Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_A10
         (585 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   3.9  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   5.1  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   5.1  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   6.7  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   6.7  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    21   8.9  

>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 10/36 (27%), Positives = 23/36 (63%)
 Frame = -3

Query: 184 LIRTRSRRGTNRFTALAISIFN*QNSKAKNMSTMNA 77
           +IR+RSRR + RF++  +   +  +S++ + S + +
Sbjct: 16  IIRSRSRRYSKRFSSSIVDRRSPSSSRSPSPSLLTS 51


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +1

Query: 514 IWSCIFCEVLIL 549
           IWSC+F  +LIL
Sbjct: 375 IWSCLFFFMLIL 386


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +1

Query: 514 IWSCIFCEVLIL 549
           IWSC+F  +LIL
Sbjct: 428 IWSCLFFFMLIL 439


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 104 F*ILLIKNRNGQCSKTIGSSSGPCP 178
           F  LL K RNG    T+ +++  CP
Sbjct: 289 FDCLLKKERNGPTQTTLNATTLFCP 313


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 104 F*ILLIKNRNGQCSKTIGSSSGPCP 178
           F  LL K RNG    T+ +++  CP
Sbjct: 379 FDCLLKKERNGPTQTTLNATTLFCP 403


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = +2

Query: 266 SSGRSWSPKRKWRLHPRFKLVWVIKFF 346
           S G  +    +W L     LVW++ +F
Sbjct: 163 SEGVEYVGNIRWELAGTLLLVWILCYF 189


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,994
Number of Sequences: 438
Number of extensions: 2842
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16993167
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)