Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_A08
(613 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q5UAT5 Cluster: 60S ribosomal protein L6; n=15; Bilater... 287 1e-76
UniRef50_Q9V9W3 Cluster: 60S ribosomal protein L6; n=6; Metazoa|... 150 2e-35
UniRef50_Q02878 Cluster: 60S ribosomal protein L6; n=71; Euteleo... 123 4e-27
UniRef50_Q6B8B0 Cluster: 60S ribosomal protein L6; n=1; Ixodes p... 118 1e-25
UniRef50_Q5DE99 Cluster: 60S ribosomal protein L6; n=1; Schistos... 112 7e-24
UniRef50_A7S4S4 Cluster: Predicted protein; n=5; Eukaryota|Rep: ... 108 9e-23
UniRef50_A3F4R4 Cluster: 60S ribosomal protein L6; n=1; Taenia a... 103 3e-21
UniRef50_A7L698 Cluster: 60S ribosomal protein L6; n=1; Artemia ... 98 2e-19
UniRef50_Q9C9C6 Cluster: 60S ribosomal protein L6-2; n=11; Eukar... 95 9e-19
UniRef50_P47991 Cluster: 60S ribosomal protein L6; n=2; Caenorha... 90 4e-17
UniRef50_Q54D63 Cluster: 60S ribosomal protein L6; n=2; Eukaryot... 88 2e-16
UniRef50_Q01IK4 Cluster: 60S ribosomal protein L6; n=17; Eukaryo... 85 9e-16
UniRef50_Q5CM54 Cluster: 60S ribosomal protein L6; n=2; Cryptosp... 85 9e-16
UniRef50_Q7XY83 Cluster: 60S ribosomal protein L6; n=1; Griffith... 84 2e-15
UniRef50_Q4N3I8 Cluster: 60S ribosomal protein L6e, putative; n=... 83 5e-15
UniRef50_Q1DRV0 Cluster: 60S ribosomal protein L6; n=15; Pezizom... 83 5e-15
UniRef50_Q02326 Cluster: 60S ribosomal protein L6-A; n=16; Dikar... 77 4e-13
UniRef50_Q7SH22 Cluster: 60S ribosomal protein L6; n=2; Sordaria... 75 2e-12
UniRef50_A0CYT3 Cluster: 60S ribosomal protein L6; n=5; Oligohym... 72 9e-12
UniRef50_UPI0000DA1E66 Cluster: PREDICTED: similar to ribosomal ... 69 7e-11
UniRef50_Q4X638 Cluster: 60S ribosomal subunit protein L6e, puta... 69 7e-11
UniRef50_Q4Q4D3 Cluster: 60S ribosomal protein L6, putative; n=1... 61 2e-08
UniRef50_A5C5P0 Cluster: 60S ribosomal protein L6; n=1; Vitis vi... 58 1e-07
UniRef50_A2EBD1 Cluster: 60S ribosomal protein L6, putative; n=7... 52 8e-06
UniRef50_A0N0S1 Cluster: 60S ribosomal protein L6; n=1; Strongyl... 51 2e-05
UniRef50_Q8SR91 Cluster: 60S RIBOSOMAL PROTEIN L6; n=1; Encephal... 47 3e-04
UniRef50_UPI0000DC20AA Cluster: UPI0000DC20AA related cluster; n... 44 0.003
UniRef50_Q98RL7 Cluster: 60S ribosomal protein L6B; n=1; Guillar... 42 0.015
UniRef50_Q8U2L5 Cluster: 50S ribosomal protein L14e; n=5; Archae... 40 0.047
UniRef50_A7QIH5 Cluster: Chromosome chr12 scaffold_103, whole ge... 39 0.081
UniRef50_Q7QVA1 Cluster: 60S ribosomal protein L27; n=1; Giardia... 38 0.25
UniRef50_Q8ZYB4 Cluster: 50S ribosomal protein L14e; n=14; Archa... 37 0.33
UniRef50_P54054 Cluster: 50S ribosomal protein L14e; n=8; Euryar... 37 0.33
UniRef50_A2RKU3 Cluster: Cation-transporting ATPase; n=2; Lactoc... 36 0.76
UniRef50_Q4ZTN3 Cluster: Sensor protein; n=5; Pseudomonas|Rep: S... 34 3.1
UniRef50_Q5KML3 Cluster: VpsB, putative; n=2; Basidiomycota|Rep:... 33 4.0
UniRef50_A7ET80 Cluster: Putative uncharacterized protein; n=1; ... 33 7.1
UniRef50_Q7NID4 Cluster: Gll2249 protein; n=8; Cyanobacteria|Rep... 32 9.3
UniRef50_Q483P8 Cluster: Putative membrane protein; n=1; Colwell... 32 9.3
>UniRef50_Q5UAT5 Cluster: 60S ribosomal protein L6; n=15;
Bilateria|Rep: 60S ribosomal protein L6 - Bombyx mori
(Silk moth)
Length = 273
Score = 287 bits (704), Expect = 1e-76
Identities = 140/171 (81%), Positives = 140/171 (81%)
Frame = +3
Query: 99 STKKPRNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXXXXXXXXXXXXXXXXX 278
STKKPRNYDLGNGVMRFSKSKMFHKKAKYKFIG
Sbjct: 25 STKKPRNYDLGNGVMRFSKSKMFHKKAKYKFIGKKNPKPEKPKKLTVVVKQIGGEKNGGT 84
Query: 279 XXVPLKRXKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGXRVVLVG 458
VPLKR KSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAG RVVLVG
Sbjct: 85 RTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVG 144
Query: 459 ILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYF 611
ILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYF
Sbjct: 145 ILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYF 195
>UniRef50_Q9V9W3 Cluster: 60S ribosomal protein L6; n=6;
Metazoa|Rep: 60S ribosomal protein L6 - Drosophila
melanogaster (Fruit fly)
Length = 262
Score = 150 bits (364), Expect = 2e-35
Identities = 77/169 (45%), Positives = 100/169 (59%)
Frame = +3
Query: 105 KKPRNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 284
K P N L G++R+SK++M+ ++A Y+
Sbjct: 19 KHPVNSYLKGGILRYSKAQMYKRRALYRLKDKKSPVVEKAKVPIKKVKKIGGPKNGGERT 78
Query: 285 VPLKRXKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGXRVVLVGIL 464
V LK+ K+ YPT+ ++ FS+H R R NL GTV ILLAGRH G RVVL+ +L
Sbjct: 79 VFLKKSKASYPTKTFVKKRPSKANFSEHKRNTRRNLTPGTVLILLAGRHQGKRVVLLKVL 138
Query: 465 PSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYF 611
SGLLLVTGPFA NSCPLRR+ QRYVIGTS+++ LG FK+P+H ND YF
Sbjct: 139 ASGLLLVTGPFALNSCPLRRVSQRYVIGTSSKVDLGAFKVPEHLNDAYF 187
>UniRef50_Q02878 Cluster: 60S ribosomal protein L6; n=71;
Euteleostomi|Rep: 60S ribosomal protein L6 - Homo
sapiens (Human)
Length = 288
Score = 123 bits (296), Expect = 4e-27
Identities = 68/172 (39%), Positives = 92/172 (53%), Gaps = 6/172 (3%)
Frame = +3
Query: 114 RNYDLGNGVMRFSKSKMFHKKA----KYKFIGXXXXXXXXXXXXXXXXXXXXXXXXXXXX 281
RN L G+ R+S+S M+ +KA KY
Sbjct: 46 RNPVLVRGIGRYSRSAMYSRKAMYKRKYSAAKSKVEKKKKEKVLATVTKPVGGDKNGGTR 105
Query: 282 XVPLKRXKSFYPTQEKIRA--SSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGXRVVLV 455
V L++ +YPT++ R S G +PFS+HVR++R ++ GT+ I+L GRH G RVV +
Sbjct: 106 VVKLRKMPRYYPTEDVPRKLLSHGKKPFSQHVRKLRASITPGTILIILTGRHRGKRVVFL 165
Query: 456 GILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYF 611
L SGLLLVTGP N PLRR Q++VI TST+I + N K+PKH D YF
Sbjct: 166 KQLASGLLLVTGPLVLNRVPLRRTHQKFVIATSTKIDISNVKIPKHLTDAYF 217
>UniRef50_Q6B8B0 Cluster: 60S ribosomal protein L6; n=1; Ixodes
pacificus|Rep: 60S ribosomal protein L6 - Ixodes
pacificus (western blacklegged tick)
Length = 268
Score = 118 bits (283), Expect = 1e-25
Identities = 66/169 (39%), Positives = 90/169 (53%), Gaps = 2/169 (1%)
Frame = +3
Query: 111 PRNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVP 290
P+N+ L GV FS+SKMFHK+ +K +P
Sbjct: 25 PKNHKLPGGVWLFSRSKMFHKRGLFKVKHAAPTKEKRKRKKRVTVKRVKGEKNGGKRVLP 84
Query: 291 LKRXKSFYPTQE--KIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGXRVVLVGIL 464
LK+ + YPT++ + + +S +P S+ +R + GTV ILLAG H G RVV + L
Sbjct: 85 LKKERRSYPTEDSPQHKRTSHMKPSSRTRVALRKRITPGTVLILLAGPHRGKRVVFLKQL 144
Query: 465 PSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYF 611
+GLL VTGP+ N CPLRRI Q YVI TST++ L KLP+ +D YF
Sbjct: 145 KTGLLPVTGPYGVNGCPLRRINQIYVIATSTKLDLSKVKLPEGLDDRYF 193
>UniRef50_Q5DE99 Cluster: 60S ribosomal protein L6; n=1; Schistosoma
japonicum|Rep: 60S ribosomal protein L6 - Schistosoma
japonicum (Blood fluke)
Length = 238
Score = 112 bits (269), Expect = 7e-24
Identities = 58/111 (52%), Positives = 73/111 (65%), Gaps = 3/111 (2%)
Frame = +3
Query: 288 PLKRXKSFYPTQE---KIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGXRVVLVG 458
P R Y TQ+ K+R + FS HVR+IR +++ GTV ILLAG H G RV+ +
Sbjct: 55 PKTRFPRSYVTQQGKRKLRLRRA-KCFSNHVRKIRSSIQPGTVLILLAGPHKGKRVIFLK 113
Query: 459 ILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYF 611
L SGLLLVTGPF +N PLRR+ Q YVI TSTRI + F +PKH +D+YF
Sbjct: 114 ALKSGLLLVTGPFKYNGVPLRRVNQCYVIATSTRIDISKFDVPKHIDDEYF 164
>UniRef50_A7S4S4 Cluster: Predicted protein; n=5; Eukaryota|Rep:
Predicted protein - Nematostella vectensis
Length = 244
Score = 108 bits (260), Expect = 9e-23
Identities = 67/168 (39%), Positives = 90/168 (53%), Gaps = 2/168 (1%)
Frame = +3
Query: 114 RNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPL 293
RN +L G+ R+S+S ++ K+A YK VP+
Sbjct: 11 RNPELAPGISRYSRSAIYKKRALYKR-KKTGVKKVVQDEPRTKTKDIGGDKNGGKRVVPV 69
Query: 294 KRXKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGXRVVLVGILPSG 473
+R +YPT++ +R R + ++R ++ GTV ILLAG H G RVV + L SG
Sbjct: 70 QRESRYYPTED-VRRRLANRK-KPGMAKLRSSITPGTVLILLAGAHRGKRVVFLKQLNSG 127
Query: 474 LLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKH-FNDD-YF 611
LLLVTGPF N PLRRIPQ YVI TST I + + KLP+H F D+ YF
Sbjct: 128 LLLVTGPFKINGVPLRRIPQSYVIATSTHIDVSDVKLPEHAFADESYF 175
>UniRef50_A3F4R4 Cluster: 60S ribosomal protein L6; n=1; Taenia
asiatica|Rep: 60S ribosomal protein L6 - Taenia asiatica
(Asian tapeworm)
Length = 212
Score = 103 bits (248), Expect = 3e-21
Identities = 49/85 (57%), Positives = 59/85 (69%)
Frame = +3
Query: 357 FSKHVRRIRPNLKIGTVCILLAGRHAGXRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQR 536
F+ H RRIR ++ G V ILLAGRH RVV + L SGLLLVTGPF +N PLRR+ QR
Sbjct: 86 FADHRRRIRKSITPGKVLILLAGRHRAKRVVFLKSLASGLLLVTGPFKYNGVPLRRVNQR 145
Query: 537 YVIGTSTRISLGNFKLPKHFNDDYF 611
YVI T TRI + N K+P ND++F
Sbjct: 146 YVIATKTRIKIKNIKIPSQLNDEFF 170
>UniRef50_A7L698 Cluster: 60S ribosomal protein L6; n=1; Artemia
franciscana|Rep: 60S ribosomal protein L6 - Artemia
sanfranciscana (Brine shrimp) (Artemia franciscana)
Length = 241
Score = 97.9 bits (233), Expect = 2e-19
Identities = 50/109 (45%), Positives = 68/109 (62%)
Frame = +3
Query: 285 VPLKRXKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGXRVVLVGIL 464
V ++ FYP + + +K+ +IR +L+ GT+ ILLAG + G RVVL+ L
Sbjct: 60 VSTRKPPQFYPINSRQKRFHRRLVNNKNPPKIRKSLQPGTILILLAGVNRGKRVVLLKAL 119
Query: 465 PSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYF 611
SGLLLV+GP N PLRR+ Q+ VI TSTRI + N K+P+H ND YF
Sbjct: 120 KSGLLLVSGPLKVNRVPLRRVHQKLVIATSTRIDISNVKVPEHINDTYF 168
>UniRef50_Q9C9C6 Cluster: 60S ribosomal protein L6-2; n=11;
Eukaryota|Rep: 60S ribosomal protein L6-2 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 233
Score = 95.5 bits (227), Expect = 9e-19
Identities = 61/171 (35%), Positives = 88/171 (51%)
Frame = +3
Query: 99 STKKPRNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXXXXXXXXXXXXXXXXX 278
+ K RN DL GV ++S+S+M+HK+ +
Sbjct: 7 TAKVNRNPDLIRGVGKYSRSQMYHKRGLWAI-------------KAKNGGVFPRHDAKSK 53
Query: 279 XXVPLKRXKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGXRVVLVG 458
P+++ FYP ++ ++ R +K + +R ++ GTV I+LAGR G RVV +
Sbjct: 54 VDAPVEKPPKFYPAED-VKKPLPNRRTAKPAK-LRASITPGTVLIILAGRFKGKRVVFLK 111
Query: 459 ILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYF 611
L SGLLLVTGPF N PLRR+ Q YVIGTST++ + L K F+D YF
Sbjct: 112 QLASGLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDK-FDDKYF 161
>UniRef50_P47991 Cluster: 60S ribosomal protein L6; n=2;
Caenorhabditis|Rep: 60S ribosomal protein L6 -
Caenorhabditis elegans
Length = 217
Score = 89.8 bits (213), Expect = 4e-17
Identities = 44/79 (55%), Positives = 55/79 (69%), Gaps = 1/79 (1%)
Frame = +3
Query: 378 IRPNLKIGTVCILLAGRHAGXRVVLVGILP-SGLLLVTGPFAFNSCPLRRIPQRYVIGTS 554
+R L GTV I+LAGRH G RVV + LP SGLLLVTGP N PLRRI Q +VI TS
Sbjct: 67 LRKTLTPGTVLIVLAGRHKGKRVVFLKQLPQSGLLLVTGPHKINGFPLRRIGQAFVIATS 126
Query: 555 TRISLGNFKLPKHFNDDYF 611
++++ K+P+H ND+YF
Sbjct: 127 LKVNVSGVKIPEHINDEYF 145
>UniRef50_Q54D63 Cluster: 60S ribosomal protein L6; n=2;
Eukaryota|Rep: 60S ribosomal protein L6 - Dictyostelium
discoideum AX4
Length = 236
Score = 87.8 bits (208), Expect = 2e-16
Identities = 43/78 (55%), Positives = 54/78 (69%)
Frame = +3
Query: 378 IRPNLKIGTVCILLAGRHAGXRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTST 557
+R ++ GTV I+LAGR AG RVV + L SGL+L+TGPF N PLRRI QRYVI TST
Sbjct: 87 LRKSITPGTVLIILAGRFAGKRVVALKQLDSGLILITGPFKVNGVPLRRIDQRYVIATST 146
Query: 558 RISLGNFKLPKHFNDDYF 611
+I + + K+ ND YF
Sbjct: 147 KIDVSSVKVAATINDAYF 164
>UniRef50_Q01IK4 Cluster: 60S ribosomal protein L6; n=17;
Eukaryota|Rep: 60S ribosomal protein L6 - Oryza sativa
(Rice)
Length = 222
Score = 85.4 bits (202), Expect = 9e-16
Identities = 48/102 (47%), Positives = 63/102 (61%), Gaps = 1/102 (0%)
Frame = +3
Query: 309 FYPTQE-KIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGXRVVLVGILPSGLLLV 485
FYP + K R S +P + ++R ++ GTV ILLAGR G RVV + L SGLLLV
Sbjct: 53 FYPADDVKPRQPSTRKP---NPTKLRSSITPGTVLILLAGRFMGKRVVFLKQLKSGLLLV 109
Query: 486 TGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYF 611
TGPF N P+RR+ Q YVI TST++ + + K F+D YF
Sbjct: 110 TGPFKINGVPIRRVNQPYVIATSTKVDISGVNVEK-FDDKYF 150
>UniRef50_Q5CM54 Cluster: 60S ribosomal protein L6; n=2;
Cryptosporidium|Rep: 60S ribosomal protein L6 -
Cryptosporidium hominis
Length = 184
Score = 85.4 bits (202), Expect = 9e-16
Identities = 42/93 (45%), Positives = 60/93 (64%)
Frame = +3
Query: 333 RASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGXRVVLVGILPSGLLLVTGPFAFNSC 512
R S R S ++R +L+ G VCILLAG + G RVV++ LPSGL++VTGP+A N
Sbjct: 20 RKYSSRRKASVVAPKLRSSLQPGVVCILLAGPYKGKRVVMLKALPSGLVVVTGPYALNGV 79
Query: 513 PLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYF 611
P+RR+ Y+I TST++ + + K F D+YF
Sbjct: 80 PVRRVNPAYIIATSTKVDVSKADVSK-FTDEYF 111
>UniRef50_Q7XY83 Cluster: 60S ribosomal protein L6; n=1; Griffithsia
japonica|Rep: 60S ribosomal protein L6 - Griffithsia
japonica (Red alga)
Length = 216
Score = 84.2 bits (199), Expect = 2e-15
Identities = 47/109 (43%), Positives = 64/109 (58%)
Frame = +3
Query: 285 VPLKRXKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGXRVVLVGIL 464
VP K+ +YP +K + K + +RP++K GT+ ILLAG G RVV++ L
Sbjct: 38 VPEKKGPKWYPADDKKTPVPSRKNVHKPTK-LRPSIKSGTIVILLAGVFRGSRVVVLKQL 96
Query: 465 PSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYF 611
SG LLVTGP+A N PL R+ QRYVI TST I + + K ++ YF
Sbjct: 97 DSGQLLVTGPYAVNRIPLTRVDQRYVIATSTSIDVSKVDV-KKIDNAYF 144
>UniRef50_Q4N3I8 Cluster: 60S ribosomal protein L6e, putative; n=3;
Piroplasmida|Rep: 60S ribosomal protein L6e, putative -
Theileria parva
Length = 212
Score = 83.0 bits (196), Expect = 5e-15
Identities = 41/72 (56%), Positives = 52/72 (72%)
Frame = +3
Query: 348 GRPFSKHVRRIRPNLKIGTVCILLAGRHAGXRVVLVGILPSGLLLVTGPFAFNSCPLRRI 527
GR ++ V ++R +LK G V ILL G + G RVVL+ +L SGLLLVTGPF+FN PLRR+
Sbjct: 31 GRKYAS-VPKVRESLKPGAVLILLTGSYKGKRVVLLKVLKSGLLLVTGPFSFNGVPLRRV 89
Query: 528 PQRYVIGTSTRI 563
RYVI TST +
Sbjct: 90 NSRYVIATSTNV 101
>UniRef50_Q1DRV0 Cluster: 60S ribosomal protein L6; n=15;
Pezizomycotina|Rep: 60S ribosomal protein L6 -
Coccidioides immitis
Length = 206
Score = 83.0 bits (196), Expect = 5e-15
Identities = 40/94 (42%), Positives = 60/94 (63%)
Frame = +3
Query: 288 PLKRXKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGXRVVLVGILP 467
P ++ + +YP ++ + + + H ++RP+L+ GT+ ILLAGR G RV+L+ L
Sbjct: 26 PSQKAQKWYPADDEPQPKKARK--TAHPTKLRPSLQPGTILILLAGRFRGKRVILLKHLG 83
Query: 468 SGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISL 569
G+LLVTGPF N PLRR+ RYVI TS+ + L
Sbjct: 84 QGVLLVTGPFKLNGVPLRRVNARYVIATSSTVDL 117
>UniRef50_Q02326 Cluster: 60S ribosomal protein L6-A; n=16;
Dikarya|Rep: 60S ribosomal protein L6-A - Saccharomyces
cerevisiae (Baker's yeast)
Length = 176
Score = 76.6 bits (180), Expect = 4e-13
Identities = 43/106 (40%), Positives = 65/106 (61%)
Frame = +3
Query: 294 KRXKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGXRVVLVGILPSG 473
++ +YP+++ + A R ++ +++R +L GTV ILLAGR G RVV + L
Sbjct: 4 QKAPKWYPSED-VAALKKTRKAARP-QKLRASLVPGTVLILLAGRFRGKRVVYLKHLEDN 61
Query: 474 LLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYF 611
LL++GPF N PLRR+ RYVI TST++S+ + K FN +YF
Sbjct: 62 TLLISGPFKVNGVPLRRVNARYVIATSTKVSVEGVNVEK-FNVEYF 106
>UniRef50_Q7SH22 Cluster: 60S ribosomal protein L6; n=2;
Sordariaceae|Rep: 60S ribosomal protein L6 - Neurospora
crassa
Length = 207
Score = 74.5 bits (175), Expect = 2e-12
Identities = 40/75 (53%), Positives = 47/75 (62%), Gaps = 2/75 (2%)
Frame = +3
Query: 351 RPFSKHVRRIRPNLKI--GTVCILLAGRHAGXRVVLVGILPSGLLLVTGPFAFNSCPLRR 524
RP K +R P + GTV ILLAGR G RVVL+ L G+LLVTGPF N PLRR
Sbjct: 24 RPVRKTIRPWSPRSTLVPGTVLILLAGRFRGKRVVLLKALDQGVLLVTGPFKINGVPLRR 83
Query: 525 IPQRYVIGTSTRISL 569
+ RYVI TS ++ L
Sbjct: 84 VNARYVIATSQKVDL 98
>UniRef50_A0CYT3 Cluster: 60S ribosomal protein L6; n=5;
Oligohymenophorea|Rep: 60S ribosomal protein L6 -
Paramecium tetraurelia
Length = 208
Score = 72.1 bits (169), Expect = 9e-12
Identities = 43/94 (45%), Positives = 54/94 (57%)
Frame = +3
Query: 330 IRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGXRVVLVGILPSGLLLVTGPFAFNS 509
+R RP + +R+I P G V ILL+GR G RVV + L SGLLLVTGPF N
Sbjct: 44 VRKRKAPRPAT--LRKIVP----GQVLILLSGRFQGKRVVFLKQLKSGLLLVTGPFKING 97
Query: 510 CPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYF 611
PL+R+ YVI TST++ + NDDYF
Sbjct: 98 VPLKRVNSAYVIPTSTKVDVTGVN-ANQINDDYF 130
>UniRef50_UPI0000DA1E66 Cluster: PREDICTED: similar to ribosomal
protein L6; n=5; Eutheria|Rep: PREDICTED: similar to
ribosomal protein L6 - Rattus norvegicus
Length = 112
Score = 69.3 bits (162), Expect = 7e-11
Identities = 36/70 (51%), Positives = 42/70 (60%)
Frame = +3
Query: 402 TVCILLAGRHAGXRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFK 581
TV I+L GRH G RVV + L SGLLLVTGP A N PL R+ Q VI T T++ + K
Sbjct: 13 TVLIILTGRHRGKRVVFLKQLGSGLLLVTGPLALNRVPLCRMHQSVVISTFTKVDICKVK 72
Query: 582 LPKHFNDDYF 611
KH D F
Sbjct: 73 TSKHLTDASF 82
>UniRef50_Q4X638 Cluster: 60S ribosomal subunit protein L6e,
putative; n=5; Plasmodium|Rep: 60S ribosomal subunit
protein L6e, putative - Plasmodium chabaudi
Length = 241
Score = 69.3 bits (162), Expect = 7e-11
Identities = 29/64 (45%), Positives = 44/64 (68%)
Frame = +3
Query: 372 RRIRPNLKIGTVCILLAGRHAGXRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGT 551
R++R ++++G V I+L G+H G R ++ +L SGLL V GP+ N PL+R+ RY+I T
Sbjct: 68 RKMRSSIQVGKVAIILTGKHMGKRCIIAKVLKSGLLAVVGPYEVNGVPLKRVDPRYLIVT 127
Query: 552 STRI 563
ST I
Sbjct: 128 STNI 131
>UniRef50_Q4Q4D3 Cluster: 60S ribosomal protein L6, putative; n=11;
Trypanosomatidae|Rep: 60S ribosomal protein L6, putative
- Leishmania major
Length = 195
Score = 60.9 bits (141), Expect = 2e-08
Identities = 29/67 (43%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Frame = +3
Query: 378 IRPNLKIGTVCILLAGRHAGXRVVLVGILP-SGLLLVTGPFAFNSCPLRRIPQRYVIGTS 554
+R + G + I+LAGR G R V++ LP +G L+V+GP +N P+RRI RYVI TS
Sbjct: 29 LRKSCAPGAIAIILAGRFRGRRAVILKQLPHNGPLVVSGPMKYNGVPIRRIDSRYVIATS 88
Query: 555 TRISLGN 575
T + + +
Sbjct: 89 TTVDISS 95
>UniRef50_A5C5P0 Cluster: 60S ribosomal protein L6; n=1; Vitis
vinifera|Rep: 60S ribosomal protein L6 - Vitis vinifera
(Grape)
Length = 249
Score = 58.4 bits (135), Expect = 1e-07
Identities = 29/57 (50%), Positives = 37/57 (64%)
Frame = +3
Query: 441 RVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYF 611
RVV + L SGLLL+TG F N PLRR+ Q YVI TST++ + + K F+D YF
Sbjct: 157 RVVFLKQLSSGLLLITGSFKINGVPLRRVNQAYVIATSTKVDIPKVNVEK-FDDKYF 212
>UniRef50_A2EBD1 Cluster: 60S ribosomal protein L6, putative; n=7;
Trichomonas vaginalis G3|Rep: 60S ribosomal protein L6,
putative - Trichomonas vaginalis G3
Length = 151
Score = 52.4 bits (120), Expect = 8e-06
Identities = 26/63 (41%), Positives = 38/63 (60%)
Frame = +3
Query: 381 RPNLKIGTVCILLAGRHAGXRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTR 560
RP+LK+GTV I++ G H G R V+V +G++ + GP P+ I Q Y+I TST
Sbjct: 53 RPSLKVGTVVIVVGGEHQGKRAVVVADQGAGIVKIAGPVV----PVNEISQDYLIATSTS 108
Query: 561 ISL 569
I +
Sbjct: 109 IEV 111
>UniRef50_A0N0S1 Cluster: 60S ribosomal protein L6; n=1;
Strongyloides papillosus|Rep: 60S ribosomal protein L6 -
Strongyloides papillosus
Length = 127
Score = 51.2 bits (117), Expect = 2e-05
Identities = 21/46 (45%), Positives = 29/46 (63%)
Frame = +3
Query: 474 LLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYF 611
L GPF+ N P+RRI Q++V+ TST+I + K+P DDYF
Sbjct: 10 LFTFLGPFSINGVPVRRIAQKFVLPTSTKIDVSGVKIPATMTDDYF 55
>UniRef50_Q8SR91 Cluster: 60S RIBOSOMAL PROTEIN L6; n=1;
Encephalitozoon cuniculi|Rep: 60S RIBOSOMAL PROTEIN L6 -
Encephalitozoon cuniculi
Length = 155
Score = 47.2 bits (107), Expect = 3e-04
Identities = 31/82 (37%), Positives = 44/82 (53%)
Frame = +3
Query: 324 EKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGXRVVLVGILPSGLLLVTGPFAF 503
EK +A + +P VRR +L G V ++L G A RVV + L + L GP +
Sbjct: 10 EKYKARTARKP---RVRRT--DLVKGMVVVVLEGVFASRRVVYLKGLEDNIALCAGPKSI 64
Query: 504 NSCPLRRIPQRYVIGTSTRISL 569
N PL RI +RY++ TST + L
Sbjct: 65 NGIPLFRIDERYLLATSTVLDL 86
>UniRef50_UPI0000DC20AA Cluster: UPI0000DC20AA related cluster; n=2;
Rattus norvegicus|Rep: UPI0000DC20AA UniRef100 entry -
Rattus norvegicus
Length = 261
Score = 44.0 bits (99), Expect = 0.003
Identities = 29/71 (40%), Positives = 39/71 (54%)
Frame = +3
Query: 354 PFSKHVRRIRPNLKIGTVCILLAGRHAGXRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQ 533
P KH + + N TV I++ G+H RVV + L G LL+TGP A N L R Q
Sbjct: 123 PAFKHEKAVC-NSTPETVLIIITGQHR--RVVFLKQLSRGFLLITGPLALNLVLLYRTHQ 179
Query: 534 RYVIGTSTRIS 566
+ V+ TST I+
Sbjct: 180 KSVVITSTTIN 190
>UniRef50_Q98RL7 Cluster: 60S ribosomal protein L6B; n=1; Guillardia
theta|Rep: 60S ribosomal protein L6B - Guillardia theta
(Cryptomonas phi)
Length = 169
Score = 41.5 bits (93), Expect = 0.015
Identities = 24/74 (32%), Positives = 37/74 (50%)
Frame = +3
Query: 387 NLKIGTVCILLAGRHAGXRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRIS 566
+ KIG + I+ + G + V +G G LL++G FN +I +YV+ + +
Sbjct: 41 DFKIGDILIIKKRNNYGKKCVFLGHTDDGNLLLSGIMKFNGIGYLKIHWKYVVKSGVSLK 100
Query: 567 LGNFKLPKHFNDDY 608
NF L KH N DY
Sbjct: 101 GLNF-LTKHTNKDY 113
>UniRef50_Q8U2L5 Cluster: 50S ribosomal protein L14e; n=5;
Archaea|Rep: 50S ribosomal protein L14e - Pyrococcus
furiosus
Length = 83
Score = 39.9 bits (89), Expect = 0.047
Identities = 18/53 (33%), Positives = 32/53 (60%)
Frame = +3
Query: 384 PNLKIGTVCILLAGRHAGXRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYV 542
P + +G + +++AGR AG +VV+V I+ +LVTG N RR+ +++
Sbjct: 2 PAIDVGRIAVVIAGRRAGQKVVVVDIIDKNFVLVTGA-GLNKVKRRRMNIKHI 53
>UniRef50_A7QIH5 Cluster: Chromosome chr12 scaffold_103, whole
genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr12 scaffold_103, whole genome shotgun
sequence - Vitis vinifera (Grape)
Length = 345
Score = 39.1 bits (87), Expect = 0.081
Identities = 26/69 (37%), Positives = 39/69 (56%)
Frame = +3
Query: 309 FYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGXRVVLVGILPSGLLLVT 488
FYP + ++ + +K ++ +R ++ GTV I+LAGR VV + L SGLLL+T
Sbjct: 207 FYPADD-VKKPLINKHKAKPIK-LRASITPGTVLIILAGR-----VVFLKQLSSGLLLIT 259
Query: 489 GPFAFNSCP 515
G F N P
Sbjct: 260 GSFKINDVP 268
>UniRef50_Q7QVA1 Cluster: 60S ribosomal protein L27; n=1; Giardia
lamblia ATCC 50803|Rep: 60S ribosomal protein L27 -
Giardia lamblia ATCC 50803
Length = 135
Score = 37.5 bits (83), Expect = 0.25
Identities = 16/29 (55%), Positives = 21/29 (72%)
Frame = +3
Query: 381 RPNLKIGTVCILLAGRHAGXRVVLVGILP 467
+P +K G VCI+L GRHAG + V+V LP
Sbjct: 3 QPIIKPGLVCIVLQGRHAGKKAVIVEALP 31
>UniRef50_Q8ZYB4 Cluster: 50S ribosomal protein L14e; n=14;
Archaea|Rep: 50S ribosomal protein L14e - Pyrobaculum
aerophilum
Length = 103
Score = 37.1 bits (82), Expect = 0.33
Identities = 17/60 (28%), Positives = 31/60 (51%)
Frame = +3
Query: 390 LKIGTVCILLAGRHAGXRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISL 569
+ IG V + + GR AG + V+V I+ +++TGP RR+ ++ T +I +
Sbjct: 5 IDIGRVVVKVLGREAGRKAVVVDIVDENYVVITGPKPITGVKRRRVNINHIEPTDKKIDI 64
>UniRef50_P54054 Cluster: 50S ribosomal protein L14e; n=8;
Euryarchaeota|Rep: 50S ribosomal protein L14e -
Methanococcus jannaschii
Length = 80
Score = 37.1 bits (82), Expect = 0.33
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +3
Query: 384 PNLKIGTVCILLAGRHAGXRVVLVGILPSGLLLVTGPFAFNSCPLRRI 527
P +++G VCI AGR AG V+V IL ++V G C ++ +
Sbjct: 2 PAIEVGRVCIKTAGREAGKVCVIVDILDKNFVIVDGLVKRRRCNIKHL 49
>UniRef50_A2RKU3 Cluster: Cation-transporting ATPase; n=2;
Lactococcus lactis subsp. cremoris|Rep:
Cation-transporting ATPase - Lactococcus lactis subsp.
cremoris (strain MG1363)
Length = 841
Score = 35.9 bits (79), Expect = 0.76
Identities = 16/44 (36%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
Frame = +3
Query: 441 RVVLVGILPSGLLLVTGPFAFNSCPLRRIPQR--YVIGTSTRIS 566
+++++GI+P +L++ F F+S L IPQR +IGT+ I+
Sbjct: 215 KIIVIGIIPISILVLLNQFVFSSLDLSVIPQRKTAIIGTAATIT 258
>UniRef50_Q4ZTN3 Cluster: Sensor protein; n=5; Pseudomonas|Rep:
Sensor protein - Pseudomonas syringae pv. syringae
(strain B728a)
Length = 676
Score = 33.9 bits (74), Expect = 3.1
Identities = 19/53 (35%), Positives = 31/53 (58%)
Frame = +3
Query: 348 GRPFSKHVRRIRPNLKIGTVCILLAGRHAGXRVVLVGILPSGLLLVTGPFAFN 506
GR ++ R++RP LK+ + + G +A V G L +G+ L+T PFAF+
Sbjct: 617 GRQLAEIARQLRPELKV----LFITG-YAEHAAVRGGFLDTGMQLITKPFAFD 664
>UniRef50_Q5KML3 Cluster: VpsB, putative; n=2; Basidiomycota|Rep:
VpsB, putative - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 686
Score = 33.5 bits (73), Expect = 4.0
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = -1
Query: 463 RIPTSTTLLPACLPARRMQTVPIFRLGRILRTCLLNGRPPDEARI 329
R+P+ L A L A R Q P ++ +++ T + NG PP+ AR+
Sbjct: 397 RVPSPNKLRLAILYALRYQKSPSAQIPQVVSTLISNGVPPERARL 441
>UniRef50_A7ET80 Cluster: Putative uncharacterized protein; n=1;
Sclerotinia sclerotiorum 1980|Rep: Putative
uncharacterized protein - Sclerotinia sclerotiorum 1980
Length = 752
Score = 32.7 bits (71), Expect = 7.1
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = +3
Query: 291 LKRXKSFYPTQEKIRASSGGRPFSKHVRRIRPNLK 395
LK SF P + + ASS GRP K +R+R LK
Sbjct: 137 LKAMVSFMPHRPAVDASSSGRPMKKDSKRMRNGLK 171
>UniRef50_Q7NID4 Cluster: Gll2249 protein; n=8; Cyanobacteria|Rep:
Gll2249 protein - Gloeobacter violaceus
Length = 544
Score = 32.3 bits (70), Expect = 9.3
Identities = 20/54 (37%), Positives = 28/54 (51%)
Frame = +3
Query: 444 VVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDD 605
+V G + GL+L F S PL Q + +G +T +G LP+HFNDD
Sbjct: 43 IVTCGQVLKGLIL--NGLGFVSAPLYLFEQ-FFVGKATEHLIGPGVLPEHFNDD 93
>UniRef50_Q483P8 Cluster: Putative membrane protein; n=1; Colwellia
psychrerythraea 34H|Rep: Putative membrane protein -
Colwellia psychrerythraea (strain 34H / ATCC BAA-681)
(Vibriopsychroerythus)
Length = 249
Score = 32.3 bits (70), Expect = 9.3
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = -1
Query: 490 PVTKSRPLGRIPTSTTLLPA-CLP-ARRMQTVPIFRLGRILRTCLL 359
P TK G IP + T P+ C P A R+ V ++ +GRI CL+
Sbjct: 41 PTTKESLQGDIPVNVTSAPSGCSPQASRLNLVFLYHVGRIASYCLI 86
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 574,889,911
Number of Sequences: 1657284
Number of extensions: 10455449
Number of successful extensions: 26052
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 25115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25981
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 43977329078
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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