Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_A10
(585 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0676 + 4945361-4945531,4945632-4945811,4947145-4947300,494... 57 1e-08
02_05_0964 - 33133516-33133689,33133780-33133857,33133997-331341... 57 1e-08
09_04_0259 - 16182190-16182360,16183185-16183262,16184431-161845... 56 3e-08
07_03_1454 + 26652397-26652501,26653014-26653156,26654013-26654061 56 3e-08
03_03_0057 - 14132854-14133012,14133724-14133837,14134306-14134413 38 0.008
10_08_0968 + 21933627-21933785,21933893-21933943,21934094-219341... 32 0.29
12_01_0618 - 5099021-5099668,5099701-5100221,5100311-5100352,510... 29 2.7
06_01_0666 - 4873797-4874057,4874327-4874455 29 3.6
07_01_0479 + 3606663-3607448 28 6.3
05_04_0335 - 20354678-20354686,20354819-20355662,20355739-20356217 27 8.3
>06_01_0676 +
4945361-4945531,4945632-4945811,4947145-4947300,
4947460-4947537,4964041-4964214
Length = 252
Score = 56.8 bits (131), Expect = 1e-08
Identities = 31/59 (52%), Positives = 37/59 (62%)
Frame = +3
Query: 144 VKRLVPLLDRVLIKRAEAITKTAGGIVIPEKAQSKVLHGEVVAVGPGARKENGDFIPAS 320
VK + PL DRVLIK AEA KTAGG+++ E + K G VVAVGPG + G P S
Sbjct: 156 VKDMKPLNDRVLIKVAEAEDKTAGGLILTETTKEKPSIGTVVAVGPGPLDDEGKRQPLS 214
Score = 51.6 bits (118), Expect = 4e-07
Identities = 27/44 (61%), Positives = 30/44 (68%)
Frame = +3
Query: 153 LVPLLDRVLIKRAEAITKTAGGIVIPEKAQSKVLHGEVVAVGPG 284
L PL DRVL+K A KT GGI++P AQSK GEVVAVG G
Sbjct: 61 LKPLGDRVLVKLGAAEEKTVGGILLPSTAQSKPQGGEVVAVGEG 104
>02_05_0964 -
33133516-33133689,33133780-33133857,33133997-33134152,
33134685-33134864,33135516-33135695
Length = 255
Score = 56.8 bits (131), Expect = 1e-08
Identities = 31/58 (53%), Positives = 36/58 (62%)
Frame = +3
Query: 147 KRLVPLLDRVLIKRAEAITKTAGGIVIPEKAQSKVLHGEVVAVGPGARKENGDFIPAS 320
K + PL DRVLIK AEA KT GG+++ E + K G VVAVGPG E G IP S
Sbjct: 160 KDMKPLSDRVLIKVAEAEDKTPGGLLLTETTKEKPSIGTVVAVGPGPLDEEGKRIPLS 217
Score = 52.0 bits (119), Expect = 3e-07
Identities = 26/44 (59%), Positives = 30/44 (68%)
Frame = +3
Query: 153 LVPLLDRVLIKRAEAITKTAGGIVIPEKAQSKVLHGEVVAVGPG 284
L PL DRVL+K A KT GGI++P AQSK GEVVA+G G
Sbjct: 64 LKPLADRVLVKIKSAEQKTTGGILLPSAAQSKPQGGEVVAIGEG 107
>09_04_0259 -
16182190-16182360,16183185-16183262,16184431-16184586,
16184913-16185092,16185875-16186027
Length = 245
Score = 55.6 bits (128), Expect = 3e-08
Identities = 31/59 (52%), Positives = 37/59 (62%)
Frame = +3
Query: 144 VKRLVPLLDRVLIKRAEAITKTAGGIVIPEKAQSKVLHGEVVAVGPGARKENGDFIPAS 320
VK L PL DRVLIK AEA KTAGG+++ + + K G V AVGPG E+G P S
Sbjct: 150 VKDLKPLNDRVLIKVAEAEEKTAGGLLLTQATKEKPSIGTVTAVGPGPLVEDGSRKPLS 208
Score = 46.8 bits (106), Expect = 1e-05
Identities = 27/54 (50%), Positives = 32/54 (59%)
Frame = +3
Query: 159 PLLDRVLIKRAEAITKTAGGIVIPEKAQSKVLHGEVVAVGPGARKENGDFIPAS 320
PL DRVL+K + KT GGI++P QSK G+VVAVG G R D I S
Sbjct: 57 PLGDRVLVKIKTSDDKTVGGILLPTSVQSKPQGGQVVAVGEG-RSMGSDSIEIS 109
>07_03_1454 + 26652397-26652501,26653014-26653156,26654013-26654061
Length = 98
Score = 55.6 bits (128), Expect = 3e-08
Identities = 26/58 (44%), Positives = 43/58 (74%)
Frame = +3
Query: 147 KRLVPLLDRVLIKRAEAITKTAGGIVIPEKAQSKVLHGEVVAVGPGARKENGDFIPAS 320
+RL+P L+RVL+++ K+AGGI++PE ++ ++ G+VVAVGPG R ++G IP +
Sbjct: 3 RRLIPSLNRVLVEKLVQPKKSAGGILLPETSK-QLNSGKVVAVGPGERDKDGKLIPVA 59
Score = 47.2 bits (107), Expect = 1e-05
Identities = 24/41 (58%), Positives = 28/41 (68%)
Frame = +1
Query: 313 PLQVSVGDKVLLPEYGGTKVSLENDEKEYHLFRESDILAKI 435
P+ + GD VLLPEYGG +V L EKEY LFRE DIL +
Sbjct: 57 PVALKEGDTVLLPEYGGLEVKLA-AEKEYLLFREHDILGTL 96
>03_03_0057 - 14132854-14133012,14133724-14133837,14134306-14134413
Length = 126
Score = 37.5 bits (83), Expect = 0.008
Identities = 18/29 (62%), Positives = 21/29 (72%)
Frame = +1
Query: 313 PLQVSVGDKVLLPEYGGTKVSLENDEKEY 399
P+ + GD VLLPEYGGT+V L EKEY
Sbjct: 96 PVSLKEGDTVLLPEYGGTEVKLA--EKEY 122
Score = 35.5 bits (78), Expect = 0.031
Identities = 14/31 (45%), Positives = 24/31 (77%)
Frame = +3
Query: 141 AVKRLVPLLDRVLIKRAEAITKTAGGIVIPE 233
A +RL+P ++RVL+++ K+AGGI++PE
Sbjct: 2 AARRLIPSMNRVLVEKLLQPNKSAGGILLPE 32
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +3
Query: 261 EVVAVGPGARKENGDFIPAS 320
+VVAVGPG R +G IP S
Sbjct: 79 KVVAVGPGERDRDGKLIPVS 98
>10_08_0968 +
21933627-21933785,21933893-21933943,21934094-21934129,
21935011-21935076,21935163-21935210,21936424-21936453,
21936651-21936719
Length = 152
Score = 32.3 bits (70), Expect = 0.29
Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +1
Query: 319 QVSVGDKVLLPEYGGTKVSLENDEKEYHLF-RESDILAKIE 438
+V G KVL + +V L DEK H F RESD+LA +E
Sbjct: 114 EVEAGKKVLFSDINAYEVDLGTDEK--HCFCRESDLLAVVE 152
>12_01_0618 -
5099021-5099668,5099701-5100221,5100311-5100352,
5100905-5100962
Length = 422
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/19 (63%), Positives = 16/19 (84%)
Frame = +2
Query: 122 KNRNGQCSKTIGSSSGPCP 178
K++N +C KT+ SSSGPCP
Sbjct: 236 KDKN-ECLKTMRSSSGPCP 253
>06_01_0666 - 4873797-4874057,4874327-4874455
Length = 129
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +2
Query: 215 RHCHPREGSIQGFTRRSSSGRSWSPKRKWRLHPRFK 322
RHC + ++ RR S G SW +R W + P F+
Sbjct: 45 RHCRRQRTWVR--RRRRSGGGSWCRRRTWLVMPVFR 78
>07_01_0479 + 3606663-3607448
Length = 261
Score = 27.9 bits (59), Expect = 6.3
Identities = 13/51 (25%), Positives = 25/51 (49%)
Frame = +3
Query: 165 LDRVLIKRAEAITKTAGGIVIPEKAQSKVLHGEVVAVGPGARKENGDFIPA 317
L +L++ E ++ T G P+++++K GPG + G +PA
Sbjct: 69 LGLLLLRGEEVVSMTVEGPPPPDESRAKAAGAGAAMAGPGVGRAAGRGVPA 119
>05_04_0335 - 20354678-20354686,20354819-20355662,20355739-20356217
Length = 443
Score = 27.5 bits (58), Expect = 8.3
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 346 LPEYGGTKVSLENDEKEYHLFRESDILA 429
+P+ LE +EKE+HLF S+ LA
Sbjct: 393 VPDTSSVMHDLEENEKEHHLFLHSERLA 420
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,695,113
Number of Sequences: 37544
Number of extensions: 256655
Number of successful extensions: 672
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 669
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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