Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_P21
         (539 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    24   0.98 
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    24   0.98 
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   2.3  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   2.3  
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    22   4.0  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    21   5.2  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    21   6.9  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    21   6.9  
AM292342-1|CAL23154.2|  386|Tribolium castaneum gustatory recept...    21   6.9  
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    21   9.2  

>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 23.8 bits (49), Expect = 0.98
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +1

Query: 199 QADHPRQVQRHHQVAGFQPTGRQG 270
           Q  HP+  Q HHQ       G+QG
Sbjct: 172 QEQHPQHHQPHHQQQHMMYGGQQG 195


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 23.8 bits (49), Expect = 0.98
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +1

Query: 199 QADHPRQVQRHHQVAGFQPTGRQG 270
           Q  HP+  Q HHQ       G+QG
Sbjct: 174 QEQHPQHHQPHHQQQHMMYGGQQG 197


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -1

Query: 278 HTPPCRPVGWNP 243
           H PP  PVG NP
Sbjct: 743 HQPPRNPVGTNP 754


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -1

Query: 278 HTPPCRPVGWNP 243
           H PP  PVG NP
Sbjct: 635 HQPPRNPVGTNP 646


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +2

Query: 143 SMKSTMEDEKLKEKISDSD 199
           S+ S  EDE+++ ++SD D
Sbjct: 18  SLLSKKEDEEVEHRLSDRD 36


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 388 PEPEVPPPGLEALAPPS 438
           P P+VPP  L  + PP+
Sbjct: 176 PLPQVPPLPLPPIFPPT 192


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = -2

Query: 196 RVRDLFLELLIL 161
           RV+DLFLE ++L
Sbjct: 581 RVKDLFLEAVLL 592



 Score = 20.6 bits (41), Expect = 9.2
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 63  RQRSTETRMTSKRRPSRPR 119
           R+RST ++ T     +RPR
Sbjct: 43  RKRSTSSQSTEGENDARPR 61


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 11/40 (27%), Positives = 16/40 (40%)
 Frame = +1

Query: 388 PEPEVPPPGLEALAPPSRRSIKPTFHTTRKPTCNNHLVTS 507
           P+ E+P P   +     + S+ PT   T  P     L  S
Sbjct: 73  PKREIPSPKRSSPILAEKVSVSPTTPPTPSPPPEERLTPS 112


>AM292342-1|CAL23154.2|  386|Tribolium castaneum gustatory receptor
           candidate 21 protein.
          Length = 386

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 71  KYRNEDDKQKETIQAKNALESY 136
           ++ N D  Q+ + +  NA ESY
Sbjct: 365 QFNNSDFVQRNSTEFDNATESY 386


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 8/23 (34%), Positives = 10/23 (43%)
 Frame = +1

Query: 430 PPSRRSIKPTFHTTRKPTCNNHL 498
           PP    I+P      +P CN  L
Sbjct: 95  PPIHHQIRPPILHDTQPMCNPQL 117


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,140
Number of Sequences: 336
Number of extensions: 2182
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13201902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)