Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_A10
         (585 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g14980.1 68414.m01790 10 kDa chaperonin (CPN10) identical to ...    61   5e-10
At1g23100.1 68414.m02888 10 kDa chaperonin, putative similar to ...    60   8e-10
At5g20720.2 68418.m02461 20 kDa chaperonin, chloroplast (CPN21) ...    57   8e-09
At5g20720.1 68418.m02460 20 kDa chaperonin, chloroplast (CPN21) ...    57   8e-09
At2g44650.1 68415.m05557 chloroplast chaperonin 10 (cpn10) ident...    37   0.009
At3g60210.1 68416.m06728 chloroplast chaperonin 10, putative sim...    36   0.015
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p...    31   0.43 
At3g31430.1 68416.m04015 hypothetical protein low similarity to ...    29   2.3  
At2g31340.1 68415.m03825 expressed protein                             27   7.0  
At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP1...    27   7.0  
At5g53010.1 68418.m06584 calcium-transporting ATPase, putative         27   9.2  

>At1g14980.1 68414.m01790 10 kDa chaperonin (CPN10) identical to
           SP:P34893 from [Arabidopsis thaliana]
          Length = 98

 Score = 61.3 bits (142), Expect = 5e-10
 Identities = 28/59 (47%), Positives = 43/59 (72%)
 Frame = +3

Query: 144 VKRLVPLLDRVLIKRAEAITKTAGGIVIPEKAQSKVLHGEVVAVGPGARKENGDFIPAS 320
           +KRL+P  +R+L++R     KT  GI++PEK+ SK+  G+V+AVGPG+R ++G  IP S
Sbjct: 2   MKRLIPTFNRILVQRVIQPAKTESGILLPEKS-SKLNSGKVIAVGPGSRDKDGKLIPVS 59



 Score = 52.4 bits (120), Expect = 2e-07
 Identities = 24/41 (58%), Positives = 29/41 (70%)
 Frame = +1

Query: 313 PLQVSVGDKVLLPEYGGTKVSLENDEKEYHLFRESDILAKI 435
           P+ V  GD VLLPEYGGT+V L   E EYHLFR+ D+L  +
Sbjct: 57  PVSVKEGDTVLLPEYGGTQVKL--GENEYHLFRDEDVLGTL 95


>At1g23100.1 68414.m02888 10 kDa chaperonin, putative similar to 10
           kDa chaperonin SP:P34893 from [Arabidopsis thaliana]
          Length = 97

 Score = 60.5 bits (140), Expect = 8e-10
 Identities = 29/58 (50%), Positives = 42/58 (72%)
 Frame = +3

Query: 147 KRLVPLLDRVLIKRAEAITKTAGGIVIPEKAQSKVLHGEVVAVGPGARKENGDFIPAS 320
           KRL+P L+RVL+++    +KT  GI++PEK+ S++  G V+AVGPGAR   G+ IP S
Sbjct: 3   KRLIPTLNRVLVEKILPPSKTVSGILLPEKS-SQLNSGRVIAVGPGARDRAGNLIPVS 59



 Score = 47.2 bits (107), Expect = 8e-06
 Identities = 22/41 (53%), Positives = 30/41 (73%)
 Frame = +1

Query: 313 PLQVSVGDKVLLPEYGGTKVSLENDEKEYHLFRESDILAKI 435
           P+ V  GD VLLPE+GGT+V L   EKE+ L+R+ DI+A +
Sbjct: 57  PVSVKEGDNVLLPEFGGTQVKL--GEKEFLLYRDEDIMATL 95


>At5g20720.2 68418.m02461 20 kDa chaperonin, chloroplast (CPN21)
           (CHCPN10) (CPN20) identical to chloroplast 20 kDa
           chaperonin, chloroplast precursor (Protein Cpn21),
           chloroplast protein Cpn10, chloroplast chaperonin 10
           (Ch-CPN10), SP|O65282 from [Arabidopsis thaliana];
           identical to cDNA chaperonin 20 GI:14587372
          Length = 253

 Score = 57.2 bits (132), Expect = 8e-09
 Identities = 29/57 (50%), Positives = 36/57 (63%)
 Frame = +3

Query: 144 VKRLVPLLDRVLIKRAEAITKTAGGIVIPEKAQSKVLHGEVVAVGPGARKENGDFIP 314
           +K L PL DRV IK AEA  KTAGG+++ E  + K   G V+AVGPG+  E G   P
Sbjct: 157 IKDLKPLNDRVFIKVAEAEEKTAGGLLLTETTKEKPSIGTVIAVGPGSLDEEGKITP 213



 Score = 52.0 bits (119), Expect = 3e-07
 Identities = 27/42 (64%), Positives = 30/42 (71%)
 Frame = +3

Query: 159 PLLDRVLIKRAEAITKTAGGIVIPEKAQSKVLHGEVVAVGPG 284
           PL DRVL+K  EA  KT GGI++P  AQSK   GEVVAVG G
Sbjct: 64  PLGDRVLVKIKEAEEKTLGGILLPSTAQSKPQGGEVVAVGEG 105



 Score = 27.9 bits (59), Expect = 5.3
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +1

Query: 310 SPLQVSVGDKVLLPEYGGTKVSLENDEKEYHLFRESDILA 429
           +PL VS G  VL  +Y G       D   Y   R SD++A
Sbjct: 212 TPLPVSTGSTVLYSKYAGNDFK-GKDGSNYIALRASDVMA 250


>At5g20720.1 68418.m02460 20 kDa chaperonin, chloroplast (CPN21)
           (CHCPN10) (CPN20) identical to chloroplast 20 kDa
           chaperonin, chloroplast precursor (Protein Cpn21),
           chloroplast protein Cpn10, chloroplast chaperonin 10
           (Ch-CPN10), SP|O65282 from [Arabidopsis thaliana];
           identical to cDNA chaperonin 20 GI:14587372
          Length = 253

 Score = 57.2 bits (132), Expect = 8e-09
 Identities = 29/57 (50%), Positives = 36/57 (63%)
 Frame = +3

Query: 144 VKRLVPLLDRVLIKRAEAITKTAGGIVIPEKAQSKVLHGEVVAVGPGARKENGDFIP 314
           +K L PL DRV IK AEA  KTAGG+++ E  + K   G V+AVGPG+  E G   P
Sbjct: 157 IKDLKPLNDRVFIKVAEAEEKTAGGLLLTETTKEKPSIGTVIAVGPGSLDEEGKITP 213



 Score = 52.0 bits (119), Expect = 3e-07
 Identities = 27/42 (64%), Positives = 30/42 (71%)
 Frame = +3

Query: 159 PLLDRVLIKRAEAITKTAGGIVIPEKAQSKVLHGEVVAVGPG 284
           PL DRVL+K  EA  KT GGI++P  AQSK   GEVVAVG G
Sbjct: 64  PLGDRVLVKIKEAEEKTLGGILLPSTAQSKPQGGEVVAVGEG 105



 Score = 27.9 bits (59), Expect = 5.3
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +1

Query: 310 SPLQVSVGDKVLLPEYGGTKVSLENDEKEYHLFRESDILA 429
           +PL VS G  VL  +Y G       D   Y   R SD++A
Sbjct: 212 TPLPVSTGSTVLYSKYAGNDFK-GKDGSNYIALRASDVMA 250


>At2g44650.1 68415.m05557 chloroplast chaperonin 10 (cpn10)
           identical to chloroplast chaperonin 10 GI:14041813 from
           [Arabidopsis thaliana]
          Length = 139

 Score = 37.1 bits (82), Expect = 0.009
 Identities = 17/53 (32%), Positives = 34/53 (64%), Gaps = 2/53 (3%)
 Frame = +3

Query: 150 RLVPLLDRVLIKRAEAITKTAGGIVIPEKAQ--SKVLHGEVVAVGPGARKENG 302
           ++VP  DRVL++  +   K++GG+++P+ A    + L GE+++VG    ++ G
Sbjct: 51  KVVPQADRVLVRLEDLPIKSSGGVLLPKAAVKFERYLTGEIISVGSEVGQQVG 103


>At3g60210.1 68416.m06728 chloroplast chaperonin 10, putative
           similar to chloroplast chaperonin 10 GI:14041813 from
           [Arabidopsis thaliana]
          Length = 138

 Score = 36.3 bits (80), Expect = 0.015
 Identities = 18/45 (40%), Positives = 30/45 (66%), Gaps = 2/45 (4%)
 Frame = +3

Query: 150 RLVPLLDRVLIKRAEAITKTAGGIVIPEKAQ--SKVLHGEVVAVG 278
           ++VP  DRVL++      K++GG+++P+ A    + L GEVV+VG
Sbjct: 50  KVVPQADRVLVRLEVLPEKSSGGVLLPKSAVKFERYLTGEVVSVG 94


>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
           protein contains Pfam profile PF01480: PWI domain
          Length = 878

 Score = 31.5 bits (68), Expect = 0.43
 Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
 Frame = +2

Query: 125 NRNGQCSKTIGSSSGPCPDQKS*SYNQNCRRHCHPREGSIQGFTRRSSS---GRSWSPKR 295
           +R+   SKT   S     ++KS S +Q+      PR+  +    RRS S    RS SP+R
Sbjct: 215 SRSRSISKTNSGSKSYSGERKSRSTSQSSDASISPRKRRLSNSRRRSRSRSVRRSLSPRR 274

Query: 296 KWRLHPRFK 322
           + R+H  F+
Sbjct: 275 R-RIHSPFR 282


>At3g31430.1 68416.m04015 hypothetical protein low similarity to
           zinc finger protein [Arabidopsis thaliana] GI:976277
          Length = 336

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -1

Query: 351 WKKNFITHTNLKRG*SLHFLFGLQDRPLLLLRVKPW 244
           W ++ + H  +  G   HF+F L++    +LR  PW
Sbjct: 157 WGQSGLVHGRIMEGRQFHFIFTLEESLETVLRRGPW 192


>At2g31340.1 68415.m03825 expressed protein
          Length = 559

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 17/51 (33%), Positives = 20/51 (39%)
 Frame = -1

Query: 405 EMIFFLIIFKAYFSTAVFWKKNFITHTNLKRG*SLHFLFGLQDRPLLLLRV 253
           E  F L + K        WK N I H N   G S        D PLL+L +
Sbjct: 196 ETAFALRLAKEVIKVHQGWKANAIAHLNRTNGFSRTLANSCTDWPLLMLEL 246


>At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP19)
           non-consensus splice site at the intron:exon boundary
           (AT:exon)
          Length = 247

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -3

Query: 304 SPFSFRAPGPTATTSPCKTLD*AFSGMTMPPAV 206
           +P +  AP PT TT P        S +T PPAV
Sbjct: 45  APPTTAAPPPTTTTPPVSAAQPPASPVTPPPAV 77


>At5g53010.1 68418.m06584 calcium-transporting ATPase, putative 
          Length = 1049

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = +3

Query: 162 LLDRVLIKRAEAITKTAGGIVIPEKAQSKVLHGEVVAVGPGARKENGDFI 311
           LL + L KR   +  T  GI  P+  +   +   +   G  A KEN DFI
Sbjct: 774 LLVQALKKRGHIVAATGMGIHDPKTLREADVSLAMGVGGTAAAKENSDFI 823


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,330,187
Number of Sequences: 28952
Number of extensions: 217929
Number of successful extensions: 551
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1151426952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)