Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_A15
         (489 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L22959-1|AAA28870.1|  152|Drosophila melanogaster ribosomal prot...   274   6e-74
BT024929-1|ABE01159.1|  152|Drosophila melanogaster IP16603p pro...   274   6e-74
AE013599-2985|AAM68401.1|  152|Drosophila melanogaster CG8900-PB...   274   6e-74
AE013599-2984|AAF57491.1|  152|Drosophila melanogaster CG8900-PA...   274   6e-74
AY118434-1|AAM48463.1|  152|Drosophila melanogaster RH43343p pro...   270   5e-73
BT022499-1|AAY54915.1|  246|Drosophila melanogaster IP07925p pro...    93   2e-19
BT016037-1|AAV36922.1|  447|Drosophila melanogaster LP23579p pro...    28   6.0  
AE014298-2418|AAF48619.1|  454|Drosophila melanogaster CG9903-PA...    28   6.0  
AY069030-1|AAL39175.1|  433|Drosophila melanogaster GH01429p pro...    28   7.9  
AE014297-2410|AAF55469.1|  433|Drosophila melanogaster CG7379-PA...    28   7.9  

>L22959-1|AAA28870.1|  152|Drosophila melanogaster ribosomal protein
           S18 protein.
          Length = 152

 Score =  274 bits (671), Expect = 6e-74
 Identities = 125/143 (87%), Positives = 136/143 (95%)
 Frame = +3

Query: 60  MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 239
           MSLVIP+KFQHILRIMNTNIDGKRKV  AMTAIKGVGRRYSNIVLKKAD+DL KRAGECT
Sbjct: 1   MSLVIPEKFQHILRIMNTNIDGKRKVGIAMTAIKGVGRRYSNIVLKKADVDLTKRAGECT 60

Query: 240 EEEVEKIITIMSNPXQYKIPXWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAH 419
           EEEV+K++TI+SNP QYK+P WFLNRQKDI+DGKY QLTSSNLDSKLR+DLERLKKIR+H
Sbjct: 61  EEEVDKVVTIISNPLQYKVPNWFLNRQKDIIDGKYWQLTSSNLDSKLRDDLERLKKIRSH 120

Query: 420 RGMRHYWGLRVRGQHTKTTGRXG 488
           RG+RHYWGLRVRGQHTKTTGR G
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRG 143


>BT024929-1|ABE01159.1|  152|Drosophila melanogaster IP16603p
           protein.
          Length = 152

 Score =  274 bits (671), Expect = 6e-74
 Identities = 125/143 (87%), Positives = 136/143 (95%)
 Frame = +3

Query: 60  MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 239
           MSLVIP+KFQHILRIMNTNIDGKRKV  AMTAIKGVGRRYSNIVLKKAD+DL KRAGECT
Sbjct: 1   MSLVIPEKFQHILRIMNTNIDGKRKVGIAMTAIKGVGRRYSNIVLKKADVDLTKRAGECT 60

Query: 240 EEEVEKIITIMSNPXQYKIPXWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAH 419
           EEEV+K++TI+SNP QYK+P WFLNRQKDI+DGKY QLTSSNLDSKLR+DLERLKKIR+H
Sbjct: 61  EEEVDKVVTIISNPLQYKVPNWFLNRQKDIIDGKYWQLTSSNLDSKLRDDLERLKKIRSH 120

Query: 420 RGMRHYWGLRVRGQHTKTTGRXG 488
           RG+RHYWGLRVRGQHTKTTGR G
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRG 143


>AE013599-2985|AAM68401.1|  152|Drosophila melanogaster CG8900-PB,
           isoform B protein.
          Length = 152

 Score =  274 bits (671), Expect = 6e-74
 Identities = 125/143 (87%), Positives = 136/143 (95%)
 Frame = +3

Query: 60  MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 239
           MSLVIP+KFQHILRIMNTNIDGKRKV  AMTAIKGVGRRYSNIVLKKAD+DL KRAGECT
Sbjct: 1   MSLVIPEKFQHILRIMNTNIDGKRKVGIAMTAIKGVGRRYSNIVLKKADVDLTKRAGECT 60

Query: 240 EEEVEKIITIMSNPXQYKIPXWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAH 419
           EEEV+K++TI+SNP QYK+P WFLNRQKDI+DGKY QLTSSNLDSKLR+DLERLKKIR+H
Sbjct: 61  EEEVDKVVTIISNPLQYKVPNWFLNRQKDIIDGKYWQLTSSNLDSKLRDDLERLKKIRSH 120

Query: 420 RGMRHYWGLRVRGQHTKTTGRXG 488
           RG+RHYWGLRVRGQHTKTTGR G
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRG 143


>AE013599-2984|AAF57491.1|  152|Drosophila melanogaster CG8900-PA,
           isoform A protein.
          Length = 152

 Score =  274 bits (671), Expect = 6e-74
 Identities = 125/143 (87%), Positives = 136/143 (95%)
 Frame = +3

Query: 60  MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 239
           MSLVIP+KFQHILRIMNTNIDGKRKV  AMTAIKGVGRRYSNIVLKKAD+DL KRAGECT
Sbjct: 1   MSLVIPEKFQHILRIMNTNIDGKRKVGIAMTAIKGVGRRYSNIVLKKADVDLTKRAGECT 60

Query: 240 EEEVEKIITIMSNPXQYKIPXWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAH 419
           EEEV+K++TI+SNP QYK+P WFLNRQKDI+DGKY QLTSSNLDSKLR+DLERLKKIR+H
Sbjct: 61  EEEVDKVVTIISNPLQYKVPNWFLNRQKDIIDGKYWQLTSSNLDSKLRDDLERLKKIRSH 120

Query: 420 RGMRHYWGLRVRGQHTKTTGRXG 488
           RG+RHYWGLRVRGQHTKTTGR G
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRG 143


>AY118434-1|AAM48463.1|  152|Drosophila melanogaster RH43343p
           protein.
          Length = 152

 Score =  270 bits (663), Expect = 5e-73
 Identities = 124/143 (86%), Positives = 135/143 (94%)
 Frame = +3

Query: 60  MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 239
           MSLVIP+KFQ ILRIMNTNIDGKRKV  AMTAIKGVGRRYSNIVLKKAD+DL KRAGECT
Sbjct: 1   MSLVIPEKFQRILRIMNTNIDGKRKVGIAMTAIKGVGRRYSNIVLKKADVDLTKRAGECT 60

Query: 240 EEEVEKIITIMSNPXQYKIPXWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAH 419
           EEEV+K++TI+SNP QYK+P WFLNRQKDI+DGKY QLTSSNLDSKLR+DLERLKKIR+H
Sbjct: 61  EEEVDKVVTIISNPLQYKVPNWFLNRQKDIIDGKYWQLTSSNLDSKLRDDLERLKKIRSH 120

Query: 420 RGMRHYWGLRVRGQHTKTTGRXG 488
           RG+RHYWGLRVRGQHTKTTGR G
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRG 143


>BT022499-1|AAY54915.1|  246|Drosophila melanogaster IP07925p
           protein.
          Length = 246

 Score = 92.7 bits (220), Expect = 2e-19
 Identities = 40/48 (83%), Positives = 46/48 (95%)
 Frame = +3

Query: 156 IKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKIITIMSNPXQYKIP 299
           IKGVGRRYSNIVLKKAD+DL KRAGECTEEEV+K++TI+SNP QYK+P
Sbjct: 1   IKGVGRRYSNIVLKKADVDLTKRAGECTEEEVDKVVTIISNPLQYKVP 48


>BT016037-1|AAV36922.1|  447|Drosophila melanogaster LP23579p
           protein.
          Length = 447

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -2

Query: 350 LAVFTINNILLPI*EPVWYLILXRIRHDSD 261
           +A  TIN++L     P+W L+L RI ++ D
Sbjct: 237 VATTTINSLLALALLPIWILVLGRILYEDD 266


>AE014298-2418|AAF48619.1|  454|Drosophila melanogaster CG9903-PA
           protein.
          Length = 454

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -2

Query: 350 LAVFTINNILLPI*EPVWYLILXRIRHDSD 261
           +A  TIN++L     P+W L+L RI ++ D
Sbjct: 244 VATTTINSLLALALLPIWILVLGRILYEDD 273


>AY069030-1|AAL39175.1|  433|Drosophila melanogaster GH01429p
           protein.
          Length = 433

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +3

Query: 309 LNRQKDIVDGKYSQLTSSNLDSKLREDLER 398
           +N  ++I+DGK  QL +   +  L+ED +R
Sbjct: 97  VNHMQEIIDGKLRQLDTDQQNLDLKEDRDR 126


>AE014297-2410|AAF55469.1|  433|Drosophila melanogaster CG7379-PA
           protein.
          Length = 433

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +3

Query: 309 LNRQKDIVDGKYSQLTSSNLDSKLREDLER 398
           +N  ++I+DGK  QL +   +  L+ED +R
Sbjct: 97  VNHMQEIIDGKLRQLDTDQQNLDLKEDRDR 126


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,002,896
Number of Sequences: 53049
Number of extensions: 454926
Number of successful extensions: 1386
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1355
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1386
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1726192251
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)