Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_P19
(640 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 48 1e-06
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 42 8e-05
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 41 2e-04
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 40 4e-04
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 37 0.003
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 37 0.003
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 36 0.004
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 36 0.004
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 36 0.005
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 34 0.015
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 34 0.020
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 33 0.026
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 33 0.046
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 32 0.061
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 31 0.14
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 30 0.32
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 28 0.99
SPAC31G5.04 |||homoisocitrate dehydrogenase|Schizosaccharomyces ... 28 1.3
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc... 27 2.3
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 26 4.0
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 26 5.3
SPBC15C4.01c |oca3||TPR repeat protein Oca3|Schizosaccharomyces ... 26 5.3
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 48.0 bits (109), Expect = 1e-06
Identities = 24/57 (42%), Positives = 34/57 (59%)
Frame = +1
Query: 436 VRLLENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFV 606
+R L+ S C+ V LS YTTE+QI +FSK G + ++ + +D T GFCFV
Sbjct: 22 LRALDAVKQSNCVYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFV 78
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 41.9 bits (94), Expect = 8e-05
Identities = 18/49 (36%), Positives = 31/49 (63%)
Frame = +1
Query: 460 PSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFV 606
P + + + LS T E I F++YGP+++++VV + TG+S G+ FV
Sbjct: 98 PYKTMFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFV 146
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 40.7 bits (91), Expect = 2e-04
Identities = 18/49 (36%), Positives = 31/49 (63%)
Frame = +1
Query: 463 SRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVT 609
S L V LS T E+++ +F ++G + +V + D +TGR++GF FV+
Sbjct: 201 SATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVS 249
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 39.5 bits (88), Expect = 4e-04
Identities = 19/47 (40%), Positives = 28/47 (59%)
Frame = +1
Query: 484 GLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVTLRTWK 624
GL+ TT+ + F ++G V V+ D+ TGRSRGF F+T + K
Sbjct: 169 GLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPK 215
Score = 35.9 bits (79), Expect = 0.005
Identities = 15/36 (41%), Positives = 24/36 (66%)
Frame = +1
Query: 502 TEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVT 609
TE++ + F+++G V +++D TGR RGF FVT
Sbjct: 259 TEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVT 294
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 36.7 bits (81), Expect = 0.003
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = +1
Query: 472 LGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVT 609
L V L+ T + + + FS GP+ VV + +TG +RG+ FVT
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVT 52
Score = 30.3 bits (65), Expect = 0.25
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +1
Query: 502 TEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVTLR 615
TEQ++ + F ++GP+ ++V D T RS G F+ R
Sbjct: 289 TEQELYNHFRQFGPLAYAKLVKDPATDRSLGRGFIKFR 326
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 36.7 bits (81), Expect = 0.003
Identities = 18/49 (36%), Positives = 29/49 (59%)
Frame = +1
Query: 472 LGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVTLRT 618
L V G++ E ++ IFSK+G V V+++ + T SRGF F++ T
Sbjct: 103 LFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFST 151
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 36.3 bits (80), Expect = 0.004
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = +1
Query: 478 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVTLRT 618
V G+ TE+Q+ +F+ +GPV + + +D +TG +G+ + T
Sbjct: 14 VTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEYAT 60
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 36.3 bits (80), Expect = 0.004
Identities = 14/34 (41%), Positives = 24/34 (70%)
Frame = +1
Query: 502 TEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCF 603
+EQQ+ IF++ GPV ++V+D +TG +G+ F
Sbjct: 19 SEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGF 52
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 35.9 bits (79), Expect = 0.005
Identities = 17/48 (35%), Positives = 28/48 (58%)
Frame = +1
Query: 460 PSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCF 603
PS + V + E+Q+ IF + GPV Q+VID ++G+ +G+ F
Sbjct: 3 PSCVVYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGF 50
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 34.3 bits (75), Expect = 0.015
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = +1
Query: 487 LSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVTLRT 618
LS +Q + F +YG + +V++D ++GRS+G+ +V T
Sbjct: 270 LSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFET 313
Score = 33.9 bits (74), Expect = 0.020
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = +1
Query: 460 PSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVT 609
PS + V LS TE ++ F G + +++ D ++GR +GF +VT
Sbjct: 364 PSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVT 413
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 33.9 bits (74), Expect = 0.020
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +1
Query: 460 PSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFV 606
P L V L+ T ++ + IFS++G + QV+ D +TG S + F+
Sbjct: 242 PENVLFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFI 290
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 33.5 bits (73), Expect = 0.026
Identities = 18/56 (32%), Positives = 29/56 (51%)
Frame = +1
Query: 439 RLLENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFV 606
+L E R + V L+ T +++ F + GPV Q+V D +GRS+G +V
Sbjct: 231 KLSEEERDRRTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYV 286
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 32.7 bits (71), Expect = 0.046
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +1
Query: 460 PSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFV 606
PS L V L TT+ + F + G + +V+++ TG+ +GF FV
Sbjct: 226 PSSILFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFV 274
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 32.3 bits (70), Expect = 0.061
Identities = 16/35 (45%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
Frame = +1
Query: 505 EQQINHIFSKYG-PVDKVQVVIDAKTGRSRGFCFV 606
E I +FS++G PVD + +V D +TG+S+GF F+
Sbjct: 44 EDDILCVFSEFGEPVD-INLVRDKETGKSKGFAFL 77
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 31.1 bits (67), Expect = 0.14
Identities = 12/34 (35%), Positives = 24/34 (70%)
Frame = +1
Query: 505 EQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFV 606
E+Q+ FS++GPV ++++ + KTG S+ + F+
Sbjct: 118 EKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFI 151
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 29.9 bits (64), Expect = 0.32
Identities = 18/47 (38%), Positives = 24/47 (51%)
Frame = +1
Query: 478 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVTLRT 618
V LS TE + F + V +++VID T RSRGF +V T
Sbjct: 98 VGNLSFDLTENDLGDFFGE--GVTSIRLVIDPLTERSRGFGYVEFET 142
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 28.3 bits (60), Expect = 0.99
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = +1
Query: 478 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCF 603
+ L L E Q+ + +G + Q++ + G S+GFCF
Sbjct: 314 ISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCF 355
>SPAC31G5.04 |||homoisocitrate dehydrogenase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 362
Score = 27.9 bits (59), Expect = 1.3
Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Frame = -3
Query: 224 RLRLCPLDITAGFGT----GSREPLRVLERLLSRSDIAMFVVNKRDKSEISRIFS-INTL 60
+L+ +D+ AG+GT G P R +ERL + + A+F + +++ S I L
Sbjct: 37 KLKFDFIDLDAGWGTFERTGKALPERTVERLKTECNAALFGAVQSPTHKVAGYSSPIVAL 96
Query: 59 KRSTSIYRRDRTLKT 15
++ +Y R +K+
Sbjct: 97 RKKMGLYANVRPVKS 111
>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 997
Score = 27.1 bits (57), Expect = 2.3
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -3
Query: 605 TKQNPRERPVFASITTCTLSTGPYLEKIW 519
+K NP + P A++T C T +++K+W
Sbjct: 103 SKNNPNQNPQAAALTKCREQT--FVDKVW 129
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 26.2 bits (55), Expect = 4.0
Identities = 11/42 (26%), Positives = 22/42 (52%)
Frame = +1
Query: 490 SLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVTLR 615
++ T + Q+ +FS +G + + +G S+G+ FV R
Sbjct: 392 TVITCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAFR 433
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 25.8 bits (54), Expect = 5.3
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +1
Query: 508 QQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVT 609
QQ+ +FSK+G + + T S+G+ FV+
Sbjct: 435 QQLEELFSKFGRIKSCTLASYPSTEISKGYGFVS 468
>SPBC15C4.01c |oca3||TPR repeat protein Oca3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 282
Score = 25.8 bits (54), Expect = 5.3
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = -3
Query: 617 VLKVTKQNPRERPVFASITTCTLSTGPYLEKIW 519
+LKV QNP+E S G Y ++IW
Sbjct: 5 ILKVPDQNPQEIVALFSQQEAYAKLGKYKDEIW 37
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,226,680
Number of Sequences: 5004
Number of extensions: 40978
Number of successful extensions: 126
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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