Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_A08
         (613 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13636| Best HMM Match : Ribosomal_L6e (HMM E-Value=0)               50   1e-06
SB_48087| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_29467| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.2  
SB_25219| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  

>SB_13636| Best HMM Match : Ribosomal_L6e (HMM E-Value=0)
          Length = 112

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 25/42 (59%), Positives = 29/42 (69%), Gaps = 2/42 (4%)
 Frame = +3

Query: 492 PFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKH-FNDD-YF 611
           PF  N  PLRRIPQ YVI TST I + + KLP+H F D+ YF
Sbjct: 2   PFKINGVPLRRIPQSYVIATSTHIDVSDVKLPEHAFADESYF 43


>SB_48087| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1396

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
 Frame = +2

Query: 275 NQNSTPQ---TXEVLLPHSGENPCFIWWPSIQQACTQDPTQP 391
           NQ++ PQ   T  VL+PH G  PC   +P+         TQP
Sbjct: 94  NQSTLPQGNATQWVLIPHKGSMPCIGTFPNAINTWIIPGTQP 135


>SB_29467| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 151

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
 Frame = +2

Query: 383 TQPEDRNCLHSPRW*TCRQXGCTCWN-SAQRSAFSYWTFCFQFVPATPYS 529
           TQ   R   HSPR   CR   CT +N    +   S+ T C +  P   +S
Sbjct: 84  TQEAYRKNSHSPRKRQCRNRLCTSYNWIRNKETSSFVTLCHREKPVGHFS 133


>SB_25219| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 118

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +1

Query: 265 RMGEPEQYPSNVXSPSTPLRRKSVLHLVAVHS 360
           R  EP ++P +  +P  PL+ +  L L + H+
Sbjct: 52  RHAEPSEFPQDTQNPQIPLQTRRTLRLPSRHA 83


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,994,962
Number of Sequences: 59808
Number of extensions: 343237
Number of successful extensions: 971
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 945
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1499981500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)