Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_A08
         (613 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) simila...    95   3e-20
At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) simila...    95   4e-20
At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) simila...    91   7e-19
At1g20540.1 68414.m02559 transducin family protein / WD-40 repea...    30   1.1  
At5g08320.1 68418.m00979 expressed protein predicted proteins, H...    28   5.6  

>At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) similar
           to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
           from [Cyanophora paradoxa]
          Length = 233

 Score = 95.1 bits (226), Expect = 3e-20
 Identities = 61/171 (35%), Positives = 88/171 (51%)
 Frame = +3

Query: 99  STKKPRNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXXXXXXXXXXXXXXXXX 278
           + K  RN DL  GV ++S+S+M+HK+  +                               
Sbjct: 7   TAKVNRNPDLIRGVGKYSRSQMYHKRGLWAI-------------KAKNGGVFPRHDAKSK 53

Query: 279 XXVPLKRXKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGXRVVLVG 458
              P+++   FYP ++ ++     R  +K  + +R ++  GTV I+LAGR  G RVV + 
Sbjct: 54  VDAPVEKPPKFYPAED-VKKPLPNRRTAKPAK-LRASITPGTVLIILAGRFKGKRVVFLK 111

Query: 459 ILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYF 611
            L SGLLLVTGPF  N  PLRR+ Q YVIGTST++ +    L K F+D YF
Sbjct: 112 QLASGLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDK-FDDKYF 161


>At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) similar
           to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
           from [Cyanophora paradoxa]
          Length = 233

 Score = 94.7 bits (225), Expect = 4e-20
 Identities = 61/169 (36%), Positives = 87/169 (51%)
 Frame = +3

Query: 105 KKPRNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 284
           K  RN DL  GV ++S+S+M+HK+  +                                 
Sbjct: 9   KVNRNPDLIRGVGKYSRSQMYHKRGLWAI-------------KAKNGGVFPRHDAKSKVD 55

Query: 285 VPLKRXKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGXRVVLVGIL 464
            P+++   FYP ++ ++     R  +K  + +R ++  GTV I+LAGR  G RVV +  L
Sbjct: 56  APVEKPPKFYPAED-VKKPLPNRRTAKPTK-LRASITPGTVLIILAGRFKGKRVVFLKQL 113

Query: 465 PSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYF 611
            SGLLLVTGPF  N  PLRR+ Q YVIGTST++ +    L K F+D YF
Sbjct: 114 ASGLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDK-FDDKYF 161


>At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) similar
           to 60S ribosomal protein L6 GI:7208784 from [Cicer
           arietinum]
          Length = 233

 Score = 90.6 bits (215), Expect = 7e-19
 Identities = 60/169 (35%), Positives = 85/169 (50%)
 Frame = +3

Query: 105 KKPRNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 284
           K  RN DL  GV ++S+S+M+HK+  +                                 
Sbjct: 9   KVNRNPDLIRGVGKYSRSQMYHKRGLWAI-------------KAKNGGVFPRHDAQPKVD 55

Query: 285 VPLKRXKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGXRVVLVGIL 464
            P+++   FYP ++ ++     R   K  + ++ ++  GTV I+LAGR  G RVV +  L
Sbjct: 56  APVEKPAKFYPAED-VKKPLVNRRKPKPTK-LKASITPGTVLIILAGRFKGKRVVFLKQL 113

Query: 465 PSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYF 611
            SGLLLVTGPF  N  PLRR+ Q YVIGTST+I +      K F+D YF
Sbjct: 114 SSGLLLVTGPFKINGVPLRRVNQAYVIGTSTKIDISGVNTEK-FDDKYF 161


>At1g20540.1 68414.m02559 transducin family protein / WD-40 repeat
           family protein contains 6 WD-40 repeats (PF00400);
           similar to Rbap46 polypeptide (GI:9454362) [Gallus
           gallus]
          Length = 351

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = +2

Query: 248 AXWR*XEWGNQNSTPQTXEV--LLPHSGENPCFIWWPS 355
           A W+  E   Q ++PQ   V  L  H G+  C +WWPS
Sbjct: 94  AIWQIPELYGQLNSPQLERVASLDAHVGKINCVLWWPS 131


>At5g08320.1 68418.m00979 expressed protein predicted proteins, Homo
           sapiens and Caenorhabditis elegans
          Length = 150

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -3

Query: 551 GADHIALRNTA*RARIESKRSSN*KQTAGQNSNKYNPXACMSTSEE 414
           G D +  +NT      + +R S  ++T  ++S K NP  C + S E
Sbjct: 85  GTDTVLQQNTMPLKVGKRRRDSEMQETGSEDSEKVNPVFCSACSTE 130


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,542,895
Number of Sequences: 28952
Number of extensions: 233163
Number of successful extensions: 534
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 534
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1226538000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)