Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_A15
(489 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1259.01c |rps1802|rps18-2, SPCC825.06c|40S ribosomal protein... 233 8e-63
SPBC16D10.11c |rps1801|rps18-1|40S ribosomal protein S18|Schizos... 233 8e-63
SPCC1795.07 |||mitochondrial ribosomal protein subunit S37 |Schi... 40 3e-04
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha... 26 2.7
SPAC227.07c |pab1||protein phosphatase regulatory subunit Pab1|S... 26 2.7
SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual 26 3.5
SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc... 25 4.6
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 25 6.1
SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 25 6.1
>SPCC1259.01c |rps1802|rps18-2, SPCC825.06c|40S ribosomal protein
S18|Schizosaccharomyces pombe|chr 3|||Manual
Length = 152
Score = 233 bits (571), Expect = 8e-63
Identities = 108/143 (75%), Positives = 124/143 (86%)
Frame = +3
Query: 60 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 239
MSLV+PD FQHILR++NTN+DGK KVMFAMT IKGVGRRY+NIV KKADID+ KRAGE T
Sbjct: 1 MSLVVPDNFQHILRLLNTNVDGKVKVMFAMTQIKGVGRRYANIVCKKADIDMSKRAGELT 60
Query: 240 EEEVEKIITIMSNPXQYKIPXWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAH 419
EE+E+I+TI+ NP Q+KIP WFLNRQKDI DGK QL ++N+DSKLREDLERLKKI+ H
Sbjct: 61 TEELERIVTIIQNPSQFKIPSWFLNRQKDINDGKSFQLLANNVDSKLREDLERLKKIQTH 120
Query: 420 RGMRHYWGLRVRGQHTKTTGRXG 488
RG+RH LRVRGQHTKTTGR G
Sbjct: 121 RGLRHALDLRVRGQHTKTTGRRG 143
>SPBC16D10.11c |rps1801|rps18-1|40S ribosomal protein
S18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 152
Score = 233 bits (571), Expect = 8e-63
Identities = 108/143 (75%), Positives = 124/143 (86%)
Frame = +3
Query: 60 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 239
MSLV+PD FQHILR++NTN+DGK KVMFAMT IKGVGRRY+NIV KKADID+ KRAGE T
Sbjct: 1 MSLVVPDNFQHILRLLNTNVDGKVKVMFAMTQIKGVGRRYANIVCKKADIDMSKRAGELT 60
Query: 240 EEEVEKIITIMSNPXQYKIPXWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAH 419
EE+E+I+TI+ NP Q+KIP WFLNRQKDI DGK QL ++N+DSKLREDLERLKKI+ H
Sbjct: 61 TEELERIVTIIQNPSQFKIPSWFLNRQKDINDGKSFQLLANNVDSKLREDLERLKKIQTH 120
Query: 420 RGMRHYWGLRVRGQHTKTTGRXG 488
RG+RH LRVRGQHTKTTGR G
Sbjct: 121 RGLRHALDLRVRGQHTKTTGRRG 143
>SPCC1795.07 |||mitochondrial ribosomal protein subunit S37
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 151
Score = 39.5 bits (88), Expect = 3e-04
Identities = 17/32 (53%), Positives = 22/32 (68%)
Frame = +3
Query: 387 DLERLKKIRAHRGMRHYWGLRVRGQHTKTTGR 482
D+ RL IR +RGMRH GL V GQ+T+T +
Sbjct: 76 DISRLVNIRCYRGMRHVNGLPVNGQNTRTNAK 107
>SPAC23E2.03c |ste7||meiotic suppressor protein
Ste7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 26.2 bits (55), Expect = 2.7
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -1
Query: 390 NLHGVLNPSWRRSAGCIYHQQYPFAYLGTSXVSY 289
N H ++PS R S+ +Y P Y ++ VSY
Sbjct: 495 NNHCAVSPSRRSSSNALYLATLPMGYERSNSVSY 528
>SPAC227.07c |pab1||protein phosphatase regulatory subunit
Pab1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 463
Score = 26.2 bits (55), Expect = 2.7
Identities = 10/37 (27%), Positives = 20/37 (54%)
Frame = -2
Query: 272 HDSDNFFNLFFCAFASTLVKINVGFFENNVGVPPANT 162
+++D F+ F C F+ + G + NN G+ P ++
Sbjct: 336 YENDCIFDKFECTFSGDDKHVLSGSYSNNFGIYPTDS 372
>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 684
Score = 25.8 bits (54), Expect = 3.5
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = -2
Query: 119 DVRIHDTKNMLKFVWNDQRHFG*VSNQRSQNXKQQGK 9
D + + + +KF WN VSN +S+N + K
Sbjct: 147 DKAVENNSDFIKFDWNSDEDEDSVSNDKSKNNESLKK 183
>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 762
Score = 25.4 bits (53), Expect = 4.6
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +3
Query: 123 GKRKVMFAMTAIKGVGRRYSNIVLKKADIDL 215
GK+KV+ I + R+YSN+ +KA+ L
Sbjct: 10 GKKKVIGNRQCILSLYRKYSNVQSRKAEDQL 40
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 25.0 bits (52), Expect = 6.1
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = -3
Query: 259 IFSTSSSVHSPARLSRSMSAFLRTMLEYLRPTPLIAVIANITFRLPSMF 113
I SSS S A + +S+FL+ +L+ + TP N + + S F
Sbjct: 274 ICCNSSSFWSAADSFKEVSSFLKNLLKNVTATPFEVSDMNWAYIIASFF 322
>SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 127
Score = 25.0 bits (52), Expect = 6.1
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = -3
Query: 289 YCXGFDMIVIIFSTSSSVHSPARLSRSMSAFLRTMLEYLR 170
YC F + + + V+SP ++ M+ F+R +L YL+
Sbjct: 58 YCANFIALFRVIFGTIFVYSPDGITPFMTDFVRWILIYLK 97
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,032,457
Number of Sequences: 5004
Number of extensions: 41287
Number of successful extensions: 116
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -