Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_A06
(619 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0177 + 20669053-20669055,20669150-20669198,20669680-206699... 145 3e-35
04_03_0970 + 21338072-21338074,21338192-21338240,21338688-213389... 144 7e-35
01_07_0270 - 42417782-42417850,42418207-42418342,42418826-424191... 140 6e-34
06_01_1074 - 8765183-8765278,8765657-8765749,8766520-8766600,876... 30 1.3
05_03_0634 + 16432679-16433076,16433358-16433610,16433993-164342... 30 1.3
01_07_0054 - 40779336-40779599,40779734-40779848,40779998-407801... 30 1.3
08_02_0802 + 21386248-21387468 29 3.0
07_03_1296 + 25583195-25584385 29 3.0
01_05_0305 + 20659199-20660026,20660147-20660179 29 3.0
02_05_0460 - 29224525-29224620,29225525-29226625 28 5.2
01_06_1758 - 39681942-39682030,39682115-39682345,39682643-396826... 28 5.2
12_02_0020 - 12388777-12389062,12389637-12389818 28 6.8
08_02_0955 + 22994266-22995630 27 9.0
03_05_0528 - 25268396-25269217 27 9.0
>02_04_0177 +
20669053-20669055,20669150-20669198,20669680-20669962,
20670526-20670661,20671014-20671094
Length = 183
Score = 145 bits (351), Expect = 3e-35
Identities = 80/165 (48%), Positives = 103/165 (62%), Gaps = 7/165 (4%)
Frame = +3
Query: 42 MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELXKIPNLQVIKAMQSLKSRGYVKEQF 221
M++PK+NR I +YLF+EGV+ AKKDY+ KH ++ +PNLQVIK MQS KS+ YV+E F
Sbjct: 1 MIIPKKNRNEICKYLFQEGVLYAKKDYNLAKHPQID-VPNLQVIKLMQSFKSKEYVRETF 59
Query: 222 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRT--ETVRRGPVG-RPDAPARSAE 392
+W+++YWYLTN+GIE+LR +L+LP EIVPATLK+S R GP G RP P R
Sbjct: 60 SWQYYYWYLTNDGIEHLRNYLNLPSEIVPATLKKSARPPGRPFGSGPPGDRPRGPPRFEG 119
Query: 393 DRSAYRRTPAAPGVAPHDKKADVG--PGSADLEFXGGY--GRGRP 515
DR + G P D G G A EF + GRP
Sbjct: 120 DRPRFGDRDGYRG-GPRGAPGDFGGEKGGAPAEFQPSFRSSGGRP 163
>04_03_0970 +
21338072-21338074,21338192-21338240,21338688-21338970,
21339570-21339705,21339761-21339769
Length = 159
Score = 144 bits (348), Expect = 7e-35
Identities = 77/154 (50%), Positives = 99/154 (64%), Gaps = 5/154 (3%)
Frame = +3
Query: 42 MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELXKIPNLQVIKAMQSLKSRGYVKEQF 221
M++PK+NR I +YLF+EGV+ AKKDY+ KH ++ +PNLQVIK MQS KS+ YV+E F
Sbjct: 1 MIIPKKNRNEICKYLFQEGVLYAKKDYNLAKHPQID-VPNLQVIKLMQSFKSKEYVRETF 59
Query: 222 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRT--ETVRRGPVG-RPDAPARSAE 392
+W+++YWYLTN+GIE+LR +L+LP EIVPATLK+S R GP G RP P R
Sbjct: 60 SWQYYYWYLTNDGIEHLRNYLNLPSEIVPATLKKSARPPGRPFGSGPPGDRPRGPPRFEG 119
Query: 393 DRSAYRRTPAAPGVAPHDKKADVG--PGSADLEF 488
DR + G P D G G A EF
Sbjct: 120 DRPRFGDRDGYRG-GPRGAPGDFGGEKGGAPAEF 152
>01_07_0270 -
42417782-42417850,42418207-42418342,42418826-42419108,
42419459-42419507,42419614-42419616
Length = 179
Score = 140 bits (340), Expect = 6e-34
Identities = 75/163 (46%), Positives = 100/163 (61%), Gaps = 5/163 (3%)
Frame = +3
Query: 42 MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELXKIPNLQVIKAMQSLKSRGYVKEQF 221
M++ K+NR I +YLF EGV+ AKKDY+ KH ++ +PNL+VIK MQS KS+ YV+E F
Sbjct: 1 MIISKKNRREICKYLFHEGVLYAKKDYNLAKHPKVD-VPNLEVIKLMQSFKSKEYVRETF 59
Query: 222 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVR--TETVRRGPVG-RPDAPARSAE 392
+W+H+YWYLTN+GIE+LR +L+LP E+VP TLK+S + + GP G RP P R
Sbjct: 60 SWQHYYWYLTNDGIEHLRSYLNLPSEVVPNTLKKSAKPPSRPFGSGPPGDRPRGPPRFEG 119
Query: 393 DRSAYRRTPAAPGVAPHDKKADVG--PGSADLEFXGGYGRGRP 515
DR + G P D G G A EF + RP
Sbjct: 120 DRPRFGDRDGYRG-GPRGAPGDFGGEKGGAPAEFQPSFRGSRP 161
>06_01_1074 -
8765183-8765278,8765657-8765749,8766520-8766600,
8767092-8767173,8767261-8767313,8767391-8767456,
8767534-8767697,8768028-8768295
Length = 300
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/44 (40%), Positives = 20/44 (45%)
Frame = +3
Query: 384 SAEDRSAYRRTPAAPGVAPHDKKADVGPGSADLEFXGGYGRGRP 515
SA RS R TP P + PH K+A P S L G G P
Sbjct: 3 SAAPRS--RLTPPTPAMHPHRKRARSPPASGSLVRCSSSGNGAP 44
>05_03_0634 +
16432679-16433076,16433358-16433610,16433993-16434291,
16434553-16434729,16435001-16435621,16435690-16435784,
16436000-16436088,16436185-16436250,16436475-16437026,
16437879-16437953,16438305-16438375,16438456-16438513,
16441506-16442048
Length = 1098
Score = 30.3 bits (65), Expect = 1.3
Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 8/83 (9%)
Frame = +3
Query: 171 IKAMQSLKSRGYVKEQFAWRH---FYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTET 341
I + L S G WR F+ YLT E I YL +HL + +T RS+ +
Sbjct: 605 ISSNAQLDSPGSANSSPFWRQVEPFFSYLTTEDIAYLSQQIHLSDD---STASRSIEGDE 661
Query: 342 VRRGP-----VGRPDAPARSAED 395
R+ + +P PA S +D
Sbjct: 662 SRKYKGSLEYISQPSTPAGSNKD 684
>01_07_0054 -
40779336-40779599,40779734-40779848,40779998-40780181,
40780322-40780393,40780485-40780611,40780830-40781011,
40781099-40781249
Length = 364
Score = 30.3 bits (65), Expect = 1.3
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Frame = +3
Query: 72 IYEYLFKEGVMVA-KKDYHAPKHTELXKIPNLQVIKAMQSLKSRGYVKEQFAWRHFYWYL 248
+Y+ L ++G +VA KK + P H + ++ L I+ + GY +E Y Y+
Sbjct: 84 VYKGLLQDGTIVAIKKRHSPPSHEFIHEVNYLSSIRHRNLVNLLGYCQENGMQMLVYEYV 143
Query: 249 TNEGIE-YLRIFLHLP 293
N + +L H P
Sbjct: 144 PNGSVSTHLHGSSHAP 159
>08_02_0802 + 21386248-21387468
Length = 406
Score = 29.1 bits (62), Expect = 3.0
Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Frame = -1
Query: 478 SAEPGPTSAFLS*GATPGAAGVRLYADLSSAE-RAGASGRPTGPRRTVSVRTERLSVAGT 302
S P P+S F G V DLS A R + RP GPR + R E +++
Sbjct: 123 SGSPEPSSGFFVAVVVDGEM-VLAAGDLSDAAYRRTRARRPAGPRPVLLSRREHVAMRDA 181
Query: 301 ISGGR 287
GGR
Sbjct: 182 GRGGR 186
>07_03_1296 + 25583195-25584385
Length = 396
Score = 29.1 bits (62), Expect = 3.0
Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
Frame = +3
Query: 282 LHLPPEIVPATLKRSVR--TETVRRGPVGRPDAPARSAEDRSAYRRTPA---APGVAPHD 446
LHL P PA +KRS R + + P DA R ++ A+ + AP +AP
Sbjct: 76 LHLQPNPDPAEVKRSYRRLSNLLSSNPRPGADAALRCVQEAFAHLSDSSANPAPALAPPP 135
Query: 447 KKADVGPGSA 476
A G SA
Sbjct: 136 APASGGDASA 145
>01_05_0305 + 20659199-20660026,20660147-20660179
Length = 286
Score = 29.1 bits (62), Expect = 3.0
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 7/59 (11%)
Frame = +3
Query: 282 LHLPPEI-----VPATLKRSVRTETVRRGPVG--RPDAPARSAEDRSAYRRTPAAPGVA 437
L LPP + A S+ TV GP G +P P + +++RR P+A GV+
Sbjct: 122 LKLPPRLQAAAAAAAAADSSLSPNTVLHGPYGGNKPPRPLTRSGSTASHRRKPSAVGVS 180
>02_05_0460 - 29224525-29224620,29225525-29226625
Length = 398
Score = 28.3 bits (60), Expect = 5.2
Identities = 17/41 (41%), Positives = 17/41 (41%)
Frame = +3
Query: 354 PVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSA 476
PV APA AE S R P P PH A V SA
Sbjct: 270 PVSPASAPAALAESSSEELRPPPLPSSHPHAHAAAVVAASA 310
>01_06_1758 -
39681942-39682030,39682115-39682345,39682643-39682679,
39683604-39683835,39683937-39684022,39684126-39684218,
39684302-39684465,39684541-39684702,39684783-39684962,
39685079-39685515,39685614-39685669
Length = 588
Score = 28.3 bits (60), Expect = 5.2
Identities = 23/62 (37%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Frame = +3
Query: 330 RTETVRRGPVGRPDAPARSAEDRSAYRRTPAAPGVAP--HDKKADVGPGSADLEFXGGYG 503
R + PV APA + +AY PAAP VAP D G G GG+G
Sbjct: 17 RRSDLAGAPVLAASAPAAANPYAAAYAPAPAAP-VAPAGGDFSRFGGRGRGGGAGGGGWG 75
Query: 504 RG 509
RG
Sbjct: 76 RG 77
>12_02_0020 - 12388777-12389062,12389637-12389818
Length = 155
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 357 VGRPDAPARSAEDRSAYRRTPAAP 428
+GRP R E+RS +RTP+ P
Sbjct: 47 IGRPKGEGREWEERSRSQRTPSPP 70
>08_02_0955 + 22994266-22995630
Length = 454
Score = 27.5 bits (58), Expect = 9.0
Identities = 19/48 (39%), Positives = 23/48 (47%)
Frame = -1
Query: 484 SRSAEPGPTSAFLS*GATPGAAGVRLYADLSSAERAGASGRPTGPRRT 341
SRS P +A LS +TP +A V A S A A R PRR+
Sbjct: 45 SRSKTPPHNAAVLS--STPASAAVDFVAASDSDAGADADARLASPRRS 90
>03_05_0528 - 25268396-25269217
Length = 273
Score = 27.5 bits (58), Expect = 9.0
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +3
Query: 465 PGSADLEFXGGYGRG 509
PGS +LE GGYG G
Sbjct: 106 PGSTELEINGGYGEG 120
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,209,538
Number of Sequences: 37544
Number of extensions: 291291
Number of successful extensions: 936
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 932
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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