Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_P19
(640 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical pr... 67 9e-12
AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical ... 47 1e-05
AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical ... 47 1e-05
AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical ... 47 1e-05
Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical pr... 44 1e-04
Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical pr... 44 1e-04
Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical pr... 42 5e-04
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 41 7e-04
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 41 7e-04
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 41 7e-04
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 41 7e-04
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 41 7e-04
Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical pr... 41 9e-04
AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor pr... 40 0.001
AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical... 40 0.002
AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical ... 40 0.002
AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous t... 39 0.003
AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous t... 39 0.003
Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical pr... 39 0.003
AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural RNA-bi... 39 0.003
U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical pr... 38 0.005
Z77654-1|CAB01127.1| 114|Caenorhabditis elegans Hypothetical pr... 36 0.024
Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical pr... 36 0.032
Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical pr... 36 0.032
Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical pr... 36 0.032
Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical pr... 36 0.032
Z68297-5|CAC70081.1| 394|Caenorhabditis elegans Hypothetical pr... 35 0.056
Z50874-2|CAA90772.1| 357|Caenorhabditis elegans Hypothetical pr... 33 0.17
Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical p... 33 0.17
U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna b... 32 0.30
U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type ribon... 32 0.30
EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA... 32 0.30
EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA... 32 0.30
EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA... 32 0.30
EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA... 32 0.30
EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA... 32 0.30
Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical pr... 32 0.40
U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein (spl... 32 0.40
U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein (spl... 32 0.40
Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical pr... 31 0.53
Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical pr... 29 2.1
AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative RNA-... 29 2.1
AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical ... 29 2.1
Z83119-2|CAB05579.2| 608|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z73102-13|CAA97405.1| 836|Caenorhabditis elegans Hypothetical p... 29 3.7
AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna... 29 3.7
AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna... 29 3.7
AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna... 29 3.7
AL110501-1|CAB54509.1| 2129|Caenorhabditis elegans Hypothetical ... 27 8.6
AC006620-1|AAF39780.1| 754|Caenorhabditis elegans Hypothetical ... 27 8.6
>Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical
protein C18D11.4 protein.
Length = 309
Score = 67.3 bits (157), Expect = 9e-12
Identities = 27/53 (50%), Positives = 38/53 (71%)
Frame = +1
Query: 448 ENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFV 606
ENP PS+CLGVF LS YTTE+ + +F ++G ++K +V D +G SRGF F+
Sbjct: 70 ENPQPSKCLGVFNLSSYTTEKDLRDVFGEFGEINKCDLVYDRPSGNSRGFGFI 122
>AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical
protein H28G03.1b protein.
Length = 315
Score = 46.8 bits (106), Expect = 1e-05
Identities = 24/54 (44%), Positives = 34/54 (62%)
Frame = +1
Query: 448 ENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVT 609
++P R L + GLS TT++Q+ + FS++GPV V+ D T SRGF FVT
Sbjct: 43 DSPPQLRKLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVT 96
>AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical
protein H28G03.1c protein.
Length = 335
Score = 46.8 bits (106), Expect = 1e-05
Identities = 24/54 (44%), Positives = 34/54 (62%)
Frame = +1
Query: 448 ENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVT 609
++P R L + GLS TT++Q+ + FS++GPV V+ D T SRGF FVT
Sbjct: 63 DSPPQLRKLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVT 116
>AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical
protein H28G03.1a protein.
Length = 336
Score = 46.8 bits (106), Expect = 1e-05
Identities = 24/54 (44%), Positives = 34/54 (62%)
Frame = +1
Query: 448 ENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVT 609
++P R L + GLS TT++Q+ + FS++GPV V+ D T SRGF FVT
Sbjct: 64 DSPPQLRKLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVT 117
>Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical
protein T23F6.4 protein.
Length = 872
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/36 (52%), Positives = 23/36 (63%)
Frame = +1
Query: 499 TTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFV 606
T E + +F KYG V +VQVVID KTG +GF V
Sbjct: 290 TKEDDLQFLFKKYGEVSEVQVVIDKKTGACKGFAIV 325
Score = 32.3 bits (70), Expect = 0.30
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +1
Query: 502 TEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFV 606
TEQQ+ F KYG + + K G+ RGF FV
Sbjct: 15 TEQQLRKFFEKYGQISDASLKY-TKEGKFRGFAFV 48
>Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical
protein R09B3.2 protein.
Length = 83
Score = 43.6 bits (98), Expect = 1e-04
Identities = 16/36 (44%), Positives = 26/36 (72%)
Frame = +1
Query: 499 TTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFV 606
TTE+++ + FS G ++ V++V D +TGR RGF F+
Sbjct: 16 TTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFI 51
>Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical
protein R09B3.3 protein.
Length = 85
Score = 41.5 bits (93), Expect = 5e-04
Identities = 18/36 (50%), Positives = 24/36 (66%)
Frame = +1
Query: 499 TTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFV 606
TTE + + FS+ G V V++V D +TGR RGF FV
Sbjct: 15 TTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFV 50
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 41.1 bits (92), Expect = 7e-04
Identities = 20/54 (37%), Positives = 31/54 (57%)
Frame = +1
Query: 448 ENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVT 609
E+ ++ L V G+ TE + F+KYG V K ++++D T + RGF FVT
Sbjct: 108 ESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVT 161
Score = 38.7 bits (86), Expect = 0.003
Identities = 20/52 (38%), Positives = 30/52 (57%)
Frame = +1
Query: 454 PTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVT 609
P R + V GL+ TT+ + +S++G + + V+ D T RSRGF FVT
Sbjct: 19 PENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVT 70
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 41.1 bits (92), Expect = 7e-04
Identities = 20/54 (37%), Positives = 31/54 (57%)
Frame = +1
Query: 448 ENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVT 609
E+ ++ L V G+ TE + F+KYG V K ++++D T + RGF FVT
Sbjct: 70 ESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVT 123
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +1
Query: 514 INHIFSKYGPVDKVQVVIDAKTGRSRGFCFVT 609
+ +S++G + + V+ D T RSRGF FVT
Sbjct: 1 MREFYSQFGEITDIIVMRDPTTKRSRGFGFVT 32
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 41.1 bits (92), Expect = 7e-04
Identities = 20/54 (37%), Positives = 31/54 (57%)
Frame = +1
Query: 448 ENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVT 609
E+ ++ L V G+ TE + F+KYG V K ++++D T + RGF FVT
Sbjct: 70 ESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVT 123
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +1
Query: 514 INHIFSKYGPVDKVQVVIDAKTGRSRGFCFVT 609
+ +S++G + + V+ D T RSRGF FVT
Sbjct: 1 MREFYSQFGEITDIIVMRDPTTKRSRGFGFVT 32
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 41.1 bits (92), Expect = 7e-04
Identities = 20/54 (37%), Positives = 31/54 (57%)
Frame = +1
Query: 448 ENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVT 609
E+ ++ L V G+ TE + F+KYG V K ++++D T + RGF FVT
Sbjct: 108 ESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVT 161
Score = 38.7 bits (86), Expect = 0.003
Identities = 20/52 (38%), Positives = 30/52 (57%)
Frame = +1
Query: 454 PTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVT 609
P R + V GL+ TT+ + +S++G + + V+ D T RSRGF FVT
Sbjct: 19 PENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVT 70
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 41.1 bits (92), Expect = 7e-04
Identities = 20/54 (37%), Positives = 31/54 (57%)
Frame = +1
Query: 448 ENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVT 609
E+ ++ L V G+ TE + F+KYG V K ++++D T + RGF FVT
Sbjct: 108 ESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVT 161
Score = 38.7 bits (86), Expect = 0.003
Identities = 20/52 (38%), Positives = 30/52 (57%)
Frame = +1
Query: 454 PTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVT 609
P R + V GL+ TT+ + +S++G + + V+ D T RSRGF FVT
Sbjct: 19 PENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVT 70
>Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical
protein R06C1.4 protein.
Length = 84
Score = 40.7 bits (91), Expect = 9e-04
Identities = 17/35 (48%), Positives = 25/35 (71%)
Frame = +1
Query: 502 TEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFV 606
TE++I + F+ G V+ V++V D +TGR RGF FV
Sbjct: 18 TEEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFV 52
>AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor
protein 12 protein.
Length = 248
Score = 40.3 bits (90), Expect = 0.001
Identities = 15/46 (32%), Positives = 31/46 (67%)
Frame = +1
Query: 478 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVTLR 615
V GL +T+++ ++ F ++G +++ V+ D T +SRG+ FVT++
Sbjct: 39 VGGLPYHTSDKTLHEYFEQFGDIEEAVVITDRNTQKSRGYGFVTMK 84
>AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3c protein.
Length = 435
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/58 (29%), Positives = 31/58 (53%)
Frame = +1
Query: 433 RVRLLENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFV 606
++ L R L + ++ T + + FS G V V+++ D++TGRS+G C+V
Sbjct: 14 KLELTAEERDQRTLLIMQIARDTRPRDLEEFFSAVGAVRDVRIITDSRTGRSKGICYV 71
>AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3a protein.
Length = 580
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/58 (29%), Positives = 31/58 (53%)
Frame = +1
Query: 433 RVRLLENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFV 606
++ L R L + ++ T + + FS G V V+++ D++TGRS+G C+V
Sbjct: 159 KLELTAEERDQRTLLIMQIARDTRPRDLEEFFSAVGAVRDVRIITDSRTGRSKGICYV 216
>AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform a
protein.
Length = 305
Score = 39.1 bits (87), Expect = 0.003
Identities = 19/47 (40%), Positives = 26/47 (55%)
Frame = +1
Query: 478 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVTLRT 618
V G+S + ++ F++YG V + QV D GRSRGF FV T
Sbjct: 33 VGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTT 79
>AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform b
protein.
Length = 308
Score = 39.1 bits (87), Expect = 0.003
Identities = 19/47 (40%), Positives = 26/47 (55%)
Frame = +1
Query: 478 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVTLRT 618
V G+S + ++ F++YG V + QV D GRSRGF FV T
Sbjct: 33 VGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTT 79
>Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical
protein R10E9.1 protein.
Length = 320
Score = 38.7 bits (86), Expect = 0.003
Identities = 17/42 (40%), Positives = 26/42 (61%)
Frame = +1
Query: 484 GLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVT 609
GLS TT + + F ++G V++ V+ D T R+RGF F+T
Sbjct: 51 GLSWQTTAENLRDYFGRFGEVNECMVMRDPATKRARGFGFIT 92
Score = 37.1 bits (82), Expect = 0.011
Identities = 18/51 (35%), Positives = 28/51 (54%)
Frame = +1
Query: 457 TPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVT 609
T ++ + + GLS +T + + F YG V+ ++ D T R RGF FVT
Sbjct: 131 TKTKKVFIGGLSATSTLEDMKQYFETYGKVEDAMLMFDKATQRHRGFGFVT 181
>AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural
RNA-binding protein MSI-1 protein.
Length = 320
Score = 38.7 bits (86), Expect = 0.003
Identities = 17/42 (40%), Positives = 26/42 (61%)
Frame = +1
Query: 484 GLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVT 609
GLS TT + + F ++G V++ V+ D T R+RGF F+T
Sbjct: 51 GLSWQTTAENLRDYFGRFGEVNECMVMRDPATKRARGFGFIT 92
Score = 37.1 bits (82), Expect = 0.011
Identities = 18/51 (35%), Positives = 28/51 (54%)
Frame = +1
Query: 457 TPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVT 609
T ++ + + GLS +T + + F YG V+ ++ D T R RGF FVT
Sbjct: 131 TKTKKVFIGGLSATSTLEDMKQYFETYGKVEDAMLMFDKATQRHRGFGFVT 181
>U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical
protein C30B5.4 protein.
Length = 302
Score = 38.3 bits (85), Expect = 0.005
Identities = 16/41 (39%), Positives = 26/41 (63%)
Frame = +1
Query: 484 GLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFV 606
GLS +E + +FS+YG V + ++ D TG+S+GF F+
Sbjct: 44 GLSYALSEGDVIAVFSQYGEVMNINLIRDKDTGKSKGFAFL 84
>Z77654-1|CAB01127.1| 114|Caenorhabditis elegans Hypothetical
protein C50B8.1 protein.
Length = 114
Score = 35.9 bits (79), Expect = 0.024
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 499 TTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVT 609
T + Q+ H F +YG + V + D TG RGF +T
Sbjct: 36 TGKSQLEHYFKRYGSIQSVNMFYDPDTGLHRGFASIT 72
>Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical
protein F39H2.2a protein.
Length = 427
Score = 35.5 bits (78), Expect = 0.032
Identities = 15/49 (30%), Positives = 29/49 (59%)
Frame = +1
Query: 460 PSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFV 606
P L V L+ TT++ + IFS++G ++ ++V D ++G S + F+
Sbjct: 239 PENVLFVCKLNPVTTDEDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFI 287
>Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical
protein F56A8.6 protein.
Length = 336
Score = 35.5 bits (78), Expect = 0.032
Identities = 18/52 (34%), Positives = 29/52 (55%)
Frame = +1
Query: 451 NPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFV 606
N R + V +S +E I IFSK G V +++V D +TG+ +G+ F+
Sbjct: 13 NDRSQRSVFVGNISYDVSEDTIRSIFSKAGNVLSIKMVHDRETGKPKGYGFI 64
>Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical
protein F39H2.2a protein.
Length = 427
Score = 35.5 bits (78), Expect = 0.032
Identities = 15/49 (30%), Positives = 29/49 (59%)
Frame = +1
Query: 460 PSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFV 606
P L V L+ TT++ + IFS++G ++ ++V D ++G S + F+
Sbjct: 239 PENVLFVCKLNPVTTDEDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFI 287
>Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical
protein F39H2.2b protein.
Length = 358
Score = 35.5 bits (78), Expect = 0.032
Identities = 15/49 (30%), Positives = 29/49 (59%)
Frame = +1
Query: 460 PSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFV 606
P L V L+ TT++ + IFS++G ++ ++V D ++G S + F+
Sbjct: 170 PENVLFVCKLNPVTTDEDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFI 218
>Z68297-5|CAC70081.1| 394|Caenorhabditis elegans Hypothetical
protein F11A10.7 protein.
Length = 394
Score = 34.7 bits (76), Expect = 0.056
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +1
Query: 478 VFGLSLYTTEQQINHIFS-KYGPVDKVQVVIDAKTGRSRGFCFVTLR 615
V L TE + FS + GPV+ V++V D TG+ +GF FV +
Sbjct: 250 VGNLPFEITEDALITFFSAQIGPVEAVRIVRDKDTGKGKGFAFVNFK 296
>Z50874-2|CAA90772.1| 357|Caenorhabditis elegans Hypothetical
protein R10E4.2a protein.
Length = 357
Score = 33.1 bits (72), Expect = 0.17
Identities = 17/60 (28%), Positives = 28/60 (46%)
Frame = +1
Query: 427 GDRVRLLENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFV 606
GD+ P S L + GL T + + + SKYG + + ++D T +G+ FV
Sbjct: 68 GDQQHHDSTPLSSTNLYIRGLMPNTNDDLLREMCSKYGNIASTKAIMDKATNNCKGYGFV 127
>Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical
protein R07E5.14 protein.
Length = 142
Score = 33.1 bits (72), Expect = 0.17
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +1
Query: 502 TEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVTLRTWK 624
TE ++ FS+YG + + + +D +TG +G+ V T K
Sbjct: 67 TEDDVHDKFSEYGKIKNIHLNLDRRTGFLKGYALVEYETQK 107
>U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform a protein.
Length = 584
Score = 32.3 bits (70), Expect = 0.30
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +1
Query: 505 EQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVT 609
E +F KYG V ++ D T S+G CFVT
Sbjct: 68 ETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVT 102
>U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type
ribonucleoprotein protein.
Length = 584
Score = 32.3 bits (70), Expect = 0.30
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +1
Query: 505 EQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVT 609
E +F KYG V ++ D T S+G CFVT
Sbjct: 68 ETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVT 102
>EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA
binding protein variantE protein.
Length = 513
Score = 32.3 bits (70), Expect = 0.30
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +1
Query: 505 EQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVT 609
E +F KYG V ++ D T S+G CFVT
Sbjct: 68 ETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVT 102
>EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA
binding protein variantD protein.
Length = 327
Score = 32.3 bits (70), Expect = 0.30
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +1
Query: 505 EQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVT 609
E +F KYG V ++ D T S+G CFVT
Sbjct: 68 ETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVT 102
>EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA
binding protein variantC protein.
Length = 378
Score = 32.3 bits (70), Expect = 0.30
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +1
Query: 505 EQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVT 609
E +F KYG V ++ D T S+G CFVT
Sbjct: 68 ETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVT 102
>EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA
binding protein variantB protein.
Length = 193
Score = 32.3 bits (70), Expect = 0.30
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +1
Query: 505 EQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVT 609
E +F KYG V ++ D T S+G CFVT
Sbjct: 68 ETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVT 102
>EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA
binding protein variantA protein.
Length = 584
Score = 32.3 bits (70), Expect = 0.30
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +1
Query: 505 EQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVT 609
E +F KYG V ++ D T S+G CFVT
Sbjct: 68 ETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVT 102
>Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical
protein C07A4.1 protein.
Length = 360
Score = 31.9 bits (69), Expect = 0.40
Identities = 13/41 (31%), Positives = 26/41 (63%)
Frame = +1
Query: 487 LSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVT 609
LS + + + F+K+G V + +V+ D +T +S+G+ FV+
Sbjct: 142 LSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGYGFVS 182
>U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform b protein.
Length = 126
Score = 31.9 bits (69), Expect = 0.40
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +1
Query: 472 LGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFV 606
L + LS TT + F +YG + V + D + +S+GF FV
Sbjct: 21 LKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFV 65
>U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform a protein.
Length = 196
Score = 31.9 bits (69), Expect = 0.40
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +1
Query: 472 LGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFV 606
L + LS TT + F +YG + V + D + +S+GF FV
Sbjct: 21 LKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFV 65
>Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical
protein F22B5.2 protein.
Length = 256
Score = 31.5 bits (68), Expect = 0.53
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 505 EQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVTLRT 618
E ++ +F K G V ++ + D TG +GF FVT +
Sbjct: 189 EDELRDLFGKIGRVIRIFIARDKVTGLPKGFAFVTFES 226
>Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical
protein C17D12.2 protein.
Length = 514
Score = 29.5 bits (63), Expect = 2.1
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = +1
Query: 505 EQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVT 609
E+ + H+F ++G + + ++ D TG +G F+T
Sbjct: 42 EKDLRHLFEQFGKIYEFTILKDKYTGMHKGCAFLT 76
>AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative
RNA-binding protein protein.
Length = 514
Score = 29.5 bits (63), Expect = 2.1
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = +1
Query: 505 EQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVT 609
E+ + H+F ++G + + ++ D TG +G F+T
Sbjct: 42 EKDLRHLFEQFGKIYEFTILKDKYTGMHKGCAFLT 76
>AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical
protein F58D5.1 protein.
Length = 611
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +1
Query: 505 EQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVT 609
E + +F K G + +++++D +G SRG+ FVT
Sbjct: 213 EDTLVPLFEKSGKIWDLRLMMDPMSGASRGYAFVT 247
>Z83119-2|CAB05579.2| 608|Caenorhabditis elegans Hypothetical
protein R05H10.2 protein.
Length = 608
Score = 29.1 bits (62), Expect = 2.8
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = +1
Query: 448 ENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVTLRT 618
E+ T + + + LS T E+ I SK+G +D + +G S+G FV T
Sbjct: 257 ESITEGKVVFLRNLSYDTKEELIKEELSKFGKIDLAIICKYKDSGHSKGTAFVHFST 313
>Z73102-13|CAA97405.1| 836|Caenorhabditis elegans Hypothetical
protein B0035.12 protein.
Length = 836
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +1
Query: 502 TEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVTLRT 618
T+ ++ +FSK+G V V+ V K G+ +G FV T
Sbjct: 695 TDDELKALFSKFGTVTSVRRVTH-KDGKPKGIAFVDFDT 732
>AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform c protein.
Length = 346
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/43 (27%), Positives = 19/43 (44%)
Frame = +1
Query: 478 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFV 606
V +S E + F +GP+ + + D TG + F FV
Sbjct: 106 VGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFV 148
>AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform a protein.
Length = 339
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/43 (27%), Positives = 19/43 (44%)
Frame = +1
Query: 478 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFV 606
V +S E + F +GP+ + + D TG + F FV
Sbjct: 106 VGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFV 148
>AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform b protein.
Length = 749
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/43 (27%), Positives = 19/43 (44%)
Frame = +1
Query: 478 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFV 606
V +S E + F +GP+ + + D TG + F FV
Sbjct: 106 VGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFV 148
>AL110501-1|CAB54509.1| 2129|Caenorhabditis elegans Hypothetical
protein Y79H2A.3a protein.
Length = 2129
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +1
Query: 136 RERSRSRTRNGSREPVPKPAVMSR 207
R R++SR+R+ SRE P P SR
Sbjct: 1560 RSRTKSRSRSRSREAAPPPQQRSR 1583
>AC006620-1|AAF39780.1| 754|Caenorhabditis elegans Hypothetical
protein C51G7.3 protein.
Length = 754
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +1
Query: 136 RERSRSRTRNGSREPVPKPAVMSR 207
R R++SR+R+ SRE P P SR
Sbjct: 185 RSRTKSRSRSRSREAAPPPQQRSR 208
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,611,741
Number of Sequences: 27780
Number of extensions: 240873
Number of successful extensions: 681
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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