Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_A15
         (489 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0527 + 3915670-3915821,3916866-3917054,3917477-3917582          225   1e-59
07_01_0525 + 3904388-3904390,3904485-3904645,3905347-3905394,390...   214   3e-56
03_06_0283 - 32832572-32832677,32833343-32833531,32833582-328337...   213   8e-56
07_01_0531 + 3928833-3928867,3930848-3930943,3931873-3931978          102   1e-22
03_05_0839 + 28097780-28097878,28098573-28098782,28099196-28099372     42   2e-04
03_01_0404 + 3138624-3140096                                           31   0.50 
06_03_1275 + 28903961-28904123,28904225-28904322,28904406-289045...    28   4.6  
03_01_0646 + 4742398-4742994,4743681-4744085                           27   6.1  
06_03_0441 - 20820121-20820296,20820554-20820613,20820751-208208...    27   8.1  

>07_01_0527 + 3915670-3915821,3916866-3917054,3917477-3917582
          Length = 148

 Score =  225 bits (550), Expect = 1e-59
 Identities = 95/137 (69%), Positives = 123/137 (89%)
 Frame = +3

Query: 78  DKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEK 257
           + FQHILR++NTN+DGK+K+MFA+T+IKG+GRR+SNI  KKADID++KRAGE T EE+E+
Sbjct: 3   EDFQHILRLLNTNVDGKQKIMFALTSIKGIGRRFSNIACKKADIDMNKRAGELTPEELER 62

Query: 258 IITIMSNPXQYKIPXWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHY 437
           ++T+++NP Q+K+P WFLNR+KD  DG++SQ+ S+ LD KLR+DLERLKKIR HRG+RHY
Sbjct: 63  LMTVVANPRQFKVPDWFLNRKKDYKDGRFSQVVSNALDMKLRDDLERLKKIRNHRGLRHY 122

Query: 438 WGLRVRGQHTKTTGRXG 488
           WGLRVRGQHTKTTGR G
Sbjct: 123 WGLRVRGQHTKTTGRRG 139


>07_01_0525 +
           3904388-3904390,3904485-3904645,3905347-3905394,
           3905714-3905902,3906872-3906977
          Length = 168

 Score =  214 bits (523), Expect = 3e-56
 Identities = 99/159 (62%), Positives = 127/159 (79%), Gaps = 16/159 (10%)
 Frame = +3

Query: 60  MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKR----- 224
           MSL+  + FQHILR++NTN+DGK+K+MFA+T+IKGVGRR+SNI  KKADID++KR     
Sbjct: 1   MSLIAGEDFQHILRLLNTNVDGKQKIMFALTSIKGVGRRFSNIACKKADIDMNKRSGVVC 60

Query: 225 -----------AGECTEEEVEKIITIMSNPXQYKIPXWFLNRQKDIVDGKYSQLTSSNLD 371
                      AGE T EE+E+++T+++NP Q+K+P WFLNR+KD  DG++SQ+ S+ LD
Sbjct: 61  YYLAVHNYVEWAGELTPEELERLMTVVANPRQFKVPDWFLNRKKDYKDGRFSQVVSNALD 120

Query: 372 SKLREDLERLKKIRAHRGMRHYWGLRVRGQHTKTTGRXG 488
            KLR+DLERLKKIR HRG+RHYWGLRVRGQHTKTTGR G
Sbjct: 121 MKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRG 159


>03_06_0283 -
           32832572-32832677,32833343-32833531,32833582-32833796,
           32833900-32833902
          Length = 170

 Score =  213 bits (519), Expect = 8e-56
 Identities = 99/161 (61%), Positives = 127/161 (78%), Gaps = 18/161 (11%)
 Frame = +3

Query: 60  MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKR----- 224
           MSL+  + FQHILR++NTN+DGK+K+MFA+T+IKGVGRR+SNI  KKADID++KR     
Sbjct: 1   MSLIAGEDFQHILRLLNTNVDGKQKIMFALTSIKGVGRRFSNIACKKADIDMNKRQEPPP 60

Query: 225 -------------AGECTEEEVEKIITIMSNPXQYKIPXWFLNRQKDIVDGKYSQLTSSN 365
                        AGE T EE+E+++T+++NP Q+K+P WFLNR+KD  DG++SQ+ S+ 
Sbjct: 61  PPSRRQISVMVGGAGELTPEELERLMTVVANPRQFKVPDWFLNRKKDYKDGRFSQVVSNA 120

Query: 366 LDSKLREDLERLKKIRAHRGMRHYWGLRVRGQHTKTTGRXG 488
           LD KLR+DLERLKKIR HRG+RHYWGLRVRGQHTKTTGR G
Sbjct: 121 LDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRG 161


>07_01_0531 + 3928833-3928867,3930848-3930943,3931873-3931978
          Length = 78

 Score =  102 bits (245), Expect = 1e-22
 Identities = 46/63 (73%), Positives = 53/63 (84%), Gaps = 1/63 (1%)
 Frame = +3

Query: 303 WFL-NRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQHTKTTG 479
           W L  R+KD  DG++SQ+ S+ LD KLR+DLERLKKIR HRG+RHYWGLRVRGQHTKTTG
Sbjct: 7   WILPERKKDYKDGRFSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTG 66

Query: 480 RXG 488
           R G
Sbjct: 67  RRG 69


>03_05_0839 + 28097780-28097878,28098573-28098782,28099196-28099372
          Length = 161

 Score = 42.3 bits (95), Expect = 2e-04
 Identities = 20/34 (58%), Positives = 24/34 (70%)
 Frame = +3

Query: 381 REDLERLKKIRAHRGMRHYWGLRVRGQHTKTTGR 482
           R  +ERLK+IR +RG+RH  GL VRGQ TK   R
Sbjct: 108 RVAIERLKEIRCYRGIRHKLGLPVRGQRTKNNCR 141


>03_01_0404 + 3138624-3140096
          Length = 490

 Score = 31.1 bits (67), Expect = 0.50
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = +3

Query: 333 DGKYSQLTSSNLDSKLREDLERLKKIRAHRGMR 431
           +G Y QL++  LDS  ++D  R++K+   RG+R
Sbjct: 403 EGVYVQLSNIYLDSNRKDDARRVRKLIGSRGIR 435


>06_03_1275 +
           28903961-28904123,28904225-28904322,28904406-28904550,
           28904690-28904814,28904957-28905049,28905297-28905362,
           28905459-28905524,28905790-28905870,28905947-28906123,
           28906212-28906287,28906394-28906521,28906639-28906950
          Length = 509

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = -3

Query: 205 SAFLRTMLEYLRPTPLIAVIANIT 134
           S+FL TM EY+R  P  A +AN T
Sbjct: 255 SSFLGTMEEYIREAPRTAPVANKT 278


>03_01_0646 + 4742398-4742994,4743681-4744085
          Length = 333

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 143 CDDGYQRCWPEVLQHCSQKSR 205
           CDD Y+R W  +L+   ++SR
Sbjct: 296 CDDSYRRAWSRLLRRLVRESR 316


>06_03_0441 -
           20820121-20820296,20820554-20820613,20820751-20820859,
           20820938-20821041,20821387-20822101,20822580-20822719,
           20823342-20823672
          Length = 544

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 10/59 (16%), Positives = 28/59 (47%)
 Frame = +3

Query: 183 NIVLKKADIDLDKRAGECTEEEVEKIITIMSNPXQYKIPXWFLNRQKDIVDGKYSQLTS 359
           N  +++  +  + ++     ++ EKI    +      +P W L  +K+ ++G+  + T+
Sbjct: 144 NRAIERYRLQTNNKSAAVANKDAEKISESSNWDNSVHLPVWVLETEKNAIEGRIEEWTT 202


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,288,104
Number of Sequences: 37544
Number of extensions: 262339
Number of successful extensions: 708
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)