Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_A10
         (585 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12997| Best HMM Match : DSL (HMM E-Value=1.4013e-45)                29   2.1  
SB_55936| Best HMM Match : Paramecium_SA (HMM E-Value=0.56)            29   3.7  
SB_26814| Best HMM Match : 7tm_1 (HMM E-Value=0)                       28   4.9  
SB_718| Best HMM Match : RhoGAP (HMM E-Value=0)                        28   4.9  
SB_8842| Best HMM Match : UK (HMM E-Value=2.7)                         28   4.9  
SB_58681| Best HMM Match : MAP65_ASE1 (HMM E-Value=3.3e-26)            28   6.4  
SB_18544| Best HMM Match : 7tm_1 (HMM E-Value=0.00082)                 28   6.4  

>SB_12997| Best HMM Match : DSL (HMM E-Value=1.4013e-45)
          Length = 239

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +2

Query: 197 YNQNCRRHCHPREGSIQGFTRRSSSGR 277
           Y  +CR HC P E  +QG      +GR
Sbjct: 167 YGDDCRIHCVPTESDVQGHYSCDGAGR 193


>SB_55936| Best HMM Match : Paramecium_SA (HMM E-Value=0.56)
          Length = 581

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 289 RAPGPTATTSPCKTLD*AFSGMTMPPA 209
           R P P  + +PCKT+  +FS +   P+
Sbjct: 179 RTPSPLLSATPCKTITQSFSNVAFSPS 205


>SB_26814| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 594

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 10/12 (83%), Positives = 12/12 (100%)
 Frame = -1

Query: 153 IVLLHWPFRFLI 118
           IVLLHWP+RFL+
Sbjct: 177 IVLLHWPWRFLL 188


>SB_718| Best HMM Match : RhoGAP (HMM E-Value=0)
          Length = 598

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 15/55 (27%), Positives = 31/55 (56%)
 Frame = +1

Query: 274 SVLEPEKKMETSSPLQVSVGDKVLLPEYGGTKVSLENDEKEYHLFRESDILAKIE 438
           +VL P  K  TSSP+ ++ G   ++ + G     L+ D +E HL  + +++ +++
Sbjct: 487 NVLRPSPK--TSSPMDLAQGTLDVMSQVGIFMYFLKLDAEELHLPNDPELMRRLD 539


>SB_8842| Best HMM Match : UK (HMM E-Value=2.7)
          Length = 191

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 18/76 (23%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
 Frame = -3

Query: 226 MTMPPAVLVIASALLIRTRSR----RGTNRFTALAISIFN*QNSKAKNMSTMNAVQNLRN 59
           M+ P  +   ASALL+R R +    R T+  +  + S+ N + +    ++     +++ N
Sbjct: 1   MSFPAIITASASALLVRQRYKQLEMRHTSDSSKASESVVNLREASESMVNLREVSESMVN 60

Query: 58  LEYSSQTVLSVAGLSQ 11
           L  +S++V+++   S+
Sbjct: 61  LREASESVVNLREASE 76


>SB_58681| Best HMM Match : MAP65_ASE1 (HMM E-Value=3.3e-26)
          Length = 631

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
 Frame = +3

Query: 120 LKIEMANAVKRLVPLLD--RVLIKRAEAITKTAGGIVIPEKAQSKVLHGEVVAVGPGARK 293
           LK+E    +K L  L D  R L  R    +   G +V+P K Q + L   +  +    +K
Sbjct: 57  LKMEKHERIKVLKVLRDTERQLCDRLRLPSHNIGDVVVPNKEQMRELEANIDYLQKQLQK 116

Query: 294 ENGDFI 311
              +FI
Sbjct: 117 RTDEFI 122


>SB_18544| Best HMM Match : 7tm_1 (HMM E-Value=0.00082)
          Length = 370

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 11/44 (25%), Positives = 21/44 (47%)
 Frame = -1

Query: 480 NRIRITC*SYHHSVFNFRQYVRLSEEMIFFLIIFKAYFSTAVFW 349
           NR  + C  YH ++ N  +Y+ +     + +I+     + AV W
Sbjct: 97  NRAFVVCSLYHVTLLNIDRYIAIKNTFHYPVIVTNQRITIAVVW 140


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,004,672
Number of Sequences: 59808
Number of extensions: 308954
Number of successful extensions: 854
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 849
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1410146228
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)