Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_A05
(617 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CR541753-1|CAG46553.1| 129|Homo sapiens COX5B protein. 96 1e-19
M59250-1|AAA52060.1| 129|Homo sapiens COX5B protein. 95 2e-19
M19961-1|AAA52061.1| 129|Homo sapiens COX5B protein. 95 2e-19
CR541727-1|CAG46528.1| 129|Homo sapiens COX5B protein. 94 4e-19
BT006742-1|AAP35388.1| 129|Homo sapiens cytochrome c oxidase su... 94 4e-19
BC006229-1|AAH06229.1| 129|Homo sapiens cytochrome c oxidase su... 94 4e-19
AC017099-1|AAY24279.1| 129|Homo sapiens unknown protein. 94 4e-19
X62515-1|CAA44373.1| 4393|Homo sapiens Human basement membrane h... 32 1.4
AF013956-1|AAB80718.1| 558|Homo sapiens Polycomb 2 homolog prot... 32 1.4
BC014967-1|AAH14967.1| 290|Homo sapiens CBX4 protein protein. 32 1.9
AY390430-1|AAQ97596.1| 290|Homo sapiens NS5ATP1-binding protein... 32 1.9
M85289-1|AAA52700.1| 4391|Homo sapiens heparan sulfate proteogly... 31 4.3
AL590556-2|CAH71870.1| 4391|Homo sapiens heparan sulfate proteog... 31 4.3
AL590103-2|CAI12125.1| 4391|Homo sapiens heparan sulfate proteog... 31 4.3
AL445795-1|CAC18534.1| 4370|Homo sapiens heparan sulfate proteog... 31 4.3
J05175-1|AAA36792.1| 353|Homo sapiens protein ( Human histo-blo... 30 7.5
>CR541753-1|CAG46553.1| 129|Homo sapiens COX5B protein.
Length = 129
Score = 95.9 bits (228), Expect = 1e-19
Identities = 45/85 (52%), Positives = 58/85 (68%), Gaps = 1/85 (1%)
Frame = +2
Query: 158 MPDPLEHATGLERKELLALQAGNDDPFNMKVVKKSAGTRENPTLVPSCFDARIVGCICEE 337
+P E ATGLER+ +LA + G D P+N+ K ++GTRE+P LVPS D RIVGCICEE
Sbjct: 37 VPTDEEQATGLEREIMLAAKKGLD-PYNVLAPKGASGTREDPNLVPSISDKRIVGCICEE 95
Query: 338 HATAITWLWLHKDQPRRC-ECGHWY 409
T++ W WLHK + +RC CG Y
Sbjct: 96 DNTSVVWFWLHKGEAQRCPRCGAHY 120
>M59250-1|AAA52060.1| 129|Homo sapiens COX5B protein.
Length = 129
Score = 95.1 bits (226), Expect = 2e-19
Identities = 45/85 (52%), Positives = 58/85 (68%), Gaps = 1/85 (1%)
Frame = +2
Query: 158 MPDPLEHATGLERKELLALQAGNDDPFNMKVVKKSAGTRENPTLVPSCFDARIVGCICEE 337
+P E ATGLER+ +LA + G D P+N+ K ++GTRE+P LVPS + RIVGCICEE
Sbjct: 37 VPTDEEQATGLEREIMLAAKKGLD-PYNVLAPKGASGTREDPNLVPSISNKRIVGCICEE 95
Query: 338 HATAITWLWLHKDQPRRC-ECGHWY 409
T++ W WLHK Q +RC CG Y
Sbjct: 96 DNTSVVWFWLHKGQAQRCPRCGAHY 120
>M19961-1|AAA52061.1| 129|Homo sapiens COX5B protein.
Length = 129
Score = 95.1 bits (226), Expect = 2e-19
Identities = 45/85 (52%), Positives = 58/85 (68%), Gaps = 1/85 (1%)
Frame = +2
Query: 158 MPDPLEHATGLERKELLALQAGNDDPFNMKVVKKSAGTRENPTLVPSCFDARIVGCICEE 337
+P E ATGLER+ +LA + G D P+N+ K ++GTRE+P LVPS + RIVGCICEE
Sbjct: 37 VPTDEEQATGLEREIMLAAKKGLD-PYNVLAPKGASGTREDPNLVPSISNKRIVGCICEE 95
Query: 338 HATAITWLWLHKDQPRRC-ECGHWY 409
T++ W WLHK Q +RC CG Y
Sbjct: 96 DNTSVVWFWLHKGQAQRCPRCGAHY 120
>CR541727-1|CAG46528.1| 129|Homo sapiens COX5B protein.
Length = 129
Score = 93.9 bits (223), Expect = 4e-19
Identities = 44/85 (51%), Positives = 58/85 (68%), Gaps = 1/85 (1%)
Frame = +2
Query: 158 MPDPLEHATGLERKELLALQAGNDDPFNMKVVKKSAGTRENPTLVPSCFDARIVGCICEE 337
+P E ATGLER+ +LA + G D P+N+ K ++GTRE+P LVPS + RIVGCICEE
Sbjct: 37 VPTDEEQATGLEREIMLAAKKGLD-PYNVLAPKGASGTREDPNLVPSISNKRIVGCICEE 95
Query: 338 HATAITWLWLHKDQPRRC-ECGHWY 409
T++ W WLHK + +RC CG Y
Sbjct: 96 DNTSVVWFWLHKGEAQRCPRCGAHY 120
>BT006742-1|AAP35388.1| 129|Homo sapiens cytochrome c oxidase
subunit Vb protein.
Length = 129
Score = 93.9 bits (223), Expect = 4e-19
Identities = 44/85 (51%), Positives = 58/85 (68%), Gaps = 1/85 (1%)
Frame = +2
Query: 158 MPDPLEHATGLERKELLALQAGNDDPFNMKVVKKSAGTRENPTLVPSCFDARIVGCICEE 337
+P E ATGLER+ +LA + G D P+N+ K ++GTRE+P LVPS + RIVGCICEE
Sbjct: 37 VPTDEEQATGLEREIMLAAKKGLD-PYNVLAPKGASGTREDPNLVPSISNKRIVGCICEE 95
Query: 338 HATAITWLWLHKDQPRRC-ECGHWY 409
T++ W WLHK + +RC CG Y
Sbjct: 96 DNTSVVWFWLHKGEAQRCPRCGAHY 120
>BC006229-1|AAH06229.1| 129|Homo sapiens cytochrome c oxidase
subunit Vb protein.
Length = 129
Score = 93.9 bits (223), Expect = 4e-19
Identities = 44/85 (51%), Positives = 58/85 (68%), Gaps = 1/85 (1%)
Frame = +2
Query: 158 MPDPLEHATGLERKELLALQAGNDDPFNMKVVKKSAGTRENPTLVPSCFDARIVGCICEE 337
+P E ATGLER+ +LA + G D P+N+ K ++GTRE+P LVPS + RIVGCICEE
Sbjct: 37 VPTDEEQATGLEREIMLAAKKGLD-PYNVLAPKGASGTREDPNLVPSISNKRIVGCICEE 95
Query: 338 HATAITWLWLHKDQPRRC-ECGHWY 409
T++ W WLHK + +RC CG Y
Sbjct: 96 DNTSVVWFWLHKGEAQRCPRCGAHY 120
>AC017099-1|AAY24279.1| 129|Homo sapiens unknown protein.
Length = 129
Score = 93.9 bits (223), Expect = 4e-19
Identities = 44/85 (51%), Positives = 58/85 (68%), Gaps = 1/85 (1%)
Frame = +2
Query: 158 MPDPLEHATGLERKELLALQAGNDDPFNMKVVKKSAGTRENPTLVPSCFDARIVGCICEE 337
+P E ATGLER+ +LA + G D P+N+ K ++GTRE+P LVPS + RIVGCICEE
Sbjct: 37 VPTDEEQATGLEREIMLAAKKGLD-PYNVLAPKGASGTREDPNLVPSISNKRIVGCICEE 95
Query: 338 HATAITWLWLHKDQPRRC-ECGHWY 409
T++ W WLHK + +RC CG Y
Sbjct: 96 DNTSVVWFWLHKGEAQRCPRCGAHY 120
>X62515-1|CAA44373.1| 4393|Homo sapiens Human basement membrane
heparan sulfate proteoglycan core protein protein.
Length = 4393
Score = 32.3 bits (70), Expect = 1.4
Identities = 22/72 (30%), Positives = 37/72 (51%)
Frame = +1
Query: 181 HWLGKEGTPGPSGRQ**PLQHEGSEEVSRNP*KPNSGTFLL*CSYCWMHL*RTRYSHHLA 360
+W ++G P PSG Q +H+GSE + ++G ++ C +L R+ S
Sbjct: 1711 YWSREDGRPVPSGTQ---QRHQGSELHFPSVQPSDAGVYICTC----RNLHRSNTSRAEL 1763
Query: 361 LVTQGPTAPLRV 396
LVT+ P+ P+ V
Sbjct: 1764 LVTEAPSKPITV 1775
>AF013956-1|AAB80718.1| 558|Homo sapiens Polycomb 2 homolog
protein.
Length = 558
Score = 32.3 bits (70), Expect = 1.4
Identities = 20/69 (28%), Positives = 33/69 (47%)
Frame = +2
Query: 80 CRQILRANAFRSVILPTARRGYADKMMPDPLEHATGLERKELLALQAGNDDPFNMKVVKK 259
C++ L A RS+ PT G P L A L + E++ L + D+P +++ VK
Sbjct: 422 CKKRLTA---RSISTPTCLGGSPAAERPADLPPAAALRQPEVILLDSDLDEPIDLRSVKS 478
Query: 260 SAGTRENPT 286
+ E P+
Sbjct: 479 RSEAGEPPS 487
>BC014967-1|AAH14967.1| 290|Homo sapiens CBX4 protein protein.
Length = 290
Score = 31.9 bits (69), Expect = 1.9
Identities = 20/69 (28%), Positives = 33/69 (47%)
Frame = +2
Query: 80 CRQILRANAFRSVILPTARRGYADKMMPDPLEHATGLERKELLALQAGNDDPFNMKVVKK 259
C++ L A RS+ PT G P L A L + E++ L + D+P +++ VK
Sbjct: 154 CKKRLTA---RSISTPTCLGGSPAAERPADLPPAAALPQPEVILLDSDLDEPIDLRCVKT 210
Query: 260 SAGTRENPT 286
+ E P+
Sbjct: 211 RSEAGEPPS 219
>AY390430-1|AAQ97596.1| 290|Homo sapiens NS5ATP1-binding protein 16
protein.
Length = 290
Score = 31.9 bits (69), Expect = 1.9
Identities = 20/69 (28%), Positives = 33/69 (47%)
Frame = +2
Query: 80 CRQILRANAFRSVILPTARRGYADKMMPDPLEHATGLERKELLALQAGNDDPFNMKVVKK 259
C++ L A RS+ PT G P L A L + E++ L + D+P +++ VK
Sbjct: 154 CKKRLTA---RSISTPTCLGGSPAAERPADLPPAAALPQPEVILLDSDLDEPIDLRCVKT 210
Query: 260 SAGTRENPT 286
+ E P+
Sbjct: 211 RSEAGEPPS 219
>M85289-1|AAA52700.1| 4391|Homo sapiens heparan sulfate proteoglycan
protein.
Length = 4391
Score = 30.7 bits (66), Expect = 4.3
Identities = 21/72 (29%), Positives = 37/72 (51%)
Frame = +1
Query: 181 HWLGKEGTPGPSGRQ**PLQHEGSEEVSRNP*KPNSGTFLL*CSYCWMHL*RTRYSHHLA 360
+W ++G P PSG Q +H+GSE + ++G ++ C +L ++ S
Sbjct: 1709 YWSREDGRPVPSGTQ---QRHQGSELHFPSVQPSDAGVYICTC----RNLHQSNTSRAEL 1761
Query: 361 LVTQGPTAPLRV 396
LVT+ P+ P+ V
Sbjct: 1762 LVTEAPSKPITV 1773
>AL590556-2|CAH71870.1| 4391|Homo sapiens heparan sulfate proteoglycan
2 protein.
Length = 4391
Score = 30.7 bits (66), Expect = 4.3
Identities = 21/72 (29%), Positives = 37/72 (51%)
Frame = +1
Query: 181 HWLGKEGTPGPSGRQ**PLQHEGSEEVSRNP*KPNSGTFLL*CSYCWMHL*RTRYSHHLA 360
+W ++G P PSG Q +H+GSE + ++G ++ C +L ++ S
Sbjct: 1709 YWSREDGRPVPSGTQ---QRHQGSELHFPSVQPSDAGVYICTC----RNLHQSNTSRAEL 1761
Query: 361 LVTQGPTAPLRV 396
LVT+ P+ P+ V
Sbjct: 1762 LVTEAPSKPITV 1773
>AL590103-2|CAI12125.1| 4391|Homo sapiens heparan sulfate proteoglycan
2 protein.
Length = 4391
Score = 30.7 bits (66), Expect = 4.3
Identities = 21/72 (29%), Positives = 37/72 (51%)
Frame = +1
Query: 181 HWLGKEGTPGPSGRQ**PLQHEGSEEVSRNP*KPNSGTFLL*CSYCWMHL*RTRYSHHLA 360
+W ++G P PSG Q +H+GSE + ++G ++ C +L ++ S
Sbjct: 1709 YWSREDGRPVPSGTQ---QRHQGSELHFPSVQPSDAGVYICTC----RNLHQSNTSRAEL 1761
Query: 361 LVTQGPTAPLRV 396
LVT+ P+ P+ V
Sbjct: 1762 LVTEAPSKPITV 1773
>AL445795-1|CAC18534.1| 4370|Homo sapiens heparan sulfate proteoglycan
perlecan protein.
Length = 4370
Score = 30.7 bits (66), Expect = 4.3
Identities = 21/72 (29%), Positives = 37/72 (51%)
Frame = +1
Query: 181 HWLGKEGTPGPSGRQ**PLQHEGSEEVSRNP*KPNSGTFLL*CSYCWMHL*RTRYSHHLA 360
+W ++G P PSG Q +H+GSE + ++G ++ C +L ++ S
Sbjct: 1688 YWSREDGRPVPSGTQ---QRHQGSELHFPSVQPSDAGVYICTC----RNLHQSNTSRAEL 1740
Query: 361 LVTQGPTAPLRV 396
LVT+ P+ P+ V
Sbjct: 1741 LVTEAPSKPITV 1752
>J05175-1|AAA36792.1| 353|Homo sapiens protein ( Human histo-blood
group A transferase (UDP-GalNAc) mRNA, complete cds. ).
Length = 353
Score = 29.9 bits (64), Expect = 7.5
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = +3
Query: 93 LEQMHLEVLFYPQPGGDMPTK*CLI--PWNMPLAWKG 197
L+++ L + YPQP P K L+ PW P+ W+G
Sbjct: 61 LQRVSLPRMVYPQPKVLTPWKDVLVVTPWLAPIVWEG 97
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,248,684
Number of Sequences: 237096
Number of extensions: 2178978
Number of successful extensions: 5613
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 4411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5606
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6635341780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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