Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_A10
         (585 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084153-5|AAK84584.1|  108|Caenorhabditis elegans Hypothetical ...    67   1e-11
Z77670-1|CAB01247.1|  484|Caenorhabditis elegans Hypothetical pr...    29   2.4  
U41023-1|AAA82340.1|  569|Caenorhabditis elegans Hypothetical pr...    28   5.6  
U80438-5|AAB37636.1| 1217|Caenorhabditis elegans Nuclear pore co...    27   7.4  
Z92804-2|CAB07253.2|  321|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z69383-4|CAA93411.2|  326|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>AC084153-5|AAK84584.1|  108|Caenorhabditis elegans Hypothetical
           protein Y22D7AL.10 protein.
          Length = 108

 Score = 66.9 bits (156), Expect = 1e-11
 Identities = 30/59 (50%), Positives = 40/59 (67%)
 Frame = +3

Query: 135 ANAVKRLVPLLDRVLIKRAEAITKTAGGIVIPEKAQSKVLHGEVVAVGPGARKENGDFI 311
           +N +K   PL DRVL++R  A TKT GGI++PEK+Q KVL   VV+ G G R E G+ +
Sbjct: 10  SNVLKTFKPLYDRVLVERVAAETKTKGGIMLPEKSQGKVLEATVVSAGAGLRNEKGELV 68



 Score = 52.0 bits (119), Expect = 3e-07
 Identities = 25/37 (67%), Positives = 30/37 (81%)
 Frame = +1

Query: 316 LQVSVGDKVLLPEYGGTKVSLENDEKEYHLFRESDIL 426
           L V  GD+VLLPEYGGTKV +E  +KEY +FRESD+L
Sbjct: 70  LTVKPGDRVLLPEYGGTKVVVE--DKEYSIFRESDLL 104


>Z77670-1|CAB01247.1|  484|Caenorhabditis elegans Hypothetical
           protein W05E10.1 protein.
          Length = 484

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = -1

Query: 438 FNFRQYVRLSEEMIFFLIIFKAYFSTAVFWKK 343
           FN   Y  +S EM+ FLII     ST +FWK+
Sbjct: 434 FNSSGYTWVSVEMLTFLII--GALSTCIFWKQ 463


>U41023-1|AAA82340.1|  569|Caenorhabditis elegans Hypothetical
           protein F53H8.3 protein.
          Length = 569

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = -1

Query: 444 SVFNFRQYVRLSEEMIFFLIIFKAYFSTAVFWKKNFITHTNLK 316
           S F    Y R+S  ++   + F  + +T  FWKKN I HT LK
Sbjct: 248 SFFCVYLYTRIS--LLGLYLNFANHLATTKFWKKNVI-HTALK 287


>U80438-5|AAB37636.1| 1217|Caenorhabditis elegans Nuclear pore
           complex protein protein7 protein.
          Length = 1217

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
 Frame = +3

Query: 183 KRAEAITKTAGGIVIPEK----AQSKVLHGEVVAVGPGARKENGDFIPA 317
           K  + ++    GI  PEK    ++SKV +G      P   K+ GD IP+
Sbjct: 222 KEVQRMSMLRAGIARPEKWGSFSESKVPNGSATGTPPPPLKKAGDAIPS 270


>Z92804-2|CAB07253.2|  321|Caenorhabditis elegans Hypothetical
           protein K05D4.3 protein.
          Length = 321

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
 Frame = -1

Query: 513 QRF-ICARYN*TNRIRITC*SYHHSVFNFRQYVRLSEEMIFFLIIFKAYFSTAVFWKKNF 337
           QRF IC      N ++IT  + +  VF    Y  L E++IFFL+  + + +  VF+  ++
Sbjct: 129 QRFCICFHPRSENYLKITHGTLNWIVFIGYAYFLL-EKVIFFLMCLRDFEAAKVFYMFSY 187

Query: 336 IT 331
           I+
Sbjct: 188 IS 189


>Z69383-4|CAA93411.2|  326|Caenorhabditis elegans Hypothetical
           protein F13E9.9 protein.
          Length = 326

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = +3

Query: 210 AGGIVIPEKAQS--KVLHGEVVAVGPGARKENGD 305
           +G   IPEK     K + G+  ++ PG +K+NGD
Sbjct: 207 SGAASIPEKVVDGVKSIPGKAKSILPGGKKKNGD 240


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,115,541
Number of Sequences: 27780
Number of extensions: 233960
Number of successful extensions: 638
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 637
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)