Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_A15
(489 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_6482| Best HMM Match : No HMM Matches (HMM E-Value=.) 257 3e-69
SB_49538| Best HMM Match : No HMM Matches (HMM E-Value=.) 66 1e-11
SB_59196| Best HMM Match : DUF593 (HMM E-Value=1.7) 28 3.6
SB_30426| Best HMM Match : CXC (HMM E-Value=2.8) 28 3.6
SB_48733| Best HMM Match : RVT_1 (HMM E-Value=5.2e-05) 28 4.7
SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.7
SB_13550| Best HMM Match : rve (HMM E-Value=3.4e-08) 28 4.7
SB_6924| Best HMM Match : TTL (HMM E-Value=4.4e-09) 28 4.7
SB_3963| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.7
SB_37962| Best HMM Match : Tcp10_C (HMM E-Value=5.9e-36) 27 6.3
SB_3781| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.3
SB_49127| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.3
SB_28852| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.3
SB_26932| Best HMM Match : rve (HMM E-Value=3.2) 27 8.3
SB_30283| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.3
>SB_6482| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 153
Score = 257 bits (630), Expect = 3e-69
Identities = 114/143 (79%), Positives = 133/143 (93%)
Frame = +3
Query: 60 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 239
MSLVIP+KFQHILR++NTNIDGK+K+MFAMT+IKGVGRRY+NIV KKADID++KRAGE T
Sbjct: 1 MSLVIPEKFQHILRVLNTNIDGKQKIMFAMTSIKGVGRRYANIVCKKADIDMNKRAGELT 60
Query: 240 EEEVEKIITIMSNPXQYKIPXWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAH 419
E+EVE+++TIM NP QYKIP WFLNRQKD DGKYSQ+ ++ LD+K+REDLERLKKIRAH
Sbjct: 61 EDEVERVVTIMQNPRQYKIPDWFLNRQKDHKDGKYSQILANGLDNKMREDLERLKKIRAH 120
Query: 420 RGMRHYWGLRVRGQHTKTTGRXG 488
RG+RHYWGLRVRGQHTKTTGR G
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRKG 143
>SB_49538| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 34
Score = 66.1 bits (154), Expect = 1e-11
Identities = 28/34 (82%), Positives = 34/34 (100%)
Frame = +3
Query: 60 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIK 161
MSLVIP+KFQHILR++NTNIDGK+K+MFAMT+IK
Sbjct: 1 MSLVIPEKFQHILRVLNTNIDGKQKIMFAMTSIK 34
>SB_59196| Best HMM Match : DUF593 (HMM E-Value=1.7)
Length = 1376
Score = 28.3 bits (60), Expect = 3.6
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = +3
Query: 252 EKIITIMSNPXQYKIPXWFLNRQKDIVDGKYSQLTSSN--LDSKLREDLER 398
++I T M + K+ + ++K+ ++GKY QL S L+S +D R
Sbjct: 1207 DQICTHMHEVEELKLKIARIEKEKEYLEGKYDQLNSDKPVLESSRVDDFSR 1257
>SB_30426| Best HMM Match : CXC (HMM E-Value=2.8)
Length = 410
Score = 28.3 bits (60), Expect = 3.6
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Frame = -2
Query: 233 FASTLVKINVGFFENNVGVPPANTFDSRHRKHNLSFAIDVRIHDTKNMLKFVW----NDQ 66
+ +T+ + + E VG+ N F +R+R H SF + ++ + K++W ND
Sbjct: 313 YQATVTRKDKNTSETYVGLTE-NAFKTRYRNHTASFR-HAKHRNSTELSKYIWSLKDNDI 370
Query: 65 RHF 57
HF
Sbjct: 371 EHF 373
>SB_48733| Best HMM Match : RVT_1 (HMM E-Value=5.2e-05)
Length = 1104
Score = 27.9 bits (59), Expect = 4.7
Identities = 10/37 (27%), Positives = 23/37 (62%)
Frame = -3
Query: 250 TSSSVHSPARLSRSMSAFLRTMLEYLRPTPLIAVIAN 140
T +++HS + ++++ F+ + +E RPT L ++ N
Sbjct: 826 TDTALHSKGKDNKTLDLFVSSRVEKYRPTKLHEIVGN 862
>SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6863
Score = 27.9 bits (59), Expect = 4.7
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +3
Query: 291 KIPXWFLNRQKDIVDGKYSQLTSSNLD-SKLREDLERLKKIRAHRGMR 431
K+ W L+ V+ KY + S + + + LRE+LE +KK+R G++
Sbjct: 2757 KLHQWLLD-----VENKYKEKASDSANVAVLREELEDIKKLRQDMGIQ 2799
>SB_13550| Best HMM Match : rve (HMM E-Value=3.4e-08)
Length = 241
Score = 27.9 bits (59), Expect = 4.7
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +3
Query: 372 SKLREDLERLKKIRAHRGMRHYWGLRVRGQHTK 470
S L DL +KI + G RH W L V+ +K
Sbjct: 116 SHLEMDLIDFRKIPCNCGRRHLWALHVKDHFSK 148
>SB_6924| Best HMM Match : TTL (HMM E-Value=4.4e-09)
Length = 458
Score = 27.9 bits (59), Expect = 4.7
Identities = 17/61 (27%), Positives = 30/61 (49%)
Frame = +3
Query: 81 KFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKI 260
+F+H ++ + KRK + + +NI K DIDL G CTE+E+ ++
Sbjct: 59 EFRHEVQASTRKVSSKRKPIRKRRTVT------ANISATKYDIDL---LGYCTEQEIRRV 109
Query: 261 I 263
+
Sbjct: 110 V 110
>SB_3963| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 90
Score = 27.9 bits (59), Expect = 4.7
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = -2
Query: 134 LSFAIDVRIHDTKNMLKFVWNDQRHFG*VSNQRSQNXKQQGK 9
LS A D+R D +NM K++ D RH V + +N QG+
Sbjct: 16 LSLA-DMRDSDWRNMAKYIGCDIRHSDSVQPVKQKNAYSQGE 56
>SB_37962| Best HMM Match : Tcp10_C (HMM E-Value=5.9e-36)
Length = 1290
Score = 27.5 bits (58), Expect = 6.3
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +3
Query: 309 LNRQKDIVDGKYSQLTSSNLDSKLREDLERLK 404
L R+K + + KY + +N D K RE++E LK
Sbjct: 873 LRREKKVFE-KYQKAARANPDKKEREEIESLK 903
>SB_3781| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 499
Score = 27.5 bits (58), Expect = 6.3
Identities = 13/23 (56%), Positives = 18/23 (78%), Gaps = 2/23 (8%)
Frame = +3
Query: 348 QLTSS--NLDSKLREDLERLKKI 410
QLTS N+D K+RE LE++KK+
Sbjct: 72 QLTSEEDNVDPKIREGLEKIKKL 94
>SB_49127| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 458
Score = 27.1 bits (57), Expect = 8.3
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +3
Query: 372 SKLREDLERLKKIRAHRGMRHYWGLRVRGQHTK 470
S L DL +KI + G RH W L V +K
Sbjct: 164 SHLEMDLIDFRKIPCNCGRRHLWALHVEDHFSK 196
>SB_28852| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3172
Score = 27.1 bits (57), Expect = 8.3
Identities = 19/64 (29%), Positives = 31/64 (48%)
Frame = +3
Query: 228 GECTEEEVEKIITIMSNPXQYKIPXWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKK 407
GEC ++V + +P K P LN KD +GK T+ + ++L D ++ K
Sbjct: 645 GECVTQKV----CVHLDPRS-KHPDPSLNVNKDSEEGKTQAQTTDEIIAQLISDHKKKKN 699
Query: 408 IRAH 419
R+H
Sbjct: 700 ARSH 703
>SB_26932| Best HMM Match : rve (HMM E-Value=3.2)
Length = 241
Score = 27.1 bits (57), Expect = 8.3
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +3
Query: 372 SKLREDLERLKKIRAHRGMRHYWGLRVRGQHTK 470
S L DL +KI + G RH W L V +K
Sbjct: 135 SHLEMDLIDFRKIPCNCGRRHLWALHVEDHFSK 167
>SB_30283| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1417
Score = 27.1 bits (57), Expect = 8.3
Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +3
Query: 264 TIMSNPXQYKIPXWFLNR-QKDIVDGKYSQLTSSNLDSKLREDLERLK 404
TI + Y P + + Q++ V+G YS+ S N ++++R++L+ K
Sbjct: 815 TIPRDDNDYAFPLPTIEKSQREPVEGVYSEPYSDNRNAQIRQNLQSRK 862
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,119,791
Number of Sequences: 59808
Number of extensions: 300261
Number of successful extensions: 907
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 907
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1038380485
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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