+ L +++ RED+ LKK+RA+RG+RH
Sbjct: 78 LDTAIGK-FEDIVPSWMLNRQKDLATGQDKHLLGTDILLTFREDINNLKKVRAYRGLRHE 136
Query: 438 WGLRVRGQHTKTTGRXG 488
GL+VRGQ TK+TGR G
Sbjct: 137 RGLKVRGQRTKSTGRRG 153
>UniRef50_Q8SRP2 Cluster: 40S ribosomal protein S18; n=1;
Encephalitozoon cuniculi|Rep: 40S ribosomal protein S18
- Encephalitozoon cuniculi
Length = 153
Score = 125 bits (301), Expect = 6e-28
Identities = 62/138 (44%), Positives = 90/138 (65%)
Frame = +3
Query: 75 PDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVE 254
P + Q+I+RI NTNIDG +++ FA+T I+G+G R + + K+ IDL KRAGE E+E++
Sbjct: 7 PAEVQYIVRIHNTNIDGTKRIPFALTKIRGIGIRIATAICKRLGIDLRKRAGEMGEDEMK 66
Query: 255 KIITIMSNPXQYKIPXWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRH 434
+I + +P IP ++N Q+DI+DG S L + LD+ LR +ER KK + R R
Sbjct: 67 RISDAILDPASVGIPESYMNHQRDIIDGTTSHLIGTRLDADLRMMIERGKKNKRIRAYRL 126
Query: 435 YWGLRVRGQHTKTTGRXG 488
GL+VRGQ TK+ GR G
Sbjct: 127 DVGLKVRGQRTKSNGRRG 144
>UniRef50_P54019 Cluster: 30S ribosomal protein S13P; n=9;
Euryarchaeota|Rep: 30S ribosomal protein S13P -
Methanococcus jannaschii
Length = 150
Score = 123 bits (296), Expect = 2e-27
Identities = 56/136 (41%), Positives = 91/136 (66%)
Frame = +3
Query: 81 KFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKI 260
+F++++R+ T++DG +K++ A+ I GVG + +++ A +D +K AG TEEEV+KI
Sbjct: 5 EFKYLIRVSRTDLDGNKKLIMALQDIYGVGEAMARAIVRVAKLDPNKLAGYLTEEEVKKI 64
Query: 261 ITIMSNPXQYKIPXWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYW 440
++++P ++ IP W NR+KD V G+ + S+L +ED+ RLK+IR +RG+RH
Sbjct: 65 EEVLADPAKFGIPSWMFNRRKDYVTGEDKHVIESDLMIIKQEDINRLKRIRCYRGIRHEL 124
Query: 441 GLRVRGQHTKTTGRXG 488
GL RGQ TK+T R G
Sbjct: 125 GLPCRGQRTKSTFRRG 140
>UniRef50_Q0W1V6 Cluster: 30S ribosomal protein S13P; n=11;
Archaea|Rep: 30S ribosomal protein S13P - Uncultured
methanogenic archaeon RC-I
Length = 224
Score = 122 bits (295), Expect = 3e-27
Identities = 56/137 (40%), Positives = 90/137 (65%)
Frame = +3
Query: 78 DKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEK 257
D+ ++I+RI NT++DG + V FA+T IKG+G R S I+ ++A +D G E+V+K
Sbjct: 67 DEIKYIVRIANTDLDGTQTVEFALTGIKGIGNRISKIIARQAQVDPHATMGYLPPEQVDK 126
Query: 258 IITIMSNPXQYKIPXWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHY 437
+ ++ N + +P W LNR++DI G+ L +L ++ED+ +KKIR+++G+RH
Sbjct: 127 LRAVIDN-LEANVPVWMLNRRRDIYTGEDKHLYGVDLTMAVKEDINIMKKIRSYKGIRHE 185
Query: 438 WGLRVRGQHTKTTGRXG 488
G +VRGQ TK+TGR G
Sbjct: 186 RGQKVRGQRTKSTGRTG 202
>UniRef50_Q96YV7 Cluster: 30S ribosomal protein S13P; n=10;
Archaea|Rep: 30S ribosomal protein S13P - Sulfolobus
tokodaii
Length = 172
Score = 119 bits (287), Expect = 3e-26
Identities = 53/136 (38%), Positives = 89/136 (65%)
Frame = +3
Query: 81 KFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKI 260
+F++I+R+ ++DG KV +A+ +KG+G + ++ K +D D+R GE ++E+++KI
Sbjct: 6 QFKYIVRLFGQDVDGTMKVPYALAMVKGIGYNTARAIVFKLGLDKDRRLGELSDEDIKKI 65
Query: 261 ITIMSNPXQYKIPXWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYW 440
+++ ++P W NR+KD G L +S+L +R D+ER KKI++ RG+RH
Sbjct: 66 ENYLTDKKILEVPNWMYNRRKDYESGIDMHLVTSDLIFYVRNDIEREKKIKSWRGVRHSL 125
Query: 441 GLRVRGQHTKTTGRXG 488
GL+VRGQ T+TTGR G
Sbjct: 126 GLKVRGQRTRTTGRTG 141
>UniRef50_Q9HJD6 Cluster: 30S ribosomal protein S13P; n=4;
Thermoplasmatales|Rep: 30S ribosomal protein S13P -
Thermoplasma acidophilum
Length = 171
Score = 119 bits (286), Expect = 4e-26
Identities = 51/135 (37%), Positives = 93/135 (68%)
Frame = +3
Query: 84 FQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKII 263
FQ+I+RI N +++G+R + A++ +KG+G R ++ ++ D+ +DK+ GE EE++EK+
Sbjct: 28 FQYIVRIANKDLNGERLLPLALSDLKGIGERLGYVIAERLDLPIDKKIGELKEEQLEKLR 87
Query: 264 TIMSNPXQYKIPXWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWG 443
+ +Y +P W LN +++ V GK L S++L+ +++ED+ +KKIR+++G+RH G
Sbjct: 88 EYVE-AKEYDLPEWLLNHRREPVTGKNLNLVSTDLEIQVQEDINLMKKIRSYKGIRHEKG 146
Query: 444 LRVRGQHTKTTGRXG 488
+VRGQ T++ GR G
Sbjct: 147 KKVRGQRTRSNGRKG 161
>UniRef50_A0EBZ1 Cluster: Chromosome undetermined scaffold_89, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_89,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 193
Score = 110 bits (264), Expect = 2e-23
Identities = 58/141 (41%), Positives = 93/141 (65%), Gaps = 4/141 (2%)
Frame = +3
Query: 60 MSLVIP--DKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGE 233
MSLV+ D+F+ I+RI+NTN+DGK+++ + + +IKG+GRR++ + K ++L KRAGE
Sbjct: 1 MSLVLEKADQFRQIIRILNTNVDGKQQMAYEIRSIKGIGRRFAIQICKVLRLNLTKRAGE 60
Query: 234 CTEEEVEKIITIMSNPXQYKIPXWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIR 413
T+EE KI ++ QY +D+ +GK ++T++ L++KLREDLER+KKI+
Sbjct: 61 LTDEEAHKITEVIKMVPQY---------IRDLKNGKNYEVTTNELETKLREDLERIKKIK 111
Query: 414 AHRG--MRHYWGLRVRGQHTK 470
+ +RH+WGLR K
Sbjct: 112 YSQWLCLRHHWGLRAEDNKQK 132
>UniRef50_Q6LXN1 Cluster: 30S ribosomal protein S13P; n=4;
Methanococcus|Rep: 30S ribosomal protein S13P -
Methanococcus maripaludis
Length = 149
Score = 107 bits (256), Expect = 2e-22
Identities = 47/136 (34%), Positives = 85/136 (62%)
Frame = +3
Query: 81 KFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKI 260
+F+H +RI T+++GK + +A+ +KG+GR + V++ ++D ++AG +E+V KI
Sbjct: 5 EFKHRIRISKTDLEGKNPLEYALQDMKGIGRAMARAVIRVTELDPKQQAGYLADEDVLKI 64
Query: 261 ITIMSNPXQYKIPXWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYW 440
+++ +P + IP W NR+KD+ G L ++L ++ED+ +KKIR ++G+RH
Sbjct: 65 ESVLEDPATHGIPSWMFNRKKDVYSGLDKHLIETDLVLTVQEDITNMKKIRCYKGIRHEL 124
Query: 441 GLRVRGQHTKTTGRXG 488
L RGQ T+ + R G
Sbjct: 125 RLPCRGQRTRGSFRKG 140
>UniRef50_A0RY01 Cluster: 30S ribosomal protein S13P; n=2;
Thermoprotei|Rep: 30S ribosomal protein S13P -
Cenarchaeum symbiosum
Length = 227
Score = 106 bits (255), Expect = 2e-22
Identities = 46/136 (33%), Positives = 84/136 (61%)
Frame = +3
Query: 81 KFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKI 260
+++HI+RI+ ++ G++K + + I+G+G ++ +L ID + G T+E+V I
Sbjct: 50 EYKHIVRILGNDLPGEKKAVVGLRQIRGIGYGFATAILDVLKIDNNSNIGYLTDEQVASI 109
Query: 261 ITIMSNPXQYKIPXWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYW 440
++ +P P WFLNR+KD+ G+ + +S+++ +R D+ER + + +G RH +
Sbjct: 110 EKLLQDPAGAGFPTWFLNRRKDLETGEDRHIFTSDIEFTVRNDVERERVSGSWKGYRHMF 169
Query: 441 GLRVRGQHTKTTGRXG 488
GL+VRGQ T+ TGR G
Sbjct: 170 GLKVRGQRTRNTGRKG 185
>UniRef50_Q00861 Cluster: 30S ribosomal protein S13P; n=5;
Halobacteriaceae|Rep: 30S ribosomal protein S13P -
Haloarcula marismortui (Halobacterium marismortui)
Length = 177
Score = 102 bits (244), Expect = 5e-21
Identities = 47/135 (34%), Positives = 82/135 (60%)
Frame = +3
Query: 78 DKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEK 257
+ ++ +RI T++DG + V A+T + G+G R + I+ +KAD+D G+ ++ +E+
Sbjct: 18 EDIRYFVRIGQTDLDGTKSVERALTELNGIGHRAARIIAQKADVDRRAVFGKLDDDVIER 77
Query: 258 IITIMSNPXQYKIPXWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHY 437
++ + N +P W N QKD G+ + T ++L R+D+ R+K I ++RG+RH
Sbjct: 78 VVERVENFAD-DVPEWMTNHQKDYFTGETTHETGNDLQLTRRQDINRMKMIDSYRGVRHK 136
Query: 438 WGLRVRGQHTKTTGR 482
G +VRGQ TK+TGR
Sbjct: 137 RGQKVRGQRTKSTGR 151
>UniRef50_Q3LW54 Cluster: Ribosomal protein S18; n=1; Bigelowiella
natans|Rep: Ribosomal protein S18 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 159
Score = 101 bits (242), Expect = 9e-21
Identities = 48/137 (35%), Positives = 79/137 (57%)
Frame = +3
Query: 78 DKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEK 257
+K +RI + NI+G F + IKGVG R SN++ K D++ + + ++E+
Sbjct: 13 EKSMTFIRIFDCNINGSLSCNFGLRNIKGVGIRMSNVLRKILKKDINYKLYNIEKADLEE 72
Query: 258 IITIMSNPXQYKIPXWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHY 437
++ I + P W +NR+ D + G + S+ LDS L+ED++RL I+ ++G+RH
Sbjct: 73 VVNIFGKSSRKAFPSWLMNRRADFLTGDNLHVLSTVLDSALQEDIKRLVTIKNNKGLRHL 132
Query: 438 WGLRVRGQHTKTTGRXG 488
L+ RGQHTK+ GR G
Sbjct: 133 SRLKTRGQHTKSNGRRG 149
>UniRef50_Q8H583 Cluster: Ribosomal protein S18-like; n=1; Oryza
sativa (japonica cultivar-group)|Rep: Ribosomal protein
S18-like - Oryza sativa subsp. japonica (Rice)
Length = 145
Score = 99.5 bits (237), Expect = 3e-20
Identities = 43/58 (74%), Positives = 51/58 (87%)
Frame = +3
Query: 315 RQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQHTKTTGRXG 488
++KD DG++SQ+ S+ LD KLR+DLERLKKIR HRG+RHYWGLRVRGQHTKTTGR G
Sbjct: 79 QKKDYKDGRFSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRG 136
>UniRef50_A0SNY5 Cluster: SSU ribosomal protein S13AB; n=1;
uncultured euryarchaeote ARMAN-2|Rep: SSU ribosomal
protein S13AB - uncultured euryarchaeote ARMAN-2
Length = 177
Score = 93.9 bits (223), Expect = 2e-18
Identities = 47/140 (33%), Positives = 80/140 (57%), Gaps = 4/140 (2%)
Frame = +3
Query: 81 KFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSN----IVLKKADIDLDKRAGECTEEE 248
K I+RI N +I+G + A+ +KG+G+ S+ ++ K +ID G E +
Sbjct: 15 KAMSIVRIANKDINGGLNIQRALDQVKGIGQTMSHSLSYVIEHKFNIDPSTPIGSLNESQ 74
Query: 249 VEKIITIMSNPXQYKIPXWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGM 428
V ++ ++ +P +Y +P + LNR+ D+ GK L ++L +R+ + R +R RG
Sbjct: 75 VTQVEELIKDPHKYGVPKYLLNRRNDMDTGKDMHLIGNDLIFAVRQSINRDVTLRVWRGY 134
Query: 429 RHYWGLRVRGQHTKTTGRXG 488
RH +G +VRGQHT++TGR G
Sbjct: 135 RHQYGQKVRGQHTRSTGRTG 154
>UniRef50_A4WM28 Cluster: 30S ribosomal protein S13P; n=2;
Thermoproteaceae|Rep: 30S ribosomal protein S13P -
Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321)
Length = 152
Score = 93.9 bits (223), Expect = 2e-18
Identities = 47/132 (35%), Positives = 78/132 (59%)
Frame = +3
Query: 93 ILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKIITIM 272
I+R+ +T+++G ++V +A+ I+G+G + + K ID G EE++ K+ +
Sbjct: 8 IVRVGDTDLEGNKQVAYALAKIRGIGIASAYAICWKLGIDPHAVLGALPEEQINKLDWAV 67
Query: 273 SNPXQYKIPXWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRV 452
N + P WFLNR+KD G+ L S L + D++ +KK+++ +G+RH GL+V
Sbjct: 68 RNLHEVA-PAWFLNRRKDPETGRDMHLIGSELVLAAKRDVDLMKKLKSWKGIRHSLGLKV 126
Query: 453 RGQHTKTTGRXG 488
RGQ T TTGR G
Sbjct: 127 RGQRTVTTGRLG 138
>UniRef50_Q4V607 Cluster: IP07925p; n=3; Sophophora|Rep: IP07925p -
Drosophila melanogaster (Fruit fly)
Length = 246
Score = 92.7 bits (220), Expect = 4e-18
Identities = 40/48 (83%), Positives = 46/48 (95%)
Frame = +3
Query: 156 IKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKIITIMSNPXQYKIP 299
IKGVGRRYSNIVLKKAD+DL KRAGECTEEEV+K++TI+SNP QYK+P
Sbjct: 1 IKGVGRRYSNIVLKKADVDLTKRAGECTEEEVDKVVTIISNPLQYKVP 48
>UniRef50_Q74M95 Cluster: 30S ribosomal protein S13P; n=1;
Nanoarchaeum equitans|Rep: 30S ribosomal protein S13P -
Nanoarchaeum equitans
Length = 153
Score = 84.6 bits (200), Expect = 1e-15
Identities = 42/132 (31%), Positives = 72/132 (54%)
Frame = +3
Query: 93 ILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKIITIM 272
I+ I + ++DG + + + + GV +++ V ID ++ G ++EE+EK+ +
Sbjct: 13 IVHIADVDLDGHKPIYVELRKVVGVNWMFAHAVCAALGIDKWRKIGSLSDEELEKLEDAL 72
Query: 273 SNPXQYKIPXWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRV 452
NP +Y IP W NR++D GK L ++ + D++R +I + RG RH GL V
Sbjct: 73 RNPWKYGIPSWLYNRRRDPETGKDLHLVGNDYKITMEFDIKREMQINSWRGYRHREGLPV 132
Query: 453 RGQHTKTTGRXG 488
RGQ T++ R G
Sbjct: 133 RGQRTRSHHRKG 144
>UniRef50_Q00VP7 Cluster: Chromosome 14 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 14 contig 1, DNA
sequence - Ostreococcus tauri
Length = 272
Score = 75.4 bits (177), Expect = 6e-13
Identities = 42/135 (31%), Positives = 70/135 (51%)
Frame = -2
Query: 464 VLTTHTKAPVMSHPSVSANLLEPLQIFTEF*IQVGGGQLAVFTINNILLPI*EPVWYLIL 285
VLTT T APV+S SV +NLL+ L++ + +++ G L I I+L + EP+ L
Sbjct: 44 VLTTDTDAPVVSQTSVVSNLLQTLEVVAQLRVELVGHHLRELAILEIVLAVQEPIRNSEL 103
Query: 284 XRIRHDSDNFFNLFFCAFASTLVKINVGFFENNVGVPPANTFDSRHRKHNLSFAIDVRIH 105
R+ HD F L L +I++ F + VG A+ D H+L ++V +
Sbjct: 104 SRVGHDHHQRFQLRGGELPGALPEIDLSLFAHQVGEAAADPLDLGQGVHHLLTTVNVGVE 163
Query: 104 DTKNMLKFVWNDQRH 60
D ++L+ + +D+ H
Sbjct: 164 DADDVLEIITDDEAH 178
>UniRef50_Q9X1I5 Cluster: 30S ribosomal protein S13; n=14;
Bacteria|Rep: 30S ribosomal protein S13 - Thermotoga
maritima
Length = 125
Score = 62.1 bits (144), Expect = 6e-09
Identities = 43/128 (33%), Positives = 67/128 (52%)
Frame = +3
Query: 99 RIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKIITIMSN 278
RI+ + +KV A+T I G+GR S +LK ID +KR G+ T+EE+ KI + +
Sbjct: 3 RIVGVELPNNKKVWVALTYIYGIGRSRSFEILKNTGIDPEKRVGDLTDEEISKITKYIQD 62
Query: 279 PXQYKIPXWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRG 458
+K V+G+ L S++ ++ RL +I +RG+RH GL VRG
Sbjct: 63 --HFK------------VEGE--------LRSEVERNIRRLIEIGCYRGIRHKLGLPVRG 100
Query: 459 QHTKTTGR 482
Q T++ R
Sbjct: 101 QKTRSNAR 108
>UniRef50_UPI0001555DA0 Cluster: PREDICTED: similar to olfactory
specific medium-chain acyl CoA synthetase; n=1;
Ornithorhynchus anatinus|Rep: PREDICTED: similar to
olfactory specific medium-chain acyl CoA synthetase -
Ornithorhynchus anatinus
Length = 176
Score = 55.2 bits (127), Expect = 7e-07
Identities = 22/28 (78%), Positives = 24/28 (85%)
Frame = +3
Query: 270 MSNPXQYKIPXWFLNRQKDIVDGKYSQL 353
M NP QYKIP WFLNRQKD+ DGKYSQ+
Sbjct: 1 MQNPRQYKIPDWFLNRQKDVKDGKYSQV 28
>UniRef50_A6PT06 Cluster: Ribosomal protein S13; n=1; Victivallis
vadensis ATCC BAA-548|Rep: Ribosomal protein S13 -
Victivallis vadensis ATCC BAA-548
Length = 131
Score = 54.0 bits (124), Expect = 2e-06
Identities = 39/128 (30%), Positives = 63/128 (49%)
Frame = +3
Query: 99 RIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKIITIMSN 278
RI+ +I G ++V F++ + GVG + +++K ID D +A + T +++ I I+
Sbjct: 3 RIIGVDIPGNKRVEFSLRYLYGVGPAKALEIIQKVGIDPDLKAKDLTPDQIGAITKIL-- 60
Query: 279 PXQYKIPXWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRG 458
Q D+ L +L L D+ RL++I +RG+RH L VRG
Sbjct: 61 -------------QDDL-------LVEGDLRRTLAADIRRLQQINCYRGIRHRRSLPVRG 100
Query: 459 QHTKTTGR 482
Q TKT R
Sbjct: 101 QRTKTNAR 108
>UniRef50_Q7QRY8 Cluster: GLP_549_7513_8304; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_549_7513_8304 - Giardia lamblia ATCC
50803
Length = 263
Score = 49.2 bits (112), Expect = 5e-05
Identities = 40/143 (27%), Positives = 63/143 (44%), Gaps = 4/143 (2%)
Frame = -2
Query: 476 SSLSVLTTHTKAPVMSHPSVSANLLEPLQIFTEF*IQVGGG---QLAVFTINNILLPI*E 306
S L VL + + V++ +++A+ E LQ+ T + G G + VF I++ I
Sbjct: 25 SGLCVLPANLQVVVVADTALAASFTETLQVRT---VGRGYGIDQNVHVFARFKIIVTIKH 81
Query: 305 PVWYLILXRIRHDSDNFFNLFFCAFASTLVKINVGFFENNVGVPPANTFDSRHRKHNLSF 126
P W + + D L C S V +NVGF E N+G N +S
Sbjct: 82 PGWNAVGEGVLKDLHESILLGRCELTSAFVNVNVGFLEGNIGKAAPNPLNSDKGTLKYDL 141
Query: 125 AIDVRIHDTKNMLKFV-WNDQRH 60
A+DV + T+ + V ND+ H
Sbjct: 142 ALDVCVKHTQEVPVVVGLNDRCH 164
>UniRef50_Q2JL76 Cluster: 30S ribosomal protein S13; n=212; cellular
organisms|Rep: 30S ribosomal protein S13 - Synechococcus
sp. (strain JA-2-3B'a(2-13)) (Cyanobacteria
bacteriumYellowstone B-Prime)
Length = 127
Score = 49.2 bits (112), Expect = 5e-05
Identities = 39/128 (30%), Positives = 60/128 (46%)
Frame = +3
Query: 99 RIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKIITIMSN 278
RI +I +++V A+T I G+G S +L K I+ D R + T+ EV + T+
Sbjct: 3 RIAGVDIPREKRVEIALTYIYGIGLTRSRQILAKTGINPDTRTRDLTDAEVAALRTV--- 59
Query: 279 PXQYKIPXWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRG 458
V+G+Y +L + +++RL I +RG RH GL VRG
Sbjct: 60 -----------------VEGEYQ--VEGDLRRQEAMNIKRLIDIGTYRGRRHRLGLPVRG 100
Query: 459 QHTKTTGR 482
Q T+T R
Sbjct: 101 QRTRTNAR 108
>UniRef50_Q601J1 Cluster: 30S ribosomal protein S13; n=3; Mycoplasma
hyopneumoniae|Rep: 30S ribosomal protein S13 -
Mycoplasma hyopneumoniae (strain 232)
Length = 137
Score = 48.8 bits (111), Expect = 6e-05
Identities = 33/129 (25%), Positives = 67/129 (51%), Gaps = 1/129 (0%)
Frame = +3
Query: 99 RIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKIITIMSN 278
R++N I ++++ A+ +I G+G+ + +++K + EE+ K I++
Sbjct: 3 RVLNVEIPNHKRIVIALCSIFGIGKSLATEIVEKT--------AKLQEEKFGKKFPILTE 54
Query: 279 PXQYK-IPXWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVR 455
+ K I L +D+ + T +L +++ +++RL +I+ +RG+RH GL VR
Sbjct: 55 NTKVKEINEEVLQVIRDVAK---TYKTEGDLHREVQSNIKRLIEIKCYRGIRHRKGLPVR 111
Query: 456 GQHTKTTGR 482
GQ T+ R
Sbjct: 112 GQVTQKNAR 120
>UniRef50_O66486 Cluster: 30S ribosomal protein S13; n=28; cellular
organisms|Rep: 30S ribosomal protein S13 - Aquifex
aeolicus
Length = 126
Score = 48.8 bits (111), Expect = 6e-05
Identities = 35/128 (27%), Positives = 60/128 (46%)
Frame = +3
Query: 99 RIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKIITIMSN 278
RI ++ +++ A+T I G+G + + +K I KR GE T +E
Sbjct: 3 RIAGVDLPNNKRLEVALTYIYGIGWSRAREICEKTGIPCTKRVGELTPDE---------- 52
Query: 279 PXQYKIPXWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRG 458
LN + +D Y +L +++ ++++LK + +RG+RH GL VRG
Sbjct: 53 ----------LNTLRKFIDENYK--VEGDLRREVQLNIKKLKDMGCYRGIRHARGLPVRG 100
Query: 459 QHTKTTGR 482
Q T+T R
Sbjct: 101 QQTRTNAR 108
>UniRef50_A7PUB9 Cluster: Chromosome chr7 scaffold_31, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr7 scaffold_31, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 48
Score = 48.4 bits (110), Expect = 8e-05
Identities = 19/41 (46%), Positives = 29/41 (70%)
Frame = +2
Query: 50 LNQNVAGHSRQISTYSSYHEYEHRWQTKGYVCDDGYQRCWP 172
L+ +V G R IST++S ++E RW+T+ +VC D +QR WP
Sbjct: 5 LSMSVLGSERGISTHTSCAQHERRWETEDHVCSDLHQRYWP 45
>UniRef50_Q6G2Y7 Cluster: 30S ribosomal protein S13; n=20; cellular
organisms|Rep: 30S ribosomal protein S13 - Bartonella
henselae (Rochalimaea henselae)
Length = 122
Score = 46.8 bits (106), Expect = 3e-04
Identities = 34/128 (26%), Positives = 60/128 (46%)
Frame = +3
Query: 99 RIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKIITIMSN 278
RI NI ++V+ A+ I G+G +++ + KK I + +R E ++ EV +I
Sbjct: 3 RIAGVNIPTNKRVIIALQYIHGIGPKFAQEITKKVGIPIGRRVHELSDAEVLQI------ 56
Query: 279 PXQYKIPXWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRG 458
++ +D Y +L ++ +++RL + +RG+RH L VRG
Sbjct: 57 --------------REAIDQGYQ--VEGDLRREVAMNVKRLMDLGCYRGLRHRRSLPVRG 100
Query: 459 QHTKTTGR 482
Q T T R
Sbjct: 101 QRTHTNAR 108
>UniRef50_Q5NQ42 Cluster: 30S ribosomal protein S13; n=107; cellular
organisms|Rep: 30S ribosomal protein S13 - Zymomonas
mobilis
Length = 122
Score = 45.6 bits (103), Expect = 6e-04
Identities = 34/128 (26%), Positives = 60/128 (46%)
Frame = +3
Query: 99 RIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKIITIMSN 278
RI NI ++V A+T I G+G + ++ K I ++R + ++ EV +I
Sbjct: 3 RIAGVNIPTNKRVEIALTYIHGIGPTTAKKIVTKLGIAPERRVQDLSDNEVLQI------ 56
Query: 279 PXQYKIPXWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRG 458
++ +D Y+ +L ++ +++RL + +RG+RH GL VRG
Sbjct: 57 --------------REAIDADYT--VEGDLRRQVAMNIKRLMDLACYRGLRHRKGLPVRG 100
Query: 459 QHTKTTGR 482
Q T T R
Sbjct: 101 QRTHTNAR 108
>UniRef50_Q8FS35 Cluster: 30S ribosomal protein S13; n=42;
Bacteria|Rep: 30S ribosomal protein S13 -
Corynebacterium efficiens
Length = 122
Score = 43.2 bits (97), Expect = 0.003
Identities = 29/128 (22%), Positives = 61/128 (47%)
Frame = +3
Query: 99 RIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKIITIMSN 278
R+ ++ +++ A+T I G+G + +L++ + D R T+E++ +
Sbjct: 3 RLAGVDLPRNKRMEIALTYIYGIGPARAKQLLEETGVSPDLRTDNLTDEQIASL------ 56
Query: 279 PXQYKIPXWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRG 458
+D+++ + +L +++ D+ R +I +++G+RH GL VRG
Sbjct: 57 --------------RDVIEATWK--VEGDLRREVQADIRRKIEIGSYQGLRHRRGLPVRG 100
Query: 459 QHTKTTGR 482
Q TKT R
Sbjct: 101 QRTKTNAR 108
>UniRef50_Q6A6Q8 Cluster: 30S ribosomal protein S13; n=32; cellular
organisms|Rep: 30S ribosomal protein S13 -
Propionibacterium acnes
Length = 123
Score = 41.1 bits (92), Expect = 0.013
Identities = 32/128 (25%), Positives = 58/128 (45%)
Frame = +3
Query: 99 RIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKIITIMSN 278
R++ ++ +++ A+T I G+GR + LK I D R E T++++ +
Sbjct: 3 RLIGVDLPRDKRLEVALTYIYGIGRTRATETLKATGISGDLRVHELTDDQLVAL------ 56
Query: 279 PXQYKIPXWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRG 458
+D ++ Y +L ++ D+ R +I ++G RH GL VRG
Sbjct: 57 --------------RDHIEANYH--VEGDLRREVAADIRRKIEIGTYQGRRHRSGLPVRG 100
Query: 459 QHTKTTGR 482
Q T+T R
Sbjct: 101 QRTRTNAR 108
>UniRef50_Q6CFI9 Cluster: Yarrowia lipolytica chromosome B of strain
CLIB122 of Yarrowia lipolytica; n=2;
Saccharomycetales|Rep: Yarrowia lipolytica chromosome B
of strain CLIB122 of Yarrowia lipolytica - Yarrowia
lipolytica (Candida lipolytica)
Length = 156
Score = 40.7 bits (91), Expect = 0.017
Identities = 17/41 (41%), Positives = 27/41 (65%)
Frame = +3
Query: 360 SNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQHTKTTGR 482
S+L K+ D+ER +K ++ G RH G+ V+GQ T+T G+
Sbjct: 70 SDLAKKINADIERKRKTGSYVGRRHVMGMPVKGQKTRTNGK 110
>UniRef50_Q2TUB5 Cluster: Ribosomal protein S13; n=1; Dictyota
dichotoma|Rep: Ribosomal protein S13 - Dictyota
dichotoma
Length = 115
Score = 40.3 bits (90), Expect = 0.022
Identities = 34/127 (26%), Positives = 59/127 (46%)
Frame = +3
Query: 102 IMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKIITIMSNP 281
I+ T+ ++ V+F+++ I G+G S I+ K+ I LD R + +++ I+ N
Sbjct: 4 IVGTSFSAEKSVLFSLSYIFGIGSYRSRILCNKSGIGLDCRFCDIDYDQIR----ILEN- 58
Query: 282 XQYKIPXWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQ 461
+++ +L S L+ E + R I +RG+RH GL VRGQ
Sbjct: 59 ---------------LIEASSFRLGQS-LEKYQIERIRRFYGIMCYRGLRHKRGLPVRGQ 102
Query: 462 HTKTTGR 482
T T +
Sbjct: 103 RTHTNAK 109
>UniRef50_Q0QIP8 Cluster: Ribosomal protein S13; n=1;
Oltmannsiellopsis viridis|Rep: Ribosomal protein S13 -
Oltmannsiellopsis viridis (Marine flagellate)
Length = 117
Score = 40.3 bits (90), Expect = 0.022
Identities = 18/33 (54%), Positives = 24/33 (72%)
Frame = +3
Query: 375 KLREDLERLKKIRAHRGMRHYWGLRVRGQHTKT 473
K RE+++RL +I ++RG RH GL RGQ TKT
Sbjct: 72 KKRENIQRLVRISSYRGFRHTAGLPCRGQRTKT 104
>UniRef50_A6RYD3 Cluster: Putative uncharacterized protein; n=1;
Botryotinia fuckeliana B05.10|Rep: Putative
uncharacterized protein - Botryotinia fuckeliana B05.10
Length = 82
Score = 40.3 bits (90), Expect = 0.022
Identities = 16/38 (42%), Positives = 29/38 (76%)
Frame = +3
Query: 360 SNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQHTKT 473
+ L +L++++ER++ + ++RG RH GL VRGQ+TK+
Sbjct: 5 TELKRRLQDNIERMRTMGSYRGRRHAMGLPVRGQNTKS 42
>UniRef50_Q8W9S0 Cluster: Ribosomal protein S13; n=1; Mesostigma
viride|Rep: Ribosomal protein S13 - Mesostigma viride
Length = 116
Score = 39.5 bits (88), Expect = 0.039
Identities = 18/39 (46%), Positives = 26/39 (66%)
Frame = +3
Query: 366 LDSKLREDLERLKKIRAHRGMRHYWGLRVRGQHTKTTGR 482
L +++ + ERL KI ++RG RH+ GL RGQ T+T R
Sbjct: 72 LINRIHLNKERLIKISSYRGFRHHRGLPARGQRTRTNAR 110
>UniRef50_Q4WP11 Cluster: 40S ribosomal protein S13; n=5;
Eurotiomycetidae|Rep: 40S ribosomal protein S13 -
Aspergillus fumigatus (Sartorya fumigata)
Length = 169
Score = 39.5 bits (88), Expect = 0.039
Identities = 17/38 (44%), Positives = 28/38 (73%)
Frame = +3
Query: 360 SNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQHTKT 473
++L ++ +D++RLK+ ++RG RH GL VRGQ T+T
Sbjct: 103 NDLRRQILDDIKRLKESGSYRGRRHALGLPVRGQRTRT 140
>UniRef50_O59772 Cluster: Mitochondrial ribosomal protein subunit
S37; n=1; Schizosaccharomyces pombe|Rep: Mitochondrial
ribosomal protein subunit S37 - Schizosaccharomyces
pombe (Fission yeast)
Length = 151
Score = 39.5 bits (88), Expect = 0.039
Identities = 17/32 (53%), Positives = 22/32 (68%)
Frame = +3
Query: 387 DLERLKKIRAHRGMRHYWGLRVRGQHTKTTGR 482
D+ RL IR +RGMRH GL V GQ+T+T +
Sbjct: 76 DISRLVNIRCYRGMRHVNGLPVNGQNTRTNAK 107
>UniRef50_A1CXK9 Cluster: 40S ribosomal protein S13; n=7;
Pezizomycotina|Rep: 40S ribosomal protein S13 -
Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / NRRL
181)(Aspergillus fischerianus (strain ATCC 1020 / DSM
3700 / NRRL 181))
Length = 118
Score = 39.5 bits (88), Expect = 0.039
Identities = 17/38 (44%), Positives = 28/38 (73%)
Frame = +3
Query: 360 SNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQHTKT 473
++L ++ +D++RLK+ ++RG RH GL VRGQ T+T
Sbjct: 66 NDLRRQILDDIKRLKESGSYRGRRHALGLPVRGQRTRT 103
>UniRef50_Q9TCB7 Cluster: Ribosomal protein S13; n=1; Nephroselmis
olivacea|Rep: Ribosomal protein S13 - Nephroselmis
olivacea
Length = 125
Score = 39.1 bits (87), Expect = 0.052
Identities = 31/127 (24%), Positives = 55/127 (43%)
Frame = +3
Query: 102 IMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKIITIMSNP 281
I NT + K+KV A+ I G+G + + + + + + + +VE++ ++S
Sbjct: 4 IANTYLSQKQKVSIALQQIYGIGSHLAYQICDQLGLSPNFKIEQLNRNQVEQLSLLVSQ- 62
Query: 282 XQYKIPXWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQ 461
S +T S L +++D+ RL I +RG R+ L VRGQ
Sbjct: 63 ---------------------SYVTGSKLKRTIQQDMSRLISISCYRGFRYIQKLPVRGQ 101
Query: 462 HTKTTGR 482
T T +
Sbjct: 102 RTHTNAK 108
>UniRef50_O21258 Cluster: Ribosomal protein S13; n=1; Reclinomonas
americana|Rep: Ribosomal protein S13 - Reclinomonas
americana
Length = 122
Score = 38.7 bits (86), Expect = 0.069
Identities = 28/130 (21%), Positives = 57/130 (43%)
Frame = +3
Query: 93 ILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKIITIM 272
++ + NI+ +K+ FA+ AI G+G + + + ++ + + E ++ K+ +
Sbjct: 1 MIHLFGININSNKKIPFALKAIYGLGNKKVDELCSYMGLNPKLKMSDLNESQISKLCHYI 60
Query: 273 SNPXQYKIPXWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRV 452
+ L S L +++RL I+++RG+RH +GL V
Sbjct: 61 EE----------------------NFLIESELRKNQTYNIKRLLDIKSYRGLRHAYGLPV 98
Query: 453 RGQHTKTTGR 482
GQ T T +
Sbjct: 99 HGQRTHTNAK 108
>UniRef50_Q3S2A2 Cluster: Ribosomal protein S13; n=1; Thalassiosira
pseudonana|Rep: Ribosomal protein S13 - Thalassiosira
pseudonana (Marine diatom)
Length = 115
Score = 37.9 bits (84), Expect = 0.12
Identities = 27/127 (21%), Positives = 59/127 (46%)
Frame = +3
Query: 102 IMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKIITIMSNP 281
I+ T + + + F++T + G+G+ S ++ K+ + + + + T ++ K++ + N
Sbjct: 4 ILETELPEDKSIYFSLTKVFGIGKFQSLLICKRLGLSSNCKLSKLTSDQTIKLVKSIENA 63
Query: 282 XQYKIPXWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQ 461
+ + +SNL L++L +I+ ++G+R GL VRGQ
Sbjct: 64 ---------------------NLVINSNLRKSKTILLKKLIQIKTYKGIRRLRGLPVRGQ 102
Query: 462 HTKTTGR 482
T T +
Sbjct: 103 RTHTNAK 109
>UniRef50_Q5B4R2 Cluster: Putative uncharacterized protein; n=1;
Emericella nidulans|Rep: Putative uncharacterized
protein - Emericella nidulans (Aspergillus nidulans)
Length = 130
Score = 37.9 bits (84), Expect = 0.12
Identities = 16/41 (39%), Positives = 27/41 (65%)
Frame = +3
Query: 360 SNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQHTKTTGR 482
++L ++ +D++RLK+ +RG RH GL VRGQ T+ +
Sbjct: 65 NDLRRQVLDDIKRLKETGTYRGRRHALGLPVRGQRTRNNNK 105
>UniRef50_Q5A357 Cluster: Potential mitochondrial ribosomal protein
S13; n=2; Saccharomycetales|Rep: Potential mitochondrial
ribosomal protein S13 - Candida albicans (Yeast)
Length = 122
Score = 37.9 bits (84), Expect = 0.12
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = +3
Query: 351 LTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQHTKTTG 479
L +L K+ D++ + I ++ G RH G VRGQ TKT G
Sbjct: 66 LVEGHLKHKINNDIKMKRTIGSYAGSRHALGFPVRGQRTKTNG 108
>UniRef50_P42732 Cluster: 30S ribosomal protein S13, chloroplast
precursor; n=6; cellular organisms|Rep: 30S ribosomal
protein S13, chloroplast precursor - Arabidopsis
thaliana (Mouse-ear cress)
Length = 169
Score = 37.1 bits (82), Expect = 0.21
Identities = 16/31 (51%), Positives = 22/31 (70%)
Frame = +3
Query: 390 LERLKKIRAHRGMRHYWGLRVRGQHTKTTGR 482
++RLK+I+ +RG+RH GL RGQ TK R
Sbjct: 122 IKRLKEIQCYRGVRHIQGLPCRGQRTKNNCR 152
>UniRef50_P46747 Cluster: Mitochondrial ribosomal protein S13; n=1;
Prototheca wickerhamii|Rep: Mitochondrial ribosomal
protein S13 - Prototheca wickerhamii
Length = 119
Score = 36.7 bits (81), Expect = 0.28
Identities = 17/43 (39%), Positives = 26/43 (60%)
Frame = +3
Query: 354 TSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQHTKTTGR 482
T S++ R++++RL I ++RG RH GL VRGQ + R
Sbjct: 66 TGSDVRRFTRQNIQRLVNIHSYRGYRHIQGLPVRGQRSHGNAR 108
>UniRef50_P08977 Cluster: Mitochondrial ribosomal protein S13;
n=160; Embryophyta|Rep: Mitochondrial ribosomal protein
S13 - Zea mays (Maize)
Length = 129
Score = 36.3 bits (80), Expect = 0.37
Identities = 17/34 (50%), Positives = 21/34 (61%)
Frame = +3
Query: 381 REDLERLKKIRAHRGMRHYWGLRVRGQHTKTTGR 482
R D+ERL I +RG+RH G +RGQ T T R
Sbjct: 75 RADIERLISISRYRGIRHQDGSPLRGQRTHTNAR 108
>UniRef50_P15758 Cluster: Mitochondrial ribosomal protein S13; n=4;
Magnoliophyta|Rep: Mitochondrial ribosomal protein S13 -
Oenothera bertiana (Bertero's evening primrose)
Length = 114
Score = 35.9 bits (79), Expect = 0.48
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = +3
Query: 381 REDLERLKKIRAHRGMRHYWGLRVRGQHTKTTGR 482
R D+ER I +RG+RH GL +RGQ + T R
Sbjct: 73 RADIERFISISCYRGIRHQDGLPLRGQRSHTNAR 106
>UniRef50_Q7PY55 Cluster: ENSANGP00000013280; n=4;
Endopterygota|Rep: ENSANGP00000013280 - Anopheles
gambiae str. PEST
Length = 183
Score = 35.5 bits (78), Expect = 0.64
Identities = 24/51 (47%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Frame = +3
Query: 117 IDGKRKVMFAMTAIKGVGRRYSNIVLK---KADI-DLDKRAGECTEEEVEK 257
+D K KV A G+GR +S +LK K I DLD AGE T EE+EK
Sbjct: 1 MDLKNKVALVTGAATGLGRAFSEELLKHGAKVVICDLDSDAGELTVEELEK 51
>UniRef50_Q9CA19 Cluster: Small ribosomal subunit protein S13,
mitochondrial precursor; n=2; Arabidopsis thaliana|Rep:
Small ribosomal subunit protein S13, mitochondrial
precursor - Arabidopsis thaliana (Mouse-ear cress)
Length = 154
Score = 35.5 bits (78), Expect = 0.64
Identities = 37/155 (23%), Positives = 71/155 (45%)
Frame = +3
Query: 18 LFVVLGTLVRNLTKMSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLK 197
LF + +L+RN+T L + +R+ N + + + + + G+GRR S+ VL
Sbjct: 11 LFDISQSLLRNVTFHGLRVQG-----IRVGNAEVPNNKPLKTGLQEVYGIGRRKSHQVLC 65
Query: 198 KADIDLDKRAGECTEEEVEKIITIMSNPXQYKIPXWFLNRQKDIVDGKYSQLTSSNLDSK 377
I +K A + T +E+ ++ ++++ G++ L +
Sbjct: 66 HLGIT-NKLARDLTGKEL-------------------IDLREEV--GQHQH--GDELRRR 101
Query: 378 LREDLERLKKIRAHRGMRHYWGLRVRGQHTKTTGR 482
+ +++RL ++ +RG RH GL RGQ T T R
Sbjct: 102 VGSEIQRLVEVDCYRGSRHRHGLPCRGQRTSTNAR 136
>UniRef50_Q2GEB8 Cluster: 30S ribosomal protein S13; n=2;
Rickettsiales|Rep: 30S ribosomal protein S13 -
Neorickettsia sennetsu (strain Miyayama)
Length = 123
Score = 35.5 bits (78), Expect = 0.64
Identities = 27/129 (20%), Positives = 53/129 (41%)
Frame = +3
Query: 96 LRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKIITIMS 275
+R + N+ + V+ A+T + G+G + + ID + + +E++ I+ +
Sbjct: 1 MRFLGVNLPDNKAVVVALTYLYGIGLPTARKICSSLAIDGSAKLPDLEQEQLNSIMAYIK 60
Query: 276 NPXQYKIPXWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVR 455
N ++ L + ++ L I+ +RG+RH L VR
Sbjct: 61 NDIPFE----------------------GELRKSVAFSIKHLVDIKCYRGVRHRKNLPVR 98
Query: 456 GQHTKTTGR 482
GQ T+T R
Sbjct: 99 GQRTRTNAR 107
>UniRef50_Q8M1G5 Cluster: Ribosomal protein S13; n=1;
Chaetosphaeridium globosum|Rep: Ribosomal protein S13 -
Chaetosphaeridium globosum
Length = 122
Score = 35.1 bits (77), Expect = 0.84
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +3
Query: 378 LREDLERLKKIRAHRGMRHYWGLRVRGQHTKTTGR 482
++ D+ RL I +RG+RH GL +RGQ T T +
Sbjct: 78 VQTDIRRLVTIGCYRGLRHIAGLPLRGQRTHTNAK 112
>UniRef50_Q5CLQ5 Cluster: COG1752: esterase of the alpha-beta
hydrolase superfamily; n=2; Cryptosporidium|Rep:
COG1752: esterase of the alpha-beta hydrolase
superfamily - Cryptosporidium hominis
Length = 794
Score = 34.7 bits (76), Expect = 1.1
Identities = 29/116 (25%), Positives = 49/116 (42%), Gaps = 5/116 (4%)
Frame = +3
Query: 78 DKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEK 257
+ F +L+ +N +I K + + + SN K DK+ + E
Sbjct: 645 NSFVVVLKSLNDDIQRLNKTLITIDSFLKSSNNISNKATKLLKYIEDKQKKGIFSAKFED 704
Query: 258 IITIMSNPXQYK-----IPXWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKI 410
+IT++S Y I +N ++ IVD K+SQL + + LRE E K+
Sbjct: 705 VITLLSLYEDYVEKLQGIRIKEINSRRIIVDSKHSQLILARIIIALREQNEHFPKL 760
>UniRef50_P46760 Cluster: Mitochondrial ribosomal protein S13; n=1;
Acanthamoeba castellanii|Rep: Mitochondrial ribosomal
protein S13 - Acanthamoeba castellanii (Amoeba)
Length = 119
Score = 34.7 bits (76), Expect = 1.1
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = +3
Query: 369 DSKLREDLERLKKIRAHRGMRHYWGLRVRGQHTKTTGR 482
++K+ ++ + KKI+ + GMRH L VRGQ T T +
Sbjct: 72 ENKIFNNVNKKKKIKNYTGMRHILKLPVRGQRTHTNAK 109
>UniRef50_Q9G886 Cluster: Ribosomal protein S13; n=1; Malawimonas
jakobiformis|Rep: Ribosomal protein S13 - Malawimonas
jakobiformis
Length = 126
Score = 34.3 bits (75), Expect = 1.5
Identities = 19/54 (35%), Positives = 30/54 (55%)
Frame = +3
Query: 321 KDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQHTKTTGR 482
+ IV+ KY S +L + +++R I+++RG+RH VRGQ T T R
Sbjct: 57 RKIVNNKYK--ISGDLRRIISINIKRYIDIKSYRGLRHKLSYPVRGQRTHTNAR 108
>UniRef50_Q8M0B4 Cluster: Ribosomal protein S13; n=1; Amoebidium
parasiticum|Rep: Ribosomal protein S13 - Amoebidium
parasiticum
Length = 130
Score = 33.9 bits (74), Expect = 2.0
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +3
Query: 363 NLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQHTKT 473
NL + + + L+ I+ ++G+RH GL V GQ TKT
Sbjct: 85 NLRAAMNAKILTLQNIKTYKGIRHKKGLPVNGQRTKT 121
>UniRef50_Q8LPW2 Cluster: Small ribosomal subunit protein S13,
mitochondrial precursor; n=1; Glycine max|Rep: Small
ribosomal subunit protein S13, mitochondrial precursor -
Glycine max (Soybean)
Length = 148
Score = 33.9 bits (74), Expect = 2.0
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = +3
Query: 351 LTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQHTKTTGR 482
L ++L + D+ RL I+ +RG+RH L RGQ T T R
Sbjct: 93 LIGNDLKKCVERDVGRLVGIQCYRGIRHVDSLPCRGQRTHTNAR 136
>UniRef50_A5FGA8 Cluster: DNA-(Apurinic or apyrimidinic site) lyase;
n=1; Flavobacterium johnsoniae UW101|Rep: DNA-(Apurinic
or apyrimidinic site) lyase - Flavobacterium johnsoniae
UW101
Length = 216
Score = 33.5 bits (73), Expect = 2.6
Identities = 16/46 (34%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Frame = +3
Query: 75 PDKFQHILRIMNT--NIDGKRKVMFAMTAIKGVGRRYSNIVLKKAD 206
P K Q +L I +T N + M +TA+KG+GR+ +N++L++ +
Sbjct: 87 PTKAQWLLEIAHTIQNDNDIPLTMSGLTALKGIGRKSANVILRETE 132
>UniRef50_A6YEC0 Cluster: Ribosomal protein S13; n=1; Chlorokybus
atmophyticus|Rep: Ribosomal protein S13 - Chlorokybus
atmophyticus (Soil alga)
Length = 121
Score = 33.5 bits (73), Expect = 2.6
Identities = 18/58 (31%), Positives = 31/58 (53%)
Frame = +3
Query: 309 LNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQHTKTTGR 482
++R +V+ +Y T L + +D++R +I +RG RH L +RGQ T + R
Sbjct: 53 IDRLTRLVNQQY--FTGPELRRLISQDIKRFIRIGCYRGFRHNDALPLRGQRTHSNAR 108
>UniRef50_A5BVY1 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 1100
Score = 33.5 bits (73), Expect = 2.6
Identities = 23/97 (23%), Positives = 46/97 (47%)
Frame = +3
Query: 183 NIVLKKADIDLDKRAGECTEEEVEKIITIMSNPXQYKIPXWFLNRQKDIVDGKYSQLTSS 362
N V + + I KR G + E +E++I + + + + GKY+++ +
Sbjct: 311 NRVNENSSILWHKRLGHISREMMERLI---KDEILTSLDFSDFTSCVECIKGKYTKIYKA 367
Query: 363 NLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQHTKT 473
+++++L R+K +R+ RG +Y GQH T
Sbjct: 368 DVENQLNR---RIKSVRSDRGGEYYARFTKSGQHLST 401
>UniRef50_A7BWB3 Cluster: Putative uncharacterized protein; n=1;
Beggiatoa sp. PS|Rep: Putative uncharacterized protein -
Beggiatoa sp. PS
Length = 742
Score = 33.1 bits (72), Expect = 3.4
Identities = 15/76 (19%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Frame = +3
Query: 216 DKRAGECTEEEVEKIITIMSNPXQYKIP-XWFLNRQKDIVDGKYSQLTSSNLDSKLREDL 392
DKR E+++K++ + P Q K+ ++ +++ SQ++ + L +++D
Sbjct: 76 DKRVSRVAREKLDKLLELQERPAQIKVKCEAICSKLENLARRLTSQISDAQLVKAVQDDT 135
Query: 393 ERLKKIRAHRGMRHYW 440
+ LK+ + ++ W
Sbjct: 136 KILKENNEFKNLQESW 151
>UniRef50_A3V4I8 Cluster: 30S ribosomal protein S13; n=1; Loktanella
vestfoldensis SKA53|Rep: 30S ribosomal protein S13 -
Loktanella vestfoldensis SKA53
Length = 104
Score = 33.1 bits (72), Expect = 3.4
Identities = 28/112 (25%), Positives = 51/112 (45%)
Frame = +3
Query: 147 MTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKIITIMSNPXQYKIPXWFLNRQKD 326
MT I G+G + + + +ID +R + ++ E I+TI ++
Sbjct: 1 MTYITGIGPAIAEQICEATNIDRARRVNDLSDAE---ILTI-----------------RE 40
Query: 327 IVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQHTKTTGR 482
+D + +L + + +++RL + +RG+RH L VRGQ T T R
Sbjct: 41 FIDANLT--VEGDLRRETQMNIKRLMDLGCYRGLRHRRNLPVRGQRTHTNAR 90
>UniRef50_Q8LWZ6 Cluster: Ribosomal protein S13; n=4;
Phaeophyceae|Rep: Ribosomal protein S13 - Laminaria
digitata
Length = 119
Score = 33.1 bits (72), Expect = 3.4
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +3
Query: 384 EDLERLKKIRAHRGMRHYWGLRVRGQHTKTTGR 482
+ + RL I +RG+RH GL VRGQ T T +
Sbjct: 77 DKIRRLCVISTYRGLRHRKGLPVRGQRTHTNAK 109
>UniRef50_Q6UVP6 Cluster: Ribosomal protein S13; n=1;
Pseudendoclonium akinetum|Rep: Ribosomal protein S13 -
Pseudendoclonium akinetum (Green alga)
Length = 119
Score = 33.1 bits (72), Expect = 3.4
Identities = 18/52 (34%), Positives = 28/52 (53%)
Frame = +3
Query: 318 QKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQHTKT 473
Q +++ +L +SN + E ++ L KI +RG RH L RGQ T+T
Sbjct: 51 QLELLTKSCRRLIASNKKREKVEAIKSLIKISCYRGTRHMNALPCRGQRTRT 102
>UniRef50_A0NKF0 Cluster: Rhamnosyltransferase; n=1; Oenococcus oeni
ATCC BAA-1163|Rep: Rhamnosyltransferase - Oenococcus
oeni ATCC BAA-1163
Length = 311
Score = 32.7 bits (71), Expect = 4.5
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Frame = +3
Query: 87 QHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKIIT 266
QH ++ T + K +F + I + Y N + KK +L K GEC +E I
Sbjct: 215 QHSSNVVGTTGNNLFKKIFKIREI--FNKFYKNGLFKKQANELLKNYGECLSKEKRNAIN 272
Query: 267 I-MSNPXQYKIPXWFLNRQK 323
I +S+ Q K W L + K
Sbjct: 273 IFLSSNRQLKEVFWILKKIK 292
>UniRef50_P53937 Cluster: Mitochondrial 37S ribosomal protein SWS2;
n=8; Saccharomycetales|Rep: Mitochondrial 37S ribosomal
protein SWS2 - Saccharomyces cerevisiae (Baker's yeast)
Length = 143
Score = 32.7 bits (71), Expect = 4.5
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +3
Query: 378 LREDLERLKKIRAHRGMRHYWGLRVRGQHTKTTGR 482
+++++ +KI ++ GMRH L VRGQHT+ +
Sbjct: 75 VKDNIALKRKIGSYSGMRHTLHLPVRGQHTRNNAK 109
>UniRef50_Q98JF7 Cluster: Mll1963 protein; n=1; Mesorhizobium
loti|Rep: Mll1963 protein - Rhizobium loti
(Mesorhizobium loti)
Length = 315
Score = 32.3 bits (70), Expect = 6.0
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = -2
Query: 236 AFASTLVKINVGFFENNVG-VPPANTFDSRHRK-HNLSFAIDVRIHDTKNML 87
AFA T V+ VGF++ VG + +D +K H+ +F DV + DTK L
Sbjct: 23 AFAETPVEPTVGFYKYTVGDIEVTAIYDGIWKKPHDPAFIKDVSVEDTKAAL 74
>UniRef50_Q7UWV7 Cluster: Putative uncharacterized protein; n=1;
Pirellula sp.|Rep: Putative uncharacterized protein -
Rhodopirellula baltica
Length = 432
Score = 32.3 bits (70), Expect = 6.0
Identities = 32/136 (23%), Positives = 58/136 (42%), Gaps = 3/136 (2%)
Frame = +3
Query: 36 TLVRNLTKMSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDL 215
TLV ++ ++S+ + DKF+ I I + + + + I + + + K A ++L
Sbjct: 55 TLVNDIEQLSISLSDKFEEIRLIHDLTANLELESDADDICIDMLNQLSVCVPWKTAIVEL 114
Query: 216 DKRAGECTEEEVEKIIT---IMSNPXQYKIPXWFLNRQKDIVDGKYSQLTSSNLDSKLRE 386
EC +E +++I I S I + + K DG +T N + R
Sbjct: 115 CPADAECVADEPDRLIVGQPISSQELDSMIAASWRHAAK--TDGIVRDITIVNQSDEPRL 172
Query: 387 DLERLKKIRAHRGMRH 434
+ RL + HRG H
Sbjct: 173 NNHRLMILPIHRGGTH 188
>UniRef50_A3IUX9 Cluster: Putative uncharacterized protein; n=1;
Cyanothece sp. CCY 0110|Rep: Putative uncharacterized
protein - Cyanothece sp. CCY 0110
Length = 227
Score = 32.3 bits (70), Expect = 6.0
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = +3
Query: 297 PXWFLNRQK--DIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQ 461
P W +++ ++ + + L D+ L DL+ K + A G+R YW + VRG+
Sbjct: 109 PTWEAGQRRYINLAEVRVPDLVGEVGDTTLATDLDEKKHLYAKLGIREYWVIDVRGK 165
>UniRef50_A0DZU7 Cluster: Chromosome undetermined scaffold_70, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_70,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 713
Score = 32.3 bits (70), Expect = 6.0
Identities = 13/49 (26%), Positives = 24/49 (48%)
Frame = +3
Query: 177 YSNIVLKKADIDLDKRAGECTEEEVEKIITIMSNPXQYKIPXWFLNRQK 323
Y + +K ++D K C ++E+EK + SNP + W + +K
Sbjct: 533 YMKVQGQKNELDFHKLINSCLDKEIEKNLKNFSNPATIDLYPWMIKYRK 581
>UniRef50_UPI0000F1D9F1 Cluster: PREDICTED: hypothetical protein;
n=1; Danio rerio|Rep: PREDICTED: hypothetical protein -
Danio rerio
Length = 1054
Score = 31.9 bits (69), Expect = 7.9
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = -2
Query: 482 PASSLSVLTTHTKAPVMSHPSVSANLLEPLQIFTEF*IQVGGGQ-LAVFTINNILLPI 312
P SLS LTT T +P+M PS S PL + + + + + F INNI++P+
Sbjct: 759 PCPSLSTLTTPTHSPLMRQPSAS-ETSTPLHLNSNAAATIRRRRGESPFDINNIVIPM 815
>UniRef50_A6LXE0 Cluster: Putative uncharacterized protein
precursor; n=1; Clostridium beijerinckii NCIMB 8052|Rep:
Putative uncharacterized protein precursor - Clostridium
beijerinckii NCIMB 8052
Length = 445
Score = 31.9 bits (69), Expect = 7.9
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Frame = +3
Query: 165 VGRRYSNIVLKKADIDLDKRAGECTEEEVE----KIITIMSNPXQYKIPXWFLNRQKDIV 332
V +RY+ I+LKK DID K E +++ K+ ++ P Q + LN+ +D +
Sbjct: 148 VTKRYNAIILKKIDIDKLKTGLEIKNNDLDALKIKVSVGLAIPNQLEDKQIELNKAQDEI 207
Query: 333 DGKYSQLTSSNLD 371
K + L +NLD
Sbjct: 208 KAKENSL-KNNLD 219
>UniRef50_Q9G8P6 Cluster: Ribosomal protein S13; n=1; Naegleria
gruberi|Rep: Ribosomal protein S13 - Naegleria gruberi
Length = 163
Score = 31.9 bits (69), Expect = 7.9
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Frame = +3
Query: 339 KYSQLTS-SNLDSKLREDL----ERLKKIRAHRGMRHYWGLRVRGQHTKTTGR 482
KY LT+ +NLD L +++ LK IR +G RH L VRGQ +T R
Sbjct: 81 KYFFLTNKNNLDHFLHKEMISCINVLKTIRCLKGKRHSTFLPVRGQRNRTNAR 133
>UniRef50_Q7RQE1 Cluster: Protein factor associated with
neutral-sphingomyelinase activation; n=3; Plasmodium
(Vinckeia)|Rep: Protein factor associated with
neutral-sphingomyelinase activation - Plasmodium yoelii
yoelii
Length = 1490
Score = 31.9 bits (69), Expect = 7.9
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -2
Query: 209 NVGFFENNVGVPPANTFDSRHRKHNL 132
N+ F NN PP NTF+ ++K+N+
Sbjct: 1189 NLSQFSNNCATPPINTFEKENQKYNV 1214
>UniRef50_Q47VK1 Cluster: LPS-assembly protein precursor; n=1;
Colwellia psychrerythraea 34H|Rep: LPS-assembly protein
precursor - Colwellia psychrerythraea (strain 34H / ATCC
BAA-681) (Vibriopsychroerythus)
Length = 771
Score = 31.9 bits (69), Expect = 7.9
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +3
Query: 297 PXWFLNRQKDIVDGKYSQLTSSNLDSKLREDLER-LKKIRAHRGMRHYWGLRVRGQHTKT 473
P WFLN + ++ Y Q + + S L E ++R L K+R H G+ L GQ +
Sbjct: 437 PSWFLNSEVKLMHTYYQQ-DNISAGSSLEETVDRTLPKVRIHAGVNFDRQLLAFGQSYRH 495
Query: 474 T 476
T
Sbjct: 496 T 496
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 490,243,307
Number of Sequences: 1657284
Number of extensions: 9529076
Number of successful extensions: 28854
Number of sequences better than 10.0: 79
Number of HSP's better than 10.0 without gapping: 28104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28837
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 28019067077
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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