Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_A06
         (619 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003151-12|AAK18912.1|  149|Caenorhabditis elegans Ribosomal pr...   139   2e-33
AL032625-4|CAB63350.2|  792|Caenorhabditis elegans Hypothetical ...    30   1.2  
Z95621-2|CAB09131.1|  330|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z78019-9|CAB01457.1|  330|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z81038-13|CAB02755.1|  971|Caenorhabditis elegans Hypothetical p...    29   3.5  
Z68301-5|CAA92620.1|  301|Caenorhabditis elegans Hypothetical pr...    28   4.6  
V00148-1|CAA23464.1|  301|Caenorhabditis elegans protein ( Caeno...    28   4.6  
J01048-1|AAA27990.1|  301|Caenorhabditis elegans protein ( C.ele...    28   4.6  
AY347575-1|AAP97869.1|  301|Caenorhabditis elegans COLlagen stru...    28   4.6  
Z83127-4|CAB05631.1|  872|Caenorhabditis elegans Hypothetical pr...    28   6.1  
Z79694-6|CAB01958.1|  316|Caenorhabditis elegans Hypothetical pr...    28   6.1  
Z79694-5|CAB01961.1|  316|Caenorhabditis elegans Hypothetical pr...    28   6.1  
Z68335-1|CAA92729.1|  299|Caenorhabditis elegans Hypothetical pr...    28   6.1  
Z46791-3|CAA86757.1|  323|Caenorhabditis elegans Hypothetical pr...    27   8.1  
AL021482-3|CAA16340.3| 1499|Caenorhabditis elegans Hypothetical ...    27   8.1  
AF177199-1|AAK81894.1| 1455|Caenorhabditis elegans mutant dosage...    27   8.1  
AC024808-5|AAK29931.1|  789|Caenorhabditis elegans Hypothetical ...    27   8.1  

>AF003151-12|AAK18912.1|  149|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 10 protein.
          Length = 149

 Score =  139 bits (336), Expect = 2e-33
 Identities = 76/158 (48%), Positives = 94/158 (59%)
 Frame = +3

Query: 42  MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELXKIPNLQVIKAMQSLKSRGYVKEQF 221
           M +PK +   IYEYLF EGV VAKKD++A  H  +  + NL+VIK ++SL SR  VKEQF
Sbjct: 1   MFIPKSHTKLIYEYLFNEGVTVAKKDFNAKTHPNIEGVSNLEVIKTLKSLASRELVKEQF 60

Query: 222 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVRRGPVGRPDAPARSAEDRS 401
           AWRH+YWYLT+ GI YLR +L LP EIVPAT+K   R   V       P A      DR 
Sbjct: 61  AWRHYYWYLTDAGILYLREYLALPAEIVPATIKTKPREIRVPHED-RAPRAAQGEKGDRE 119

Query: 402 AYRRTPAAPGVAPHDKKADVGPGSADLEFXGGYGRGRP 515
           AYR           +K  + GPG A + +  G+GRG P
Sbjct: 120 AYRT----------EKVTEAGPGGAPV-YRAGFGRGAP 146


>AL032625-4|CAB63350.2|  792|Caenorhabditis elegans Hypothetical
           protein Y37H9A.3 protein.
          Length = 792

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/30 (50%), Positives = 16/30 (53%)
 Frame = +3

Query: 351 GPVGRPDAPARSAEDRSAYRRTPAAPGVAP 440
           G V RP APAR A   +  R  PAAP   P
Sbjct: 33  GRVSRPAAPARGAPPAARGRPAPAAPANVP 62


>Z95621-2|CAB09131.1|  330|Caenorhabditis elegans Hypothetical
           protein ZK863.2 protein.
          Length = 330

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 19/53 (35%), Positives = 22/53 (41%)
 Frame = +3

Query: 351 GPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSADLEFXGGYGRG 509
           GP G P AP    E  S   R+ ++PG  P       GP   D    GG G G
Sbjct: 146 GPDGNPGAPGNDGEAGSPGTRSISSPG--PAGPAGPPGPPGPDGAPGGGSGPG 196


>Z78019-9|CAB01457.1|  330|Caenorhabditis elegans Hypothetical
           protein ZK863.2 protein.
          Length = 330

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 19/53 (35%), Positives = 22/53 (41%)
 Frame = +3

Query: 351 GPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSADLEFXGGYGRG 509
           GP G P AP    E  S   R+ ++PG  P       GP   D    GG G G
Sbjct: 146 GPDGNPGAPGNDGEAGSPGTRSISSPG--PAGPAGPPGPPGPDGAPGGGSGPG 196


>Z81038-13|CAB02755.1|  971|Caenorhabditis elegans Hypothetical
           protein C25A1.10a protein.
          Length = 971

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +3

Query: 363 RPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSADLE 485
           + D+ + S++D +  ++TPA     P  KKA+    S+D E
Sbjct: 432 KADSSSDSSDDEAPAKKTPAKAAPKPASKKAESSSDSSDDE 472



 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +3

Query: 363 RPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSADLE 485
           + D+ + S++D +  ++TPA     P  KKA+    S+D E
Sbjct: 279 KADSSSDSSDDEAPAKKTPAKAAPKPVAKKAESSSDSSDDE 319


>Z68301-5|CAA92620.1|  301|Caenorhabditis elegans Hypothetical
           protein W01B6.7 protein.
          Length = 301

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 19/56 (33%), Positives = 21/56 (37%)
 Frame = +3

Query: 351 GPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSADLEFXGGYGRGRPA 518
           GP G P +PA  +    A    PA P        A  GPG       GG G   PA
Sbjct: 168 GPDGNPGSPAGPSGPGPAGPPGPAGPAGNDGAPGAPGGPGEPGASEQGGPGEPGPA 223


>V00148-1|CAA23464.1|  301|Caenorhabditis elegans protein (
           Caenorhabditis elegansgene Col-2 coding for a collagen.
           ).
          Length = 301

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 19/56 (33%), Positives = 21/56 (37%)
 Frame = +3

Query: 351 GPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSADLEFXGGYGRGRPA 518
           GP G P +PA  +    A    PA P        A  GPG       GG G   PA
Sbjct: 168 GPDGNPGSPAGPSGPGPAGPPGPAGPAGNDGAPGAPGGPGEPGASEQGGPGEPGPA 223


>J01048-1|AAA27990.1|  301|Caenorhabditis elegans protein (
           C.elegans (nematode)collagen 2 (col-2) gene, complete
           cds. ).
          Length = 301

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 19/56 (33%), Positives = 21/56 (37%)
 Frame = +3

Query: 351 GPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSADLEFXGGYGRGRPA 518
           GP G P +PA  +    A    PA P        A  GPG       GG G   PA
Sbjct: 168 GPDGNPGSPAGPSGPGPAGPPGPAGPAGNDGAPGAPGGPGEPGASEQGGPGEPGPA 223


>AY347575-1|AAP97869.1|  301|Caenorhabditis elegans COLlagen
           structural gene, probabledorsal and ventral cuticle
           component, from embryo to adult,but maximal in dauer
           (28.0 kD) (col-2) protein.
          Length = 301

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 19/56 (33%), Positives = 21/56 (37%)
 Frame = +3

Query: 351 GPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSADLEFXGGYGRGRPA 518
           GP G P +PA  +    A    PA P        A  GPG       GG G   PA
Sbjct: 168 GPDGNPGSPAGPSGPGPAGPPGPAGPAGNDGAPGAPGGPGEPGASEQGGPGEPGPA 223


>Z83127-4|CAB05631.1|  872|Caenorhabditis elegans Hypothetical
           protein T23F6.4 protein.
          Length = 872

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +3

Query: 351 GPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSAD 479
           G   +P A ++ A+D SAY+RT        H +K +  PG +D
Sbjct: 82  GDANKPRAWSKYAKDSSAYKRT--------HGEKEEANPGKSD 116


>Z79694-6|CAB01958.1|  316|Caenorhabditis elegans Hypothetical
           protein C15A11.6 protein.
          Length = 316

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 19/56 (33%), Positives = 22/56 (39%)
 Frame = +3

Query: 348 RGPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSADLEFXGGYGRGRP 515
           +GP G P APA+           PA    +P    A   PGS      G  GRG P
Sbjct: 153 KGPNGNPGAPAQGGGQGPPGPPGPAGSAGSPGQAGAPGNPGSPGKS--GQRGRGLP 206


>Z79694-5|CAB01961.1|  316|Caenorhabditis elegans Hypothetical
           protein C15A11.5 protein.
          Length = 316

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 19/56 (33%), Positives = 22/56 (39%)
 Frame = +3

Query: 348 RGPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSADLEFXGGYGRGRP 515
           +GP G P APA+           PA    +P    A   PGS      G  GRG P
Sbjct: 153 KGPNGNPGAPAQGGGQGPPGPPGPAGSAGSPGQAGAPGNPGSPGKS--GQRGRGLP 206


>Z68335-1|CAA92729.1|  299|Caenorhabditis elegans Hypothetical
           protein C29F4.1 protein.
          Length = 299

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/41 (34%), Positives = 17/41 (41%)
 Frame = +3

Query: 351 GPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGS 473
           GP G+P AP +   D       P  P   P    AD  PG+
Sbjct: 225 GPQGQPGAPGQPGHDGQPGAPGPKGPNGNPGAPGADGNPGA 265


>Z46791-3|CAA86757.1|  323|Caenorhabditis elegans Hypothetical
           protein C09G5.4 protein.
          Length = 323

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 15/43 (34%), Positives = 18/43 (41%)
 Frame = +3

Query: 348 RGPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSA 476
           +GP G+P  P +      A  R PA    AP    A   PG A
Sbjct: 152 QGPNGQPGHPGQGGSQGPAGPRGPAGDAGAPGQVGAPGNPGQA 194


>AL021482-3|CAA16340.3| 1499|Caenorhabditis elegans Hypothetical
            protein Y39A1B.3 protein.
          Length = 1499

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 18/48 (37%), Positives = 21/48 (43%)
 Frame = +3

Query: 306  PATLKRSVRTETVRRGPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDK 449
            P T+  S RT +       R   PA+S ED S     PAAP  A   K
Sbjct: 1432 PTTMSGSSRTTSRAANSRRRAPPPAQSDEDDSDSDDAPAAPRSAARRK 1479


>AF177199-1|AAK81894.1| 1455|Caenorhabditis elegans mutant dosage
            compensation protein protein.
          Length = 1455

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 18/48 (37%), Positives = 21/48 (43%)
 Frame = +3

Query: 306  PATLKRSVRTETVRRGPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDK 449
            P T+  S RT +       R   PA+S ED S     PAAP  A   K
Sbjct: 1388 PTTMSGSSRTTSRAANSRRRAPPPAQSDEDDSDSDDAPAAPRSAARRK 1435


>AC024808-5|AAK29931.1|  789|Caenorhabditis elegans Hypothetical
           protein Y53G8AM.8 protein.
          Length = 789

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +3

Query: 339 TVRRGPVGRPDAPARSAEDRSAYRRTPAA 425
           T+   PVGR ++ ARS ++ SA R+ P +
Sbjct: 8   TIENTPVGRGNSGARSHKEPSAKRKKPTS 36


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,984,874
Number of Sequences: 27780
Number of extensions: 258152
Number of successful extensions: 895
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 891
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)