Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_A14
(445 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_42588| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.19
SB_5740| Best HMM Match : CDC14 (HMM E-Value=1.1) 29 1.3
SB_54833| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.0
SB_11560| Best HMM Match : Peptidase_M1 (HMM E-Value=0) 28 3.0
SB_44780| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-34) 28 4.0
SB_40653| Best HMM Match : ABC_tran (HMM E-Value=0) 28 4.0
SB_20837| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.3
SB_37811| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.3
SB_24224| Best HMM Match : Lectin_C (HMM E-Value=0) 27 9.2
SB_7905| Best HMM Match : CH (HMM E-Value=1.3e-10) 27 9.2
SB_5386| Best HMM Match : GRP (HMM E-Value=0.012) 27 9.2
>SB_42588| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 53
Score = 32.3 bits (70), Expect = 0.19
Identities = 14/26 (53%), Positives = 19/26 (73%)
Frame = +2
Query: 281 GEEFEEDRADGAKVKSVCTFEGNTLK 358
G+E E+D DG+K S CTFEG T++
Sbjct: 25 GDEHEKDLRDGSKRISGCTFEGITMQ 50
>SB_5740| Best HMM Match : CDC14 (HMM E-Value=1.1)
Length = 1156
Score = 29.5 bits (63), Expect = 1.3
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
Frame = +2
Query: 158 GLITRKAANAVTPTVELRKDGDEYNLVTS---STFKTTEMKFKPGEEFEEDRADGAKVKS 328
GL+ A+ V+ T+ R+ GD + +S S + TE +E DG
Sbjct: 322 GLVKGSASRRVSNTLHTRRQGDARDPTSSWPPSWIRVTE---------DEGAEDGGHELR 372
Query: 329 VCTFEGNTLKQVQKAPDGLEV 391
VC FEG + ++ P +EV
Sbjct: 373 VCVFEGFSRQKQHLKPTAMEV 393
>SB_54833| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 125
Score = 28.3 bits (60), Expect = 3.0
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +3
Query: 174 KPPTLSPRPWSSVRMVTNTI 233
KP L P PW VR+ TN I
Sbjct: 56 KPNPLGPEPWYKVRLPTNVI 75
>SB_11560| Best HMM Match : Peptidase_M1 (HMM E-Value=0)
Length = 854
Score = 28.3 bits (60), Expect = 3.0
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +3
Query: 174 KPPTLSPRPWSSVRMVTNTI 233
KP L P PW VR+ TN I
Sbjct: 81 KPNPLGPEPWYKVRLPTNVI 100
>SB_44780| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-34)
Length = 747
Score = 27.9 bits (59), Expect = 4.0
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = -2
Query: 156 TPMVFMNSSKFSEEVILYFLPTNSIFID*LYRFKRKVFNASVF 28
TP++ + +SK ++++F P NS+ LY F K F +F
Sbjct: 527 TPLIDVTASK---TLLVFFFPINSLCNPFLYAFFTKAFKRELF 566
>SB_40653| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 672
Score = 27.9 bits (59), Expect = 4.0
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +2
Query: 194 PTVELRKDGDEYNLVTSSTFKTTEMKFKPGEEFEEDRADGAKVK 325
P +L ++GDE + T KTTE K G+ +R+ VK
Sbjct: 46 PDSQLEEEGDESEDTSKLTGKTTEEKQNSGKLITTERSKTGHVK 89
>SB_20837| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1304
Score = 27.5 bits (58), Expect = 5.3
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = -2
Query: 234 KLYSSPSLRSSTVGVTALAALRVIRPTPMV 145
+L+ SP+LRS +G+ +AL+ + P MV
Sbjct: 13 RLFHSPNLRSDAIGIFR-SALKAVTPQEMV 41
>SB_37811| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 738
Score = 27.5 bits (58), Expect = 5.3
Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Frame = -2
Query: 273 NFISVVLKVEEVTKLYSSPSLRSSTVGVTALAAL-RVIRPTPMVFMNSSKFSEEVILYFL 97
NF+ V E + P + + G T+ ++ R +PTP+ + E + YF+
Sbjct: 387 NFVQHVGLPERQLAIRVCPRMGKAHNGETSYGSIKRRAQPTPLNVQRTQGGHEGIAFYFI 446
Query: 96 PTNSIFID 73
+ S+FI+
Sbjct: 447 FSGSVFIN 454
>SB_24224| Best HMM Match : Lectin_C (HMM E-Value=0)
Length = 2726
Score = 26.6 bits (56), Expect = 9.2
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +3
Query: 327 PYAHSKATPSSKSRRPPTVLKSLTSGNSAL 416
PY+ + TPSS R+PP L +S N+++
Sbjct: 745 PYSENSPTPSSSERQPP--LSPSSSDNTSV 772
>SB_7905| Best HMM Match : CH (HMM E-Value=1.3e-10)
Length = 172
Score = 26.6 bits (56), Expect = 9.2
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +2
Query: 77 IKMEFVGKKYKMTSSENFDEFMKTIGVGLITRKAANAVTP 196
++M GK + D+F T+ G++ K ANA+ P
Sbjct: 70 VRMWIEGKTSCNFGGDTADDFQNTLKSGVVLCKLANAIQP 109
>SB_5386| Best HMM Match : GRP (HMM E-Value=0.012)
Length = 800
Score = 26.6 bits (56), Expect = 9.2
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = -1
Query: 202 HGRGDSVGGFAGDQTHADG 146
HG GD GG GD H DG
Sbjct: 390 HGGGDHGGGDYGDGDHGDG 408
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,521,049
Number of Sequences: 59808
Number of extensions: 242784
Number of successful extensions: 734
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 871599479
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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