Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_A15
         (489 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g09800.1 68417.m01609 40S ribosomal protein S18 (RPS18C)           230   3e-61
At1g34030.1 68414.m04219 40S ribosomal protein S18 (RPS18B) simi...   230   3e-61
At1g22780.1 68414.m02846 40S ribosomal protein S18 (RPS18A) Matc...   230   3e-61
At5g14320.1 68418.m01674 30S ribosomal protein S13, chloroplast ...    37   0.006
At1g77750.1 68414.m09052 30S ribosomal protein S13, chloroplast,...    36   0.019
At1g61710.1 68414.m06960 DC1 domain-containing protein contains ...    29   1.7  
At4g10960.1 68417.m01781 UDP-glucose 4-epimerase, putative / UDP...    28   2.9  
At2g10836.1 68415.m01153 hypothetical protein                          28   3.9  
At1g33610.1 68414.m04160 leucine-rich repeat family protein cont...    27   6.8  

>At4g09800.1 68417.m01609 40S ribosomal protein S18 (RPS18C)
          Length = 152

 Score =  230 bits (563), Expect = 3e-61
 Identities = 100/143 (69%), Positives = 126/143 (88%)
 Frame = +3

Query: 60  MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 239
           MSLV  ++FQHILR++NTN+DGK+K+MFA+T+IKG+GRR +NIV KKAD+D++KRAGE +
Sbjct: 1   MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELS 60

Query: 240 EEEVEKIITIMSNPXQYKIPXWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAH 419
             E++ ++TI++NP Q+KIP WFLNRQKD  DGKYSQ+ S+ LD KLR+DLERLKKIR H
Sbjct: 61  AAEIDNLMTIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120

Query: 420 RGMRHYWGLRVRGQHTKTTGRXG 488
           RG+RHYWGLRVRGQHTKTTGR G
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRG 143


>At1g34030.1 68414.m04219 40S ribosomal protein S18 (RPS18B) similar
           to ribosomal protein S18 GI:38422 from [Homo sapiens]
          Length = 152

 Score =  230 bits (563), Expect = 3e-61
 Identities = 100/143 (69%), Positives = 126/143 (88%)
 Frame = +3

Query: 60  MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 239
           MSLV  ++FQHILR++NTN+DGK+K+MFA+T+IKG+GRR +NIV KKAD+D++KRAGE +
Sbjct: 1   MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELS 60

Query: 240 EEEVEKIITIMSNPXQYKIPXWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAH 419
             E++ ++TI++NP Q+KIP WFLNRQKD  DGKYSQ+ S+ LD KLR+DLERLKKIR H
Sbjct: 61  AAEIDNLMTIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120

Query: 420 RGMRHYWGLRVRGQHTKTTGRXG 488
           RG+RHYWGLRVRGQHTKTTGR G
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRG 143


>At1g22780.1 68414.m02846 40S ribosomal protein S18 (RPS18A) Match
           to ribosomal S18 gene mRNA gb|Z28701, DNA gb|Z23165 from
           A. thaliana. ESTs gb|T21121, gb|Z17755, gb|R64776 and
           gb|R30430 come from this gene
          Length = 152

 Score =  230 bits (563), Expect = 3e-61
 Identities = 100/143 (69%), Positives = 126/143 (88%)
 Frame = +3

Query: 60  MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 239
           MSLV  ++FQHILR++NTN+DGK+K+MFA+T+IKG+GRR +NIV KKAD+D++KRAGE +
Sbjct: 1   MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELS 60

Query: 240 EEEVEKIITIMSNPXQYKIPXWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAH 419
             E++ ++TI++NP Q+KIP WFLNRQKD  DGKYSQ+ S+ LD KLR+DLERLKKIR H
Sbjct: 61  AAEIDNLMTIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120

Query: 420 RGMRHYWGLRVRGQHTKTTGRXG 488
           RG+RHYWGLRVRGQHTKTTGR G
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRG 143


>At5g14320.1 68418.m01674 30S ribosomal protein S13, chloroplast
           (CS13) ribosomal protein S13 precursor, chloroplast
           Arabidopsis thaliana, PIR:S59594; identical to cDNA
           ribosomal protein S13 GI:1515106
          Length = 169

 Score = 37.1 bits (82), Expect = 0.006
 Identities = 16/31 (51%), Positives = 22/31 (70%)
 Frame = +3

Query: 390 LERLKKIRAHRGMRHYWGLRVRGQHTKTTGR 482
           ++RLK+I+ +RG+RH  GL  RGQ TK   R
Sbjct: 122 IKRLKEIQCYRGVRHIQGLPCRGQRTKNNCR 152


>At1g77750.1 68414.m09052 30S ribosomal protein S13, chloroplast,
           putative similar to putative 30S ribosomal protein S13,
           chloroplast precursor GB:P42732 [Arabidopsis thaliana]
          Length = 154

 Score = 35.5 bits (78), Expect = 0.019
 Identities = 37/155 (23%), Positives = 71/155 (45%)
 Frame = +3

Query: 18  LFVVLGTLVRNLTKMSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLK 197
           LF +  +L+RN+T   L +       +R+ N  +   + +   +  + G+GRR S+ VL 
Sbjct: 11  LFDISQSLLRNVTFHGLRVQG-----IRVGNAEVPNNKPLKTGLQEVYGIGRRKSHQVLC 65

Query: 198 KADIDLDKRAGECTEEEVEKIITIMSNPXQYKIPXWFLNRQKDIVDGKYSQLTSSNLDSK 377
              I  +K A + T +E+                   ++ ++++  G++       L  +
Sbjct: 66  HLGIT-NKLARDLTGKEL-------------------IDLREEV--GQHQH--GDELRRR 101

Query: 378 LREDLERLKKIRAHRGMRHYWGLRVRGQHTKTTGR 482
           +  +++RL ++  +RG RH  GL  RGQ T T  R
Sbjct: 102 VGSEIQRLVEVDCYRGSRHRHGLPCRGQRTSTNAR 136


>At1g61710.1 68414.m06960 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 402

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = -2

Query: 257 FFNLFFCAFASTLVKINVGFFENNVGVPPANT 162
           FFNLFF A     +KI +G F  ++ +PP+++
Sbjct: 34  FFNLFFYAQVHENLKIELGIFSRSI-LPPSSS 64


>At4g10960.1 68417.m01781 UDP-glucose 4-epimerase, putative /
           UDP-galactose 4-epimerase, putative / Galactowaldenase,
           putative similar to UDP-galactose 4-epimerase from
           Arabidopsis thaliana SP|Q42605, Cyamopsis tetragonoloba
           GI:3021357 [AJ005082]
          Length = 351

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 336 GKYSQLTSSNLDSKLREDLERLKKIRAHRGMR 431
           G YS +   NLD+     L+R+KK+ A  G R
Sbjct: 26  GGYSVVVVDNLDNSSAVSLQRVKKLAAEHGER 57


>At2g10836.1 68415.m01153 hypothetical protein
          Length = 282

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = -2

Query: 98 KNMLKFVWNDQRHFG*VSNQRSQNXKQQ 15
          +N LKF  N ++H+   S+QR+ N K++
Sbjct: 11 QNSLKFASNHKKHYNLPSSQRTHNLKKR 38


>At1g33610.1 68414.m04160 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611
          Length = 907

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
 Frame = +3

Query: 21  FVVLGTLVRNLTKMSLVIPDKFQHILRIMNTNID-----GKRKVMFAMTAIKGVGRRYSN 185
           F  L TLV +  K S V+P  F +++ I N ++      G   V+ ++  I+ +   Y+ 
Sbjct: 699 FEALSTLVLSKNKYSGVVPMSFTNLINITNLDLSHNLLTGPFPVLKSINGIESLDLSYNK 758

Query: 186 IVLK 197
             LK
Sbjct: 759 FHLK 762


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,578,156
Number of Sequences: 28952
Number of extensions: 210363
Number of successful extensions: 588
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 588
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 848837888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)