Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_P19
(640 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_28070| Best HMM Match : RRM_1 (HMM E-Value=1.3e-07) 56 2e-08
SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36) 47 1e-05
SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 2e-04
SB_17244| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 2e-04
SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.004
SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38) 38 0.009
SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.009
SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18) 37 0.012
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33) 37 0.016
SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0) 37 0.016
SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.016
SB_1157| Best HMM Match : RRM_1 (HMM E-Value=1.2e-11) 36 0.021
SB_53534| Best HMM Match : RRM_1 (HMM E-Value=1e-18) 36 0.028
SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.028
SB_14872| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.037
SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.049
SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0) 34 0.085
SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.15
SB_52510| Best HMM Match : RRM_1 (HMM E-Value=8.1e-21) 33 0.20
SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25) 33 0.20
SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.20
SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.26
SB_47564| Best HMM Match : RRM_1 (HMM E-Value=0.23) 33 0.26
SB_21838| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.26
SB_20581| Best HMM Match : RRM_1 (HMM E-Value=1.7e-07) 32 0.34
SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20) 32 0.34
SB_18756| Best HMM Match : Sterol_desat (HMM E-Value=0) 32 0.45
SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18) 31 0.60
SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23) 31 0.79
SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24) 31 1.0
SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0) 31 1.0
SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28) 30 1.4
SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16) 30 1.4
SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_37827| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_877| Best HMM Match : RRM_1 (HMM E-Value=1e-15) 29 3.2
SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0) 29 4.2
SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0) 29 4.2
SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07) 28 5.6
SB_40383| Best HMM Match : IQ (HMM E-Value=0.00047) 28 5.6
SB_3951| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_2588| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_25960| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
>SB_28070| Best HMM Match : RRM_1 (HMM E-Value=1.3e-07)
Length = 694
Score = 56.0 bits (129), Expect = 2e-08
Identities = 22/34 (64%), Positives = 28/34 (82%)
Frame = +1
Query: 469 CLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVID 570
CLGVFGLSLYTTE+ + +F KYGPV+ +Q+V D
Sbjct: 182 CLGVFGLSLYTTERDLRPVFEKYGPVEAIQIVYD 215
>SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36)
Length = 328
Score = 47.2 bits (107), Expect = 1e-05
Identities = 23/48 (47%), Positives = 30/48 (62%)
Frame = +1
Query: 472 LGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVTLR 615
L V GLS TT++ + FSKYG + V + +DA TGR RGF FV +
Sbjct: 31 LFVGGLSYETTKESLKEYFSKYGELVGVDIKMDALTGRPRGFAFVQFK 78
Score = 38.7 bits (86), Expect = 0.004
Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Frame = +1
Query: 478 VFGLSLYTTEQQINHIFSK-YGPVDKVQVVIDAKTGRSRGFCFVT 609
V GL T++++I F K Y PV +++ + + + R RGFCFV+
Sbjct: 107 VGGLKPETSDEKIREYFGKAYAPVKEIEYITEHSSNRRRGFCFVS 151
>SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 43.2 bits (97), Expect = 2e-04
Identities = 19/46 (41%), Positives = 28/46 (60%)
Frame = +1
Query: 478 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVTLR 615
V GL TTE ++ F+++G +D +V +D T RSRGF FV +
Sbjct: 119 VLGLPYATTESEMKEYFTRFGEIDFCEVKLDPNTRRSRGFGFVRFK 164
>SB_17244| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 299
Score = 43.2 bits (97), Expect = 2e-04
Identities = 22/59 (37%), Positives = 32/59 (54%)
Frame = +1
Query: 451 NPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVTLRTWKM 627
N P L V GL+ TT + + F YG + V V+ D+ T +SRGF +VT +K+
Sbjct: 9 NNDPRAKLFVGGLNRETTNETLREYFEAYGELTDVVVICDSATKKSRGFGYVTFADYKV 67
>SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 291
Score = 38.7 bits (86), Expect = 0.004
Identities = 20/51 (39%), Positives = 33/51 (64%)
Frame = +1
Query: 466 RCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVTLRT 618
R L + L+ + E +I F ++G V+KV ++ D ++GRSRGF FV L++
Sbjct: 9 RKLYIGNLNFNSDEGEIEQAFEEFG-VEKVDILRDKESGRSRGFGFVLLQS 58
>SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38)
Length = 496
Score = 37.5 bits (83), Expect = 0.009
Identities = 21/48 (43%), Positives = 30/48 (62%)
Frame = +1
Query: 466 RCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVT 609
R + + GL+ TTE+ + FS++G + V VI + GRSRGF FVT
Sbjct: 50 RKIFIGGLNWNTTEEGLKDYFSQWGTI--VDCVIMKRDGRSRGFGFVT 95
>SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 828
Score = 37.5 bits (83), Expect = 0.009
Identities = 17/53 (32%), Positives = 30/53 (56%)
Frame = +1
Query: 460 PSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVTLRT 618
P L V+ + ++ I +F + G V+KV ++ D + + +GFCFVT+ T
Sbjct: 273 PGCTLYVYNIGYDANQEGITALFGQCGIVNKVDIMWDWQRQQCKGFCFVTMAT 325
>SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18)
Length = 209
Score = 37.1 bits (82), Expect = 0.012
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = +1
Query: 460 PSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFV 606
P L V L+ TT++ + IFS++G + +V+ D KTG S + F+
Sbjct: 118 PDNVLFVCKLNPVTTDEDLEIIFSRFGTILSCEVIRDQKTGESLQYAFI 166
>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
Length = 392
Score = 36.7 bits (81), Expect = 0.016
Identities = 16/46 (34%), Positives = 28/46 (60%)
Frame = +1
Query: 466 RCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCF 603
R + V + +E+Q+ IFS+ GPV ++V D +TG+ +G+ F
Sbjct: 25 RSVFVGNIPYEASEEQLKEIFSEVGPVISFRLVFDRETGKPKGYGF 70
>SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 420
Score = 36.7 bits (81), Expect = 0.016
Identities = 21/50 (42%), Positives = 27/50 (54%)
Frame = +1
Query: 466 RCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVTLR 615
R L V LS T E + F YG V KV ++ D +TG+S+G V LR
Sbjct: 319 RTLFVDNLSEDTKELDVLRYFRPYGQVAKVHILTDRETGKSKGCGVVKLR 368
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +1
Query: 466 RCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRG 594
R + V GL + TEQ + F K+G ++ V+ + + G G
Sbjct: 157 RVIYVGGLPSHFTEQTVREHFKKFGVIEAVKFIENTSVGAKTG 199
>SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 36.7 bits (81), Expect = 0.016
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +1
Query: 472 LGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFV 606
L V L+ TT + + +F KYG + + + D T SRGF FV
Sbjct: 18 LKVDNLTYRTTVEDLKQVFKKYGDLGDIYIPRDRNTHESRGFAFV 62
>SB_1157| Best HMM Match : RRM_1 (HMM E-Value=1.2e-11)
Length = 248
Score = 36.3 bits (80), Expect = 0.021
Identities = 23/53 (43%), Positives = 28/53 (52%)
Frame = +1
Query: 466 RCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVTLRTWK 624
RC + LS EQ + F VD V+V+ D +TGR RGF FVTL K
Sbjct: 83 RCY-IGNLSYSVDEQALEEKFHDCNVVD-VRVITDRETGRPRGFGFVTLEAKK 133
>SB_53534| Best HMM Match : RRM_1 (HMM E-Value=1e-18)
Length = 268
Score = 35.9 bits (79), Expect = 0.028
Identities = 18/52 (34%), Positives = 31/52 (59%)
Frame = +1
Query: 463 SRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVTLRT 618
S+ + V G + TTE ++ F +YG V + ++V D K G S+G+ F+T +
Sbjct: 7 SKRIFVKGFNRETTESELRAFFEEYGVVKESKIVRD-KHGVSKGYAFITFES 57
>SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 35.9 bits (79), Expect = 0.028
Identities = 20/46 (43%), Positives = 25/46 (54%)
Frame = +1
Query: 487 LSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVTLRTWK 624
L E + FS+Y VD VQV+ D +T R RGF FVT + K
Sbjct: 237 LDFKVNEADLQDRFSRYDVVD-VQVISDRETQRPRGFAFVTFGSKK 281
Score = 31.1 bits (67), Expect = 0.79
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Frame = +1
Query: 466 RCLGVFGLSLYTTEQQINHIFSKYGP--VDKVQVVIDAKTGRSRGFCFVT 609
+CL V + L E + + +F + G + V+V+ D +TGR RGF FVT
Sbjct: 8 KCL-VASIPLCFVESEADVLFLRNGSKFLLSVKVITDRETGRPRGFGFVT 56
>SB_14872| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1182
Score = 35.5 bits (78), Expect = 0.037
Identities = 14/32 (43%), Positives = 22/32 (68%)
Frame = +1
Query: 499 TTEQQINHIFSKYGPVDKVQVVIDAKTGRSRG 594
TTE ++ FS +GPV V++V D +TG ++G
Sbjct: 1077 TTELELETFFSNFGPVADVRIVCDRRTGLNKG 1108
>SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 721
Score = 35.1 bits (77), Expect = 0.049
Identities = 17/58 (29%), Positives = 28/58 (48%)
Frame = +1
Query: 451 NPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVTLRTWK 624
+P L V + E I+ +FS YG + + V +D +TG +G+ V T+K
Sbjct: 288 HPVEGWILFVTNIHEEAQEDDIHELFSDYGEIKNLHVNLDRRTGFIKGYALVEYETFK 345
>SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 1026
Score = 34.3 bits (75), Expect = 0.085
Identities = 15/44 (34%), Positives = 27/44 (61%)
Frame = +1
Query: 487 LSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVTLRT 618
LS +T++ I ++F ++G + +VV+D T S+G FV R+
Sbjct: 423 LSFDSTQKNITNLFKQFGDIAYCKVVVDHLTQHSKGSAFVKYRS 466
>SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 215
Score = 33.5 bits (73), Expect = 0.15
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +1
Query: 460 PSRCLGVFGLSLYT-TEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFV 606
PS+ G Y+ T ++ +F +YG V KV ++ D +T SRG F+
Sbjct: 7 PSKSTVYVGNLPYSLTNSDLHKVFERYGKVVKVTILRDKETRESRGVAFI 56
>SB_52510| Best HMM Match : RRM_1 (HMM E-Value=8.1e-21)
Length = 304
Score = 33.1 bits (72), Expect = 0.20
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +1
Query: 478 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFV 606
V LS T E + +F GP+ ++ + D T +S+GF F+
Sbjct: 185 VTNLSEETRESDLQELFRPLGPISRIFLAKDKFTNQSKGFAFI 227
>SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25)
Length = 159
Score = 33.1 bits (72), Expect = 0.20
Identities = 21/48 (43%), Positives = 26/48 (54%)
Frame = +1
Query: 466 RCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVT 609
RC + LS EQ + F VD V+V+ D +TGR RGF FVT
Sbjct: 6 RCY-IGNLSYSVDEQALEEKFHGCDVVD-VKVITDRETGRPRGFGFVT 51
>SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 871
Score = 33.1 bits (72), Expect = 0.20
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = +1
Query: 460 PSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVTLRT 618
P L V L TE Q + S YG ++++ +V TG S+G+ FV T
Sbjct: 111 PESLLFVGNLPFEFTETQFGDLMSPYGNIERLFLVRSEVTGDSKGYGFVEYAT 163
Score = 31.5 bits (68), Expect = 0.60
Identities = 16/35 (45%), Positives = 19/35 (54%)
Frame = +1
Query: 514 INHIFSKYGPVDKVQVVIDAKTGRSRGFCFVTLRT 618
I +FS+ G V QV I+ G SRGF FV T
Sbjct: 222 IKELFSQTGNVTFAQVAINPANGGSRGFAFVDYAT 256
>SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1208
Score = 32.7 bits (71), Expect = 0.26
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +1
Query: 535 YGPVDKVQVVIDAKTGRSRGFCFV 606
YG + V +V D KTG+ +GFCF+
Sbjct: 2 YGEIVNVNLVRDKKTGKQKGFCFL 25
>SB_47564| Best HMM Match : RRM_1 (HMM E-Value=0.23)
Length = 44
Score = 32.7 bits (71), Expect = 0.26
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +1
Query: 535 YGPVDKVQVVIDAKTGRSRGFCFV 606
YG + V +V D KTG+ +GFCF+
Sbjct: 2 YGEIVNVNLVRDKKTGKQKGFCFL 25
>SB_21838| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 949
Score = 32.7 bits (71), Expect = 0.26
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +1
Query: 541 PVDKVQVVIDAKTGRSRGFCFVTLRT 618
P+ ++++ D TG SRGFCFV L T
Sbjct: 435 PIYDIRLIKDKVTGTSRGFCFVELAT 460
>SB_20581| Best HMM Match : RRM_1 (HMM E-Value=1.7e-07)
Length = 97
Score = 32.3 bits (70), Expect = 0.34
Identities = 19/54 (35%), Positives = 27/54 (50%)
Frame = +1
Query: 445 LENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFV 606
++NP SR V S + I F +YG ++ V VV D T +RG C+V
Sbjct: 18 VDNPPFSRVFIV--CSKRHNAEDIRSAFEQYGTIEDVWVVKDKATKENRGVCYV 69
>SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)
Length = 1313
Score = 32.3 bits (70), Expect = 0.34
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = +1
Query: 439 RLLENPTPSRC-LGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFV 606
R +PTP L V L+ + + IFS YG V V + D SRGF +V
Sbjct: 1147 RRKRSPTPKPTKLYVAHLTRNVNKDHVQEIFSVYGRVKTVDLPTDRTNNLSRGFAYV 1203
>SB_18756| Best HMM Match : Sterol_desat (HMM E-Value=0)
Length = 672
Score = 31.9 bits (69), Expect = 0.45
Identities = 12/38 (31%), Positives = 24/38 (63%)
Frame = +1
Query: 502 TEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVTLR 615
T++ + F+KY K ++V D K+ +S+G+ FV+ +
Sbjct: 229 TDESLTRAFAKYTSFLKAKIVRDKKSNKSKGYGFVSFK 266
>SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18)
Length = 291
Score = 31.5 bits (68), Expect = 0.60
Identities = 14/49 (28%), Positives = 28/49 (57%)
Frame = +1
Query: 472 LGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVTLRT 618
L V G+ + + + F+++G + + V+ D T +S+G+ FVT+ T
Sbjct: 12 LFVGGIPYESGDDALRKFFAQFGEIREAVVIKDRVTKKSKGYGFVTMAT 60
>SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23)
Length = 2386
Score = 31.1 bits (67), Expect = 0.79
Identities = 17/41 (41%), Positives = 26/41 (63%)
Frame = +1
Query: 484 GLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFV 606
GLS TE + +F+K+GPV V V++ ++G+SR FV
Sbjct: 530 GLSEDVTENVLLELFNKFGPVKDV-VILRDESGKSRQSGFV 569
>SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24)
Length = 407
Score = 30.7 bits (66), Expect = 1.0
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +1
Query: 505 EQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFV 606
E+ + +F+ G V+ V+++ D KTG +GF +V
Sbjct: 69 EEPLRELFTTCGNVESVRLIRDRKTGIGKGFGYV 102
>SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)
Length = 298
Score = 30.7 bits (66), Expect = 1.0
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +1
Query: 478 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFV 606
V GL+ E+ ++ F +G + VQ+ +D T + RGF FV
Sbjct: 9 VGGLAEEVDEKVLHAAFIPFGDITDVQIPMDYTTSKHRGFGFV 51
>SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28)
Length = 419
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +1
Query: 472 LGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFV 606
L + GL TT+ + + KYG + + ++D T +G+ FV
Sbjct: 102 LYIRGLKANTTDDDLVRLCHKYGTIISTKAILDKDTNLCKGYGFV 146
>SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16)
Length = 842
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = +1
Query: 472 LGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVTLR 615
L V L+ + E H F K+G + + V+ D T RSRGF F+T +
Sbjct: 111 LSVIPLTQASAEGLRQH-FEKFGELKECVVMRDPVTKRSRGFGFLTFK 157
>SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/61 (27%), Positives = 30/61 (49%)
Frame = +1
Query: 424 LGDRVRLLENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCF 603
L D+ L V L E +I +FSK+G V +V++V + + G+ +G+ +
Sbjct: 157 LRDKFSKFPTSLDKHTLFVSNLPFDAKESEIEELFSKHGVVKQVRLVTN-RAGKPKGYGY 215
Query: 604 V 606
V
Sbjct: 216 V 216
>SB_37827| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 628
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +1
Query: 514 INHIFSKYGPVDKVQVVIDAKTGRSRGFCFV 606
INH S GP++ V++ D TG+ R F FV
Sbjct: 475 INH--SNAGPLENVRIPTDKNTGQQRSFGFV 503
>SB_877| Best HMM Match : RRM_1 (HMM E-Value=1e-15)
Length = 145
Score = 29.1 bits (62), Expect = 3.2
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +1
Query: 505 EQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVT 609
+ + +F YG ++ + + I +TG+S+GF +VT
Sbjct: 76 KSSLESVFGPYGAIEDLSI-IRTQTGKSKGFGYVT 109
>SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 514
Score = 28.7 bits (61), Expect = 4.2
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +1
Query: 508 QQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFV 606
+ + FSK G V V+++ D + RS+G ++
Sbjct: 160 RDLEEFFSKVGQVSDVRIISDRNSRRSKGIAYI 192
>SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 593
Score = 28.7 bits (61), Expect = 4.2
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +1
Query: 505 EQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFV 606
E+ I F +GP++K+ + D + +GF FV
Sbjct: 115 EEHIRTAFHPFGPINKIDLSWDPLNMKHKGFAFV 148
>SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07)
Length = 252
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 547 DKVQVVIDAKTGRSRGFCFVT 609
+ V ++ D +TGR RGF FVT
Sbjct: 123 EAVNIITDRETGRPRGFGFVT 143
>SB_40383| Best HMM Match : IQ (HMM E-Value=0.00047)
Length = 841
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +1
Query: 511 QINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVTLRTWKMLXLQ 639
Q+NHI +K PV +Q +I R R +R W + +Q
Sbjct: 229 QVNHIQAKNSPVLIIQKLIRGHLARQRVKYLQDMRIWAAVSIQ 271
>SB_3951| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 430
Score = 27.9 bits (59), Expect = 7.4
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = -3
Query: 215 LCPLDITAGFGTGSR-EPLRVLERLLSRSDIAMFVVNKRDKSEISRIFSINTLKRSTSIY 39
L PL I++ G E + L RLL R++I+ V DKS ++I SI IY
Sbjct: 180 LQPLTISSAVPVGEGLETMYDLFRLLERANISRVVSESFDKSLETQISSIKNPDEYVDIY 239
Query: 38 RRDR 27
R
Sbjct: 240 HYKR 243
>SB_2588| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1068
Score = 27.9 bits (59), Expect = 7.4
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = -2
Query: 228 GPASTMSSGHHRRFRYRLARTVASPRTTSLSIRHSDVRS**ERQKRNITN 79
GP++ + GH RR R R ++ + T+L +DV + E+Q R+ N
Sbjct: 648 GPSTEYNEGHTRRSRRRYRKSAKNESQTTL--EKNDVEALTEKQPRSEQN 695
>SB_25960| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 208
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +1
Query: 136 RERSRSRTRNGSREPVPKPAV 198
R RSRSR+R+ SR P+P V
Sbjct: 10 RSRSRSRSRSRSRSKSPRPKV 30
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,373,460
Number of Sequences: 59808
Number of extensions: 341743
Number of successful extensions: 845
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 845
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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