Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_A14
         (445 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g38720.1 68418.m04683 expressed protein predicted protein, Dr...    28   2.5  
At5g24880.1 68418.m02946 expressed protein ; expression supporte...    28   3.3  
At1g69850.1 68414.m08039 nitrate transporter (NTL1) identical to...    27   4.3  
At1g27040.2 68414.m03296 nitrate transporter, putative contains ...    27   4.3  
At1g27040.1 68414.m03297 nitrate transporter, putative contains ...    27   4.3  
At4g03480.1 68417.m00475 ankyrin repeat family protein contains ...    27   5.7  
At3g19890.1 68416.m02518 F-box family protein contains F-box dom...    27   5.7  
At2g17550.1 68415.m02031 expressed protein                             27   5.7  
At5g09620.1 68418.m01113 octicosapeptide/Phox/Bem1p (PB1) domain...    27   7.5  
At5g64830.1 68418.m08156 programmed cell death 2 C-terminal doma...    26   10.0 
At3g06210.1 68416.m00714 expressed protein contains Prosite PS00...    26   10.0 

>At5g38720.1 68418.m04683 expressed protein predicted protein,
           Drosophila melanogaster
          Length = 306

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 16/53 (30%), Positives = 23/53 (43%)
 Frame = +2

Query: 155 VGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTEMKFKPGEEFEEDRADG 313
           VG   ++  N     VEL +D     L   S+ K    K + G+E +   ADG
Sbjct: 18  VGKKIQRKKNEKVSNVELSEDPQAAQLQAKSSEKPNRKKIQKGKEIKSSPADG 70


>At5g24880.1 68418.m02946 expressed protein ; expression supported
           by MPSS
          Length = 443

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 18/49 (36%), Positives = 24/49 (48%)
 Frame = +1

Query: 22  GAKNRRIKNLSLKSIKLIYKNGIRRQEIQDDFLREL**VHEDHRRGSDH 168
           G++N RIK  S K I L   +       Q+D   E+  V  DH + SDH
Sbjct: 173 GSENVRIKKASDKEIAL---DSASMSSAQEDHQEEILKVESDHLQVSDH 218


>At1g69850.1 68414.m08039 nitrate transporter (NTL1) identical to
           nitrate transporter (NTL1) GI:3377517 [Arabidopsis
           thaliana]
          Length = 585

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 107 KMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDG 220
           K T +E     ++ IGVGL+    A AV   VE+++ G
Sbjct: 414 KATKTETGVTHLQRIGVGLVLSILAMAVAALVEIKRKG 451


>At1g27040.2 68414.m03296 nitrate transporter, putative contains
           Pfam profile: PF00854 POT family; similar to nitrate
           transporter (NTL1) GI:3377517 [Arabidopsis thaliana]
          Length = 563

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +2

Query: 107 KMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRK 214
           K+T SE     ++ IGVGL+    A AV   VEL++
Sbjct: 393 KVTKSEIGITHLQRIGVGLVLSIVAMAVAALVELKR 428


>At1g27040.1 68414.m03297 nitrate transporter, putative contains
           Pfam profile: PF00854 POT family; similar to nitrate
           transporter (NTL1) GI:3377517 [Arabidopsis thaliana]
          Length = 567

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +2

Query: 107 KMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRK 214
           K+T SE     ++ IGVGL+    A AV   VEL++
Sbjct: 397 KVTKSEIGITHLQRIGVGLVLSIVAMAVAALVELKR 432


>At4g03480.1 68417.m00475 ankyrin repeat family protein contains
           ankyrin repeats, Pfam domain PF00023
          Length = 617

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 325 IRMHIRRQHPQASPEGPRRS*SHLRQGIRPL 417
           +R H+ R  P+ASP  P  S S+ R  + P+
Sbjct: 2   VRSHLLRATPEASPLKPASSPSNCRLSLSPV 32


>At3g19890.1 68416.m02518 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 410

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +2

Query: 200 VELRKDGDEYNLVTSSTFKTTEMKFKPGEEFEEDRADGAKV 322
           VE+RKD     LV SS++  +  K    EE EED+    K+
Sbjct: 354 VEVRKDVYRSALVCSSSYVPSLEKINQIEEEEEDKCKSIKM 394


>At2g17550.1 68415.m02031 expressed protein
          Length = 765

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 16/85 (18%), Positives = 33/85 (38%)
 Frame = +2

Query: 116 SSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTEMKFKPGEEFE 295
           + + F +  + +  G +  +  N        R  G ++ L +  T  T  +  +PG +  
Sbjct: 178 ADKRFKDCSRIVDSGCVVARDENKERLFTRTRSFGRDFTLKSDRTAPTRIVVLRPGLQRA 237

Query: 296 EDRADGAKVKSVCTFEGNTLKQVQK 370
            D  D     S  T EG+    +++
Sbjct: 238 YDYEDSLTTSSGTTMEGSRGSSIEE 262


>At5g09620.1 68418.m01113 octicosapeptide/Phox/Bem1p (PB1)
           domain-containing protein predicted proteins,
           Arabidopsis thaliana and Drosophila melanogaster
           contains Pfam profile PF00564: PB1 domain
          Length = 531

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 13/52 (25%), Positives = 30/52 (57%)
 Frame = +2

Query: 245 STFKTTEMKFKPGEEFEEDRADGAKVKSVCTFEGNTLKQVQKAPDGLEVTYV 400
           S+ ++ +++F+    +E+ +    KVK +C++ G    ++Q  P   ++TYV
Sbjct: 15  SSPRSRDVEFENPSPWEDQQQQNYKVKLMCSYGG----KIQPRPHDNQLTYV 62


>At5g64830.1 68418.m08156 programmed cell death 2 C-terminal
           domain-containing protein low similarity to SP|P46718
           Programmed cell death protein 2 (Zinc finger protein
           Rp-8) {Mus musculus}; contains Pfam profile PF04194:
           Programmed cell death protein 2, C-terminal domain
          Length = 380

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +2

Query: 20  PALKTDALKTFLLNL*S*SIKMEFVGKKYKMTSSENFDEFMKTI 151
           P +  DALK  LLN  S   K+  V + Y   S+E  D   +T+
Sbjct: 34  PPIPDDALKPELLNCCSCGSKLSLVAQVYAPISTEILDIQERTL 77


>At3g06210.1 68416.m00714 expressed protein contains Prosite
           PS00616: Histidine acid phosphatases phosphohistidine
           signature;
          Length = 840

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +3

Query: 375 PTVLKSLTSGNSALEEMKAVMTA 443
           PTVLKS+TSG++ L E+   + A
Sbjct: 696 PTVLKSITSGDNKLLEVMLGLAA 718


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,798,605
Number of Sequences: 28952
Number of extensions: 171982
Number of successful extensions: 532
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 532
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 712739520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)