Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_P19
(640 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 48 4e-06
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 47 9e-06
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 47 1e-05
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 46 2e-05
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 46 2e-05
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 46 2e-05
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 44 6e-05
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 44 6e-05
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 44 6e-05
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 44 9e-05
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 44 9e-05
At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing ... 44 9e-05
At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing ... 44 9e-05
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 44 9e-05
At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing ... 44 9e-05
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 44 1e-04
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 43 1e-04
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 43 1e-04
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 43 1e-04
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 43 1e-04
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 43 1e-04
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 43 1e-04
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 43 2e-04
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ... 43 2e-04
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 42 3e-04
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 42 3e-04
At2g37510.1 68415.m04600 RNA-binding protein, putative similar t... 42 3e-04
At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ... 42 3e-04
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 42 5e-04
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 42 5e-04
At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonu... 42 5e-04
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 42 5e-04
At5g44200.1 68418.m05408 nuclear cap-binding protein, putative s... 41 6e-04
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 41 6e-04
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 41 8e-04
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 41 8e-04
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 41 8e-04
At2g21690.1 68415.m02580 RNA-binding protein, putative similar t... 41 8e-04
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu... 40 0.001
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 40 0.001
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 40 0.001
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 40 0.001
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 40 0.001
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 40 0.001
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 40 0.001
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu... 40 0.002
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 40 0.002
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 40 0.002
At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ... 40 0.002
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 40 0.002
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 40 0.002
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 39 0.002
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 39 0.002
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 39 0.002
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 39 0.002
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 39 0.002
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 39 0.003
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 39 0.003
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 39 0.003
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 39 0.003
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 38 0.004
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 38 0.006
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 38 0.006
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 38 0.006
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 38 0.006
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 38 0.006
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 38 0.006
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 38 0.007
At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ... 37 0.010
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 37 0.013
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 37 0.013
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 37 0.013
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 37 0.013
At1g71800.1 68414.m08298 cleavage stimulation factor, putative s... 37 0.013
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 36 0.017
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 36 0.017
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 36 0.017
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 36 0.017
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 36 0.017
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 36 0.017
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 36 0.017
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 36 0.023
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 36 0.023
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 36 0.023
At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing ... 36 0.030
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 36 0.030
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 36 0.030
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 36 0.030
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 36 0.030
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 36 0.030
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 35 0.040
At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) ide... 35 0.040
At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) ide... 35 0.040
At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) ide... 35 0.040
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 35 0.040
At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing ... 35 0.040
At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing ... 35 0.040
At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing ... 35 0.040
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 35 0.052
At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ... 35 0.052
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 35 0.052
At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing ... 35 0.052
At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing ... 35 0.052
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 34 0.069
At2g47310.1 68415.m05906 flowering time control protein-related ... 34 0.069
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 34 0.069
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 34 0.069
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 34 0.069
At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing ... 34 0.092
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 33 0.12
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 33 0.12
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 33 0.12
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 33 0.12
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 33 0.21
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 33 0.21
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 33 0.21
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 32 0.28
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 32 0.28
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 32 0.37
At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing ... 31 0.49
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 31 0.85
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 30 1.1
At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing ... 30 1.1
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 30 1.1
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 30 1.5
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 30 1.5
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 29 2.0
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 29 2.0
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 29 2.6
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 29 3.4
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 29 3.4
At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28... 28 4.5
At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing ... 28 4.5
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 28 4.5
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 28 4.5
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 28 4.5
At5g51300.2 68418.m06360 splicing factor-related contains simila... 28 6.0
At5g51300.1 68418.m06359 splicing factor-related contains simila... 28 6.0
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 28 6.0
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 28 6.0
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 28 6.0
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 28 6.0
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 28 6.0
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 27 7.9
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 27 7.9
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 48.4 bits (110), Expect = 4e-06
Identities = 22/44 (50%), Positives = 29/44 (65%)
Frame = +1
Query: 478 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVT 609
V G+S T E + FSKYG V ++++D +TGRSRGF FVT
Sbjct: 38 VGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVT 81
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 47.2 bits (107), Expect = 9e-06
Identities = 23/50 (46%), Positives = 33/50 (66%)
Frame = +1
Query: 466 RCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVTLR 615
RC V GL+ T EQ I F+++G V +++ID +TGRS+GF FVT +
Sbjct: 45 RCF-VGGLAWATDEQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFK 93
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 46.8 bits (106), Expect = 1e-05
Identities = 21/54 (38%), Positives = 35/54 (64%)
Frame = +1
Query: 457 TPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVTLRT 618
TPS + V GLS+ +TE+ + I +++GP+ V+V+ + +G SRGF F+ T
Sbjct: 295 TPSATVVVKGLSMKSTEEDLYQILAEWGPLHHVRVIREQNSGISRGFAFIDFPT 348
Score = 37.1 bits (82), Expect = 0.010
Identities = 19/49 (38%), Positives = 28/49 (57%)
Frame = +1
Query: 460 PSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFV 606
P+ L V GL E+ + + FSK+ P+ +++V D T SRGF FV
Sbjct: 456 PTHVLVVRGLDEDADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFV 504
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 46.0 bits (104), Expect = 2e-05
Identities = 23/46 (50%), Positives = 31/46 (67%)
Frame = +1
Query: 472 LGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVT 609
L + GLS TTEQ ++ FSK G V + Q+V+D + RS+GF FVT
Sbjct: 36 LFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVT 81
>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 347
Score = 46.0 bits (104), Expect = 2e-05
Identities = 22/63 (34%), Positives = 35/63 (55%)
Frame = +1
Query: 436 VRLLENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVTLR 615
V + R + V+GL TT + + +F YG +++ VVID TG+++GF FV +
Sbjct: 94 VEAADRDVTHRKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFK 153
Query: 616 TWK 624
T K
Sbjct: 154 TRK 156
>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 343
Score = 46.0 bits (104), Expect = 2e-05
Identities = 22/63 (34%), Positives = 35/63 (55%)
Frame = +1
Query: 436 VRLLENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVTLR 615
V + R + V+GL TT + + +F YG +++ VVID TG+++GF FV +
Sbjct: 94 VEAADRDVTHRKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFK 153
Query: 616 TWK 624
T K
Sbjct: 154 TRK 156
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 44.4 bits (100), Expect = 6e-05
Identities = 20/46 (43%), Positives = 29/46 (63%)
Frame = +1
Query: 472 LGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVT 609
L + G++ E + F+KYG V +V++D +TGRSRGF FVT
Sbjct: 42 LFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVT 87
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 44.4 bits (100), Expect = 6e-05
Identities = 19/44 (43%), Positives = 28/44 (63%)
Frame = +1
Query: 478 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVT 609
V GLS TE+Q+ F +YG + + Q+++ TGR RGF F+T
Sbjct: 16 VGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFIT 59
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 44.4 bits (100), Expect = 6e-05
Identities = 19/44 (43%), Positives = 28/44 (63%)
Frame = +1
Query: 478 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVT 609
V GLS TE+Q+ F +YG + + Q+++ TGR RGF F+T
Sbjct: 16 VGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFIT 59
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 44.0 bits (99), Expect = 9e-05
Identities = 23/54 (42%), Positives = 30/54 (55%)
Frame = +1
Query: 457 TPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVTLRT 618
+P L V LS Q+ +F G V+ V+V+ D TGRSRGF FVT+ T
Sbjct: 96 SPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMST 149
Score = 36.7 bits (81), Expect = 0.013
Identities = 18/47 (38%), Positives = 29/47 (61%)
Frame = +1
Query: 472 LGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVTL 612
L V LS + + ++F++ G V + +V+ D +GRS+GF FVTL
Sbjct: 251 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTL 297
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 44.0 bits (99), Expect = 9e-05
Identities = 23/54 (42%), Positives = 30/54 (55%)
Frame = +1
Query: 457 TPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVTLRT 618
+P L V LS Q+ +F G V+ V+V+ D TGRSRGF FVT+ T
Sbjct: 96 SPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMST 149
Score = 36.7 bits (81), Expect = 0.013
Identities = 18/47 (38%), Positives = 29/47 (61%)
Frame = +1
Query: 472 LGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVTL 612
L V LS + + ++F++ G V + +V+ D +GRS+GF FVTL
Sbjct: 259 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTL 305
>At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 44.0 bits (99), Expect = 9e-05
Identities = 22/61 (36%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Frame = +1
Query: 430 DRVRLL-ENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFV 606
+ VRL ++ R L + GL+ TT + + +FS YG +++ V++D TG+S+G+ FV
Sbjct: 62 ESVRLTADSDISQRKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFV 121
Query: 607 T 609
T
Sbjct: 122 T 122
Score = 30.3 bits (65), Expect = 1.1
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +1
Query: 505 EQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVTLRT 618
++ +NH F YG V++ + D TG+SRGF +T
Sbjct: 181 DRLLNH-FMAYGDVEEGPLGFDKVTGKSRGFALFVYKT 217
>At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 44.0 bits (99), Expect = 9e-05
Identities = 22/61 (36%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Frame = +1
Query: 430 DRVRLL-ENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFV 606
+ VRL ++ R L + GL+ TT + + +FS YG +++ V++D TG+S+G+ FV
Sbjct: 62 ESVRLTADSDISQRKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFV 121
Query: 607 T 609
T
Sbjct: 122 T 122
Score = 30.3 bits (65), Expect = 1.1
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +1
Query: 505 EQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVTLRT 618
++ +NH F YG V++ + D TG+SRGF +T
Sbjct: 181 DRLLNH-FMAYGDVEEGPLGFDKVTGKSRGFALFVYKT 217
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 44.0 bits (99), Expect = 9e-05
Identities = 22/50 (44%), Positives = 30/50 (60%)
Frame = +1
Query: 457 TPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFV 606
+PS L + GLS EQ + FS +G V +V++ D +GRSRGF FV
Sbjct: 38 SPSSKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFV 87
>At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing
protein similar to GB:L02953 from [Xenopus laevis]
(Nucleic Acids Res. 21, 999-1006 (1993)); contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 369
Score = 44.0 bits (99), Expect = 9e-05
Identities = 23/64 (35%), Positives = 37/64 (57%)
Frame = +1
Query: 427 GDRVRLLENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFV 606
GD+ ++ + +R + V GL E ++ + F YG + + Q++ D TGRSRGF FV
Sbjct: 144 GDKDTDIKAVSKTRKIFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFV 203
Query: 607 TLRT 618
T +T
Sbjct: 204 TFQT 207
Score = 34.7 bits (76), Expect = 0.052
Identities = 19/46 (41%), Positives = 25/46 (54%)
Frame = +1
Query: 472 LGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVT 609
L V G+S TT + + F K+G V ++ D TG RGF FVT
Sbjct: 68 LFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVT 113
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 43.6 bits (98), Expect = 1e-04
Identities = 18/46 (39%), Positives = 31/46 (67%)
Frame = +1
Query: 472 LGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVT 609
L V LS YTT+Q + +FS +G + + +++ D++T R +GF F+T
Sbjct: 9 LFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFIT 54
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 43.2 bits (97), Expect = 1e-04
Identities = 21/55 (38%), Positives = 34/55 (61%)
Frame = +1
Query: 466 RCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVTLRTWKML 630
RC V GL+ T ++ + FS++G V +++ D ++GRSRGF FVT + K +
Sbjct: 7 RCF-VGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAM 60
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 43.2 bits (97), Expect = 1e-04
Identities = 21/55 (38%), Positives = 34/55 (61%)
Frame = +1
Query: 466 RCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVTLRTWKML 630
RC V GL+ T ++ + FS++G V +++ D ++GRSRGF FVT + K +
Sbjct: 7 RCF-VGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAM 60
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 43.2 bits (97), Expect = 1e-04
Identities = 21/55 (38%), Positives = 34/55 (61%)
Frame = +1
Query: 466 RCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVTLRTWKML 630
RC V GL+ T ++ + FS++G V +++ D ++GRSRGF FVT + K +
Sbjct: 7 RCF-VGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAM 60
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 43.2 bits (97), Expect = 1e-04
Identities = 21/55 (38%), Positives = 34/55 (61%)
Frame = +1
Query: 466 RCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVTLRTWKML 630
RC V GL+ T ++ + FS++G V +++ D ++GRSRGF FVT + K +
Sbjct: 7 RCF-VGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAM 60
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 43.2 bits (97), Expect = 1e-04
Identities = 22/55 (40%), Positives = 34/55 (61%)
Frame = +1
Query: 466 RCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVTLRTWKML 630
RC V GL+ T ++ + F++YG V +++ D +TGRSRGF FVT + K +
Sbjct: 9 RCF-VGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAM 62
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 43.2 bits (97), Expect = 1e-04
Identities = 22/55 (40%), Positives = 34/55 (61%)
Frame = +1
Query: 466 RCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVTLRTWKML 630
RC V GL+ T ++ + F++YG V +++ D +TGRSRGF FVT + K +
Sbjct: 9 RCF-VGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAM 62
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 42.7 bits (96), Expect = 2e-04
Identities = 23/56 (41%), Positives = 34/56 (60%)
Frame = +1
Query: 442 LLENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVT 609
LL + + S L V G+S +TE+ + FS+YG V KV V++D R +GF +VT
Sbjct: 13 LLFSRSFSSTLFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVT 68
>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 382
Score = 42.7 bits (96), Expect = 2e-04
Identities = 21/59 (35%), Positives = 32/59 (54%)
Frame = +1
Query: 448 ENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVTLRTWK 624
+ + R + V GL TT + + F YG + + VV+D TGR++GF FV +T K
Sbjct: 157 DRDSSQRNIFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKTRK 215
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 42.3 bits (95), Expect = 3e-04
Identities = 18/44 (40%), Positives = 29/44 (65%)
Frame = +1
Query: 478 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVT 609
V GLS T++ + FS++G + Q++++ TGRSRGF F+T
Sbjct: 11 VGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFIT 54
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/48 (41%), Positives = 32/48 (66%)
Frame = +1
Query: 466 RCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVT 609
RC + GL+ T+++ + F KYG + + +VV+D +GRSRGF F+T
Sbjct: 8 RCF-IGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFIT 54
>At2g37510.1 68415.m04600 RNA-binding protein, putative similar to
SP|P10979 Glycine-rich RNA-binding, abscisic
acid-inducible protein {Zea mays}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 142
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/49 (40%), Positives = 30/49 (61%)
Frame = +1
Query: 472 LGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVTLRT 618
L V GLS TT +++ F+ +G + +V+ D +GRS+GF FVT T
Sbjct: 36 LFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYAT 84
>At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM); contains Pfam profile PF00096:
Zinc finger, C2H2 type
Length = 613
Score = 41.9 bits (94), Expect = 3e-04
Identities = 19/53 (35%), Positives = 30/53 (56%)
Frame = +1
Query: 466 RCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVTLRTWK 624
R + V G TT++ + F YG +++ VV+D TGR +G+ FV +T K
Sbjct: 408 RNIFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRK 460
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 41.5 bits (93), Expect = 5e-04
Identities = 20/46 (43%), Positives = 28/46 (60%)
Frame = +1
Query: 472 LGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVT 609
L V GLS T + + F+ +G V + V+ D +TGRSRGF FV+
Sbjct: 37 LFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVS 82
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 41.5 bits (93), Expect = 5e-04
Identities = 20/46 (43%), Positives = 28/46 (60%)
Frame = +1
Query: 472 LGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVT 609
L V GLS T + + F+ +G V + V+ D +TGRSRGF FV+
Sbjct: 37 LFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVS 82
>At1g07350.2 68414.m00784 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 129
Score = 41.5 bits (93), Expect = 5e-04
Identities = 21/53 (39%), Positives = 31/53 (58%)
Frame = +1
Query: 460 PSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVTLRT 618
P L V GLS TE+ + F+K G V V +V+D T SRGF F+++++
Sbjct: 43 PGNSLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKS 95
>At1g07350.1 68414.m00783 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 382
Score = 41.5 bits (93), Expect = 5e-04
Identities = 21/53 (39%), Positives = 31/53 (58%)
Frame = +1
Query: 460 PSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVTLRT 618
P L V GLS TE+ + F+K G V V +V+D T SRGF F+++++
Sbjct: 73 PGNSLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKS 125
>At5g44200.1 68418.m05408 nuclear cap-binding protein, putative
similar to SP|P52298 20 kDa nuclear cap binding protein
(CBP20) (NCBP interacting protein 1) {Homo sapiens};
non-consensus AT donor splice site at exon 4, AC
acceptor splice site at exon 5; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 257
Score = 41.1 bits (92), Expect = 6e-04
Identities = 17/40 (42%), Positives = 26/40 (65%)
Frame = +1
Query: 487 LSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFV 606
+S YTTE+Q+ +FS+ G + K+ + +D T GFCFV
Sbjct: 41 VSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFV 80
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 41.1 bits (92), Expect = 6e-04
Identities = 17/55 (30%), Positives = 34/55 (61%)
Frame = +1
Query: 454 PTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVTLRT 618
P ++ L + GLS YT+E+ + F +G + +V++++D + RS+G+ F+ T
Sbjct: 278 PVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTT 332
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 40.7 bits (91), Expect = 8e-04
Identities = 19/47 (40%), Positives = 29/47 (61%)
Frame = +1
Query: 466 RCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFV 606
R L V L +E Q+ IF +GPV+ VQ+ +D +TG+ +GF F+
Sbjct: 265 RKLYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFI 311
Score = 32.3 bits (70), Expect = 0.28
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = +1
Query: 466 RCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFV 606
R + + + L TE+ + FSK G V V++++D + RS+G ++
Sbjct: 168 RTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYI 214
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 40.7 bits (91), Expect = 8e-04
Identities = 20/43 (46%), Positives = 27/43 (62%)
Frame = +1
Query: 478 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFV 606
V G+ TE ++ F+KYG V + QV+ D +T RSRGF FV
Sbjct: 113 VGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFV 155
Score = 35.1 bits (77), Expect = 0.040
Identities = 17/42 (40%), Positives = 22/42 (52%)
Frame = +1
Query: 484 GLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVT 609
GL TT N F KYG + ++ D TG+ RGF F+T
Sbjct: 25 GLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFIT 66
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 40.7 bits (91), Expect = 8e-04
Identities = 20/43 (46%), Positives = 27/43 (62%)
Frame = +1
Query: 478 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFV 606
V G+ TE ++ F+KYG V + QV+ D +T RSRGF FV
Sbjct: 113 VGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFV 155
Score = 35.1 bits (77), Expect = 0.040
Identities = 17/42 (40%), Positives = 22/42 (52%)
Frame = +1
Query: 484 GLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVT 609
GL TT N F KYG + ++ D TG+ RGF F+T
Sbjct: 25 GLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFIT 66
>At2g21690.1 68415.m02580 RNA-binding protein, putative similar to
Glycine-rich RNA-binding protein from {Sinapis alba}
SP|P49311, {Brassica napus} SP|Q05966, {Arabidopsis
thaliana} SP|Q03251; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 117
Score = 40.7 bits (91), Expect = 8e-04
Identities = 21/51 (41%), Positives = 29/51 (56%)
Frame = +1
Query: 478 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVTLRTWKML 630
V GL T E+ + IFSK+G V +++ D TG+SR F FVT K +
Sbjct: 11 VRGLDQDTDEKDLTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTFEEEKSM 61
>At4g35785.1 68417.m05082 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 140
Score = 40.3 bits (90), Expect = 0.001
Identities = 24/64 (37%), Positives = 34/64 (53%)
Frame = +1
Query: 433 RVRLLENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVTL 612
R R E P L V GLS T++ + F+K G V +V++ +T SRGF FVT+
Sbjct: 60 RSRGSEVENPGTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTM 119
Query: 613 RTWK 624
+ K
Sbjct: 120 SSLK 123
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/34 (50%), Positives = 26/34 (76%)
Frame = +1
Query: 511 QINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVTL 612
++ +FS++G V + +VV D +TGRSRGF FVT+
Sbjct: 259 RLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTM 292
Score = 33.5 bits (73), Expect = 0.12
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = +1
Query: 448 ENPTPSRCLGVF--GLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVTL 612
E P PS +F L+ Q + +F + G V+ +V+ + +T +SRGF FVT+
Sbjct: 142 EFPEPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTM 198
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/45 (42%), Positives = 28/45 (62%)
Frame = +1
Query: 472 LGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFV 606
L + GLS T + + F+ +G V +V++D +TGRSRGF FV
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFV 81
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/45 (42%), Positives = 28/45 (62%)
Frame = +1
Query: 472 LGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFV 606
L + GLS T + + F+ +G V +V++D +TGRSRGF FV
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFV 81
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 39.9 bits (89), Expect = 0.001
Identities = 22/53 (41%), Positives = 30/53 (56%)
Frame = +1
Query: 460 PSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVTLRT 618
PS L V GLS TT + + F+++G V +VV D +G S+GF FV T
Sbjct: 54 PSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYAT 106
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 39.9 bits (89), Expect = 0.001
Identities = 22/55 (40%), Positives = 30/55 (54%)
Frame = +1
Query: 460 PSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVTLRTWK 624
P L V LS +TTE + + SKYG + +++V TG SRG+ FV T K
Sbjct: 62 PYCTLFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYETEK 116
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 39.9 bits (89), Expect = 0.001
Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = +1
Query: 451 NPTPSRCLGVF--GLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVT 609
N SR +F GLS TTE++ F ++G V V+ D T R RGF FVT
Sbjct: 113 NGVTSRTKKIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVT 167
Score = 35.9 bits (79), Expect = 0.023
Identities = 18/45 (40%), Positives = 27/45 (60%)
Frame = +1
Query: 472 LGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFV 606
L V G++ T+E+ + FS+YG V + V + TG+ RGF FV
Sbjct: 8 LFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFV 52
>At4g35785.2 68417.m05083 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 141
Score = 39.5 bits (88), Expect = 0.002
Identities = 22/59 (37%), Positives = 32/59 (54%)
Frame = +1
Query: 448 ENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVTLRTWK 624
E P L V GLS T++ + F+K G V +V++ +T SRGF FVT+ + K
Sbjct: 66 EVENPGTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLK 124
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/43 (48%), Positives = 25/43 (58%)
Frame = +1
Query: 478 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFV 606
V LS T E + +F +G V +V V ID KTG SRGF FV
Sbjct: 217 VTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFV 259
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/46 (39%), Positives = 27/46 (58%)
Frame = +1
Query: 478 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVTLR 615
V GL+ T + + F +YG + + V+ D TGRS+G+ FVT R
Sbjct: 28 VGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFR 73
>At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 310
Score = 39.5 bits (88), Expect = 0.002
Identities = 23/55 (41%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Frame = +1
Query: 445 LENPTPSRCLGVFGLSLYTTEQQINHIFS-KYGPVDKVQVVIDAKTGRSRGFCFV 606
LEN P + V LS ++ ++ FS KY V +VV+DA TGRS+G+ FV
Sbjct: 190 LENNGPDLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFV 244
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 39.5 bits (88), Expect = 0.002
Identities = 23/55 (41%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Frame = +1
Query: 445 LENPTPSRCLGVFGLSLYTTEQQINHIFS-KYGPVDKVQVVIDAKTGRSRGFCFV 606
LEN P + V LS ++ ++ FS KY V +VV+DA TGRS+G+ FV
Sbjct: 190 LENNGPDLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFV 244
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/46 (39%), Positives = 27/46 (58%)
Frame = +1
Query: 478 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVTLR 615
V GL+ T + + F +YG + + V+ D TGRS+G+ FVT R
Sbjct: 28 VGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFR 73
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 39.1 bits (87), Expect = 0.002
Identities = 18/45 (40%), Positives = 28/45 (62%)
Frame = +1
Query: 472 LGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFV 606
L + G+S T E+++ FS YG V + ++ D TGR+RGF F+
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFI 52
Score = 35.9 bits (79), Expect = 0.023
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +1
Query: 478 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVT 609
V GL TE++ + F ++G + V V+ D T R RGF F+T
Sbjct: 114 VGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFIT 157
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 39.1 bits (87), Expect = 0.002
Identities = 18/45 (40%), Positives = 28/45 (62%)
Frame = +1
Query: 472 LGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFV 606
L + G+S T E+++ FS YG V + ++ D TGR+RGF F+
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFI 52
Score = 35.9 bits (79), Expect = 0.023
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +1
Query: 478 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVT 609
V GL TE++ + F ++G + V V+ D T R RGF F+T
Sbjct: 114 VGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFIT 157
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 39.1 bits (87), Expect = 0.002
Identities = 18/45 (40%), Positives = 28/45 (62%)
Frame = +1
Query: 472 LGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFV 606
L + G+S T E+++ FS YG V + ++ D TGR+RGF F+
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFI 52
Score = 35.9 bits (79), Expect = 0.023
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +1
Query: 478 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVT 609
V GL TE++ + F ++G + V V+ D T R RGF F+T
Sbjct: 114 VGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFIT 157
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 39.1 bits (87), Expect = 0.002
Identities = 20/40 (50%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Frame = +1
Query: 496 YT-TEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVTL 612
YT T +++ IF + G V VQ+V D T RSRGF FVT+
Sbjct: 125 YTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTM 164
Score = 27.9 bits (59), Expect = 6.0
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +1
Query: 502 TEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVTLRT 618
T Q + F V +V+ + TGRSRGF F++ +
Sbjct: 231 TSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFES 269
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 39.1 bits (87), Expect = 0.002
Identities = 16/39 (41%), Positives = 27/39 (69%)
Frame = +1
Query: 502 TEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVTLRT 618
T +Q+ + ++G V+KVQV+ D +GRSR F F T+++
Sbjct: 88 TNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKS 126
Score = 27.5 bits (58), Expect = 7.9
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +1
Query: 478 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVT 609
V L+ T++ + ++FS+ G V +V T +S GF FVT
Sbjct: 181 VGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVT 224
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 38.7 bits (86), Expect = 0.003
Identities = 17/45 (37%), Positives = 28/45 (62%)
Frame = +1
Query: 472 LGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFV 606
L + G+S T E+++ F KYG + + ++ D TGR+RGF F+
Sbjct: 17 LFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFI 61
Score = 34.7 bits (76), Expect = 0.052
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = +1
Query: 478 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVT 609
V GL TE + + F ++G + V V+ D T R RGF F+T
Sbjct: 126 VGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFIT 169
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 38.7 bits (86), Expect = 0.003
Identities = 18/45 (40%), Positives = 28/45 (62%)
Frame = +1
Query: 472 LGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFV 606
L + G+S T E+++ FS +G V + ++ D TGR+RGF FV
Sbjct: 8 LFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFV 52
Score = 34.7 bits (76), Expect = 0.052
Identities = 19/52 (36%), Positives = 25/52 (48%)
Frame = +1
Query: 454 PTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVT 609
P +R + V GL TE F ++G V V+ D T R RGF F+T
Sbjct: 104 PGRTRKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFIT 155
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 38.7 bits (86), Expect = 0.003
Identities = 18/45 (40%), Positives = 28/45 (62%)
Frame = +1
Query: 472 LGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFV 606
L + G+S T E+++ FS +G V + ++ D TGR+RGF FV
Sbjct: 8 LFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFV 52
Score = 34.7 bits (76), Expect = 0.052
Identities = 19/52 (36%), Positives = 25/52 (48%)
Frame = +1
Query: 454 PTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVT 609
P +R + V GL TE F ++G V V+ D T R RGF F+T
Sbjct: 104 PGRTRKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFIT 155
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 38.7 bits (86), Expect = 0.003
Identities = 20/47 (42%), Positives = 26/47 (55%)
Frame = +1
Query: 472 LGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVTL 612
L V L Q+ +F G V+ V+V+ D TGRSRGF FVT+
Sbjct: 93 LFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTM 139
Score = 35.1 bits (77), Expect = 0.040
Identities = 17/44 (38%), Positives = 26/44 (59%)
Frame = +1
Query: 478 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVT 609
V LS + + +FS+ G V + +V+ D +GRS+GF FVT
Sbjct: 208 VGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVT 251
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 38.3 bits (85), Expect = 0.004
Identities = 17/42 (40%), Positives = 24/42 (57%)
Frame = +1
Query: 478 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCF 603
V GL Y TE QI + +GP+ +V D +TG S+G+ F
Sbjct: 379 VGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAF 420
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 37.9 bits (84), Expect = 0.006
Identities = 18/43 (41%), Positives = 25/43 (58%)
Frame = +1
Query: 478 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFV 606
V ++ TT + +F+KYG V V + D +TG SRGF FV
Sbjct: 20 VLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFV 62
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 37.9 bits (84), Expect = 0.006
Identities = 18/43 (41%), Positives = 25/43 (58%)
Frame = +1
Query: 478 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFV 606
V ++ TT + +F+KYG V V + D +TG SRGF FV
Sbjct: 20 VLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFV 62
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 37.9 bits (84), Expect = 0.006
Identities = 20/45 (44%), Positives = 26/45 (57%)
Frame = +1
Query: 472 LGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFV 606
L V G+S T E ++ F+ YG V + V+ D TGR RGF FV
Sbjct: 8 LFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFV 52
Score = 37.9 bits (84), Expect = 0.006
Identities = 18/44 (40%), Positives = 24/44 (54%)
Frame = +1
Query: 478 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVT 609
V GL T+++ F YGPV V ++ D T R RGF FV+
Sbjct: 114 VGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVS 157
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 37.9 bits (84), Expect = 0.006
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = +1
Query: 451 NPTPSRCLGVF--GLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVTLR 615
N T ++ +F GL+ T + F ++G + + V+ D TGRS+G+ FVT +
Sbjct: 15 NTTDTKLTKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFK 71
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 37.9 bits (84), Expect = 0.006
Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Frame = +1
Query: 445 LENPTPSRCLGVFGLSLYTTEQQINHIFS-KYGPVDKVQVVIDAKTGRSRGFCFV 606
LEN P + V L+ ++ ++ FS KY V +VV+DA TGRS+G+ FV
Sbjct: 192 LENNGPDLSIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFV 246
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 37.9 bits (84), Expect = 0.006
Identities = 21/51 (41%), Positives = 29/51 (56%)
Frame = +1
Query: 457 TPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVT 609
TPS+ V GLS T + + F +G + VV+D ++G SRGF FVT
Sbjct: 34 TPSKIF-VGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVT 83
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 37.5 bits (83), Expect = 0.007
Identities = 19/44 (43%), Positives = 25/44 (56%)
Frame = +1
Query: 478 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVT 609
V GL+ TT + F KYG + ++ D KTG+ RGF FVT
Sbjct: 46 VGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVT 89
Score = 37.1 bits (82), Expect = 0.010
Identities = 19/66 (28%), Positives = 34/66 (51%)
Frame = +1
Query: 433 RVRLLENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVTL 612
R + N ++ + V G+ + + F ++G + + Q++ D TGRSRGF FVT
Sbjct: 119 RGSMSSNDFKTKKIFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTY 178
Query: 613 RTWKML 630
+ M+
Sbjct: 179 ESEDMV 184
>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
SP|P19684 33 kDa ribonucleoprotein, chloroplast
precursor {Nicotiana sylvestris}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 308
Score = 37.1 bits (82), Expect = 0.010
Identities = 20/55 (36%), Positives = 31/55 (56%)
Frame = +1
Query: 448 ENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVTL 612
+N R L VF L + I+ +F + G V+ V++ I K G++RGF FVT+
Sbjct: 89 QNSNLKRKLFVFNLPWSMSVNDISELFGQCGTVNNVEI-IRQKDGKNRGFAFVTM 142
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 36.7 bits (81), Expect = 0.013
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +1
Query: 511 QINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVTL 612
++ +FS++G V +VV D +TGRSRGF FV +
Sbjct: 222 RLERLFSEHGKVVDARVVSDRETGRSRGFGFVQM 255
Score = 31.9 bits (69), Expect = 0.37
Identities = 21/63 (33%), Positives = 32/63 (50%)
Frame = +1
Query: 430 DRVRLLENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVT 609
D V E P ++ L V L Q + +F + G V+ +V+ + T +SRGF FVT
Sbjct: 102 DGVGFPEPPEEAK-LFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVT 160
Query: 610 LRT 618
+ T
Sbjct: 161 MST 163
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 36.7 bits (81), Expect = 0.013
Identities = 15/46 (32%), Positives = 27/46 (58%)
Frame = +1
Query: 478 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVTLR 615
V GL+ T ++ F ++G + + ++ D TG+S+G+ FVT R
Sbjct: 21 VGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFR 66
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 36.7 bits (81), Expect = 0.013
Identities = 15/46 (32%), Positives = 27/46 (58%)
Frame = +1
Query: 478 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVTLR 615
V GL+ T ++ F ++G + + ++ D TG+S+G+ FVT R
Sbjct: 21 VGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFR 66
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 36.7 bits (81), Expect = 0.013
Identities = 18/53 (33%), Positives = 27/53 (50%)
Frame = +1
Query: 460 PSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVTLRT 618
P L V GLS TTE + F ++G + + +V+D R +GF F+ T
Sbjct: 75 PKTKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYET 127
>At1g71800.1 68414.m08298 cleavage stimulation factor, putative
similar to cleavage stimulation factor 64 kilodalton
subunit GB:AAD47839 GI:5713194 from [Drosophila
melanogaster], SP|P33240 Cleavage stimulation factor, 64
kDa subunit {Homo sapiens}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 461
Score = 36.7 bits (81), Expect = 0.013
Identities = 16/46 (34%), Positives = 27/46 (58%)
Frame = +1
Query: 466 RCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCF 603
RC+ V + TE+Q+ I + GPV ++V D +TG+ +G+ F
Sbjct: 9 RCVFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGF 54
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 36.3 bits (80), Expect = 0.017
Identities = 20/65 (30%), Positives = 36/65 (55%)
Frame = +1
Query: 424 LGDRVRLLENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCF 603
+ R RL+ T + C+ GLS YTT+Q + +F+ + +++ D +T R +GF F
Sbjct: 58 ISKRRRLIGGKTLT-CVSNSGLSAYTTDQSLRQLFAPF-----ARLIKDQQTQRPKGFGF 111
Query: 604 VTLRT 618
+T +
Sbjct: 112 ITFES 116
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 36.3 bits (80), Expect = 0.017
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = +1
Query: 472 LGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFV 606
L V L TE+++ FS +G + +V +V+D +T RSRG ++
Sbjct: 263 LFVRNLPYTATEEELMEHFSTFGKISEVHLVLDKETKRSRGIAYI 307
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 36.3 bits (80), Expect = 0.017
Identities = 16/41 (39%), Positives = 26/41 (63%)
Frame = +1
Query: 502 TEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVTLRTWK 624
TE++I F ++G V +V ++ D +TG+ +G CFV T K
Sbjct: 132 TEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSK 172
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 36.3 bits (80), Expect = 0.017
Identities = 16/41 (39%), Positives = 26/41 (63%)
Frame = +1
Query: 502 TEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVTLRTWK 624
TE++I F ++G V +V ++ D +TG+ +G CFV T K
Sbjct: 132 TEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSK 172
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 36.3 bits (80), Expect = 0.017
Identities = 21/44 (47%), Positives = 24/44 (54%)
Frame = +1
Query: 478 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVT 609
V LS TT+ + FS YG V V+ D T RSRGF FVT
Sbjct: 7 VGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVT 50
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 36.3 bits (80), Expect = 0.017
Identities = 16/43 (37%), Positives = 26/43 (60%)
Frame = +1
Query: 478 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFV 606
V G+ TE + +FS+YG + V ++ D TG+S+GF F+
Sbjct: 40 VGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFL 82
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 36.3 bits (80), Expect = 0.017
Identities = 15/46 (32%), Positives = 27/46 (58%)
Frame = +1
Query: 478 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVTLR 615
V GL+ T ++ F ++G + + ++ D TG+S+G+ FVT R
Sbjct: 21 VGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFR 66
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 35.9 bits (79), Expect = 0.023
Identities = 17/45 (37%), Positives = 27/45 (60%)
Frame = +1
Query: 472 LGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFV 606
L + G+S T+E ++ F +G V + ++ D TGR+RGF FV
Sbjct: 8 LFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFV 52
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 35.9 bits (79), Expect = 0.023
Identities = 17/45 (37%), Positives = 27/45 (60%)
Frame = +1
Query: 472 LGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFV 606
L + G+S T+E ++ F +G V + ++ D TGR+RGF FV
Sbjct: 8 LFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFV 52
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 35.9 bits (79), Expect = 0.023
Identities = 19/45 (42%), Positives = 26/45 (57%)
Frame = +1
Query: 472 LGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFV 606
L + G+S T E + FS +G V +V V+ + TGR RGF FV
Sbjct: 8 LFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFV 52
Score = 35.5 bits (78), Expect = 0.030
Identities = 18/44 (40%), Positives = 22/44 (50%)
Frame = +1
Query: 478 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVT 609
V GL T + F YGPV ++ID T R RGF FV+
Sbjct: 114 VGGLPPALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVS 157
>At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 100
Score = 35.5 bits (78), Expect = 0.030
Identities = 18/46 (39%), Positives = 25/46 (54%)
Frame = +1
Query: 478 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVTLR 615
V GL T + + F ++G + +VV D T RS+GF FVT R
Sbjct: 13 VAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFR 58
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 35.5 bits (78), Expect = 0.030
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +1
Query: 478 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCF 603
V GL Y TE Q+ + +G + +V D +TG S+G+ F
Sbjct: 363 VGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAF 404
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 35.5 bits (78), Expect = 0.030
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +1
Query: 478 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCF 603
V GL Y TE Q+ + +G + +V D +TG S+G+ F
Sbjct: 363 VGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAF 404
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 35.5 bits (78), Expect = 0.030
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +1
Query: 478 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCF 603
V GL Y TE Q+ + +G + +V D +TG S+G+ F
Sbjct: 363 VGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAF 404
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 35.5 bits (78), Expect = 0.030
Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Frame = +1
Query: 439 RLLENPTPSRCLGVFGLSLYTTEQQINHIFS-KYGPVDKVQVVIDAKTGRSRGFCFV 606
R +EN P + V LS T+ ++ FS +Y V +VVID+ TGRS+G+ FV
Sbjct: 194 RAVENG-PDLSVFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFV 249
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 35.5 bits (78), Expect = 0.030
Identities = 19/43 (44%), Positives = 24/43 (55%)
Frame = +1
Query: 487 LSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVTLR 615
LS T+ + FS Y +V+ D KTGRSRGF FV+ R
Sbjct: 146 LSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFR 188
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 35.1 bits (77), Expect = 0.040
Identities = 18/45 (40%), Positives = 26/45 (57%)
Frame = +1
Query: 472 LGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFV 606
L + GLS T E + FS + V + +V+ + TGRSRG+ FV
Sbjct: 33 LYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFV 77
>At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 35.1 bits (77), Expect = 0.040
Identities = 17/66 (25%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Frame = +1
Query: 424 LGDRVRLLENPTP-SRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFC 600
+ +R+R + + P R + V GL T + + F +YG ++ + V D +G+S+G+
Sbjct: 125 VANRIREVADEDPVHRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYG 184
Query: 601 FVTLRT 618
F+ ++
Sbjct: 185 FILYKS 190
Score = 32.3 bits (70), Expect = 0.28
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = +1
Query: 508 QQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVTLRT 618
Q++ FSK+G +++ + +D TGR +GFC ++
Sbjct: 259 QKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKS 295
>At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 35.1 bits (77), Expect = 0.040
Identities = 17/66 (25%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Frame = +1
Query: 424 LGDRVRLLENPTP-SRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFC 600
+ +R+R + + P R + V GL T + + F +YG ++ + V D +G+S+G+
Sbjct: 125 VANRIREVADEDPVHRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYG 184
Query: 601 FVTLRT 618
F+ ++
Sbjct: 185 FILYKS 190
Score = 32.3 bits (70), Expect = 0.28
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = +1
Query: 508 QQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVTLRT 618
Q++ FSK+G +++ + +D TGR +GFC ++
Sbjct: 259 QKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKS 295
>At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 35.1 bits (77), Expect = 0.040
Identities = 17/66 (25%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Frame = +1
Query: 424 LGDRVRLLENPTP-SRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFC 600
+ +R+R + + P R + V GL T + + F +YG ++ + V D +G+S+G+
Sbjct: 125 VANRIREVADEDPVHRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYG 184
Query: 601 FVTLRT 618
F+ ++
Sbjct: 185 FILYKS 190
Score = 32.3 bits (70), Expect = 0.28
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = +1
Query: 508 QQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVTLRT 618
Q++ FSK+G +++ + +D TGR +GFC ++
Sbjct: 259 QKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKS 295
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 35.1 bits (77), Expect = 0.040
Identities = 18/43 (41%), Positives = 24/43 (55%)
Frame = +1
Query: 487 LSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVTLR 615
LS T+ + FS + +V+ D KTGRSRGF FV+ R
Sbjct: 151 LSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFR 193
>At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 347
Score = 35.1 bits (77), Expect = 0.040
Identities = 16/46 (34%), Positives = 28/46 (60%)
Frame = +1
Query: 478 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVTLR 615
V GL+ T ++ + F ++G + + V+ D +GRS+G+ FVT R
Sbjct: 17 VGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFR 62
>At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 242
Score = 35.1 bits (77), Expect = 0.040
Identities = 16/46 (34%), Positives = 28/46 (60%)
Frame = +1
Query: 478 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVTLR 615
V GL+ T ++ + F ++G + + V+ D +GRS+G+ FVT R
Sbjct: 17 VGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFR 62
>At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 249
Score = 35.1 bits (77), Expect = 0.040
Identities = 16/46 (34%), Positives = 28/46 (60%)
Frame = +1
Query: 478 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVTLR 615
V GL+ T ++ + F ++G + + V+ D +GRS+G+ FVT R
Sbjct: 17 VGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFR 62
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 34.7 bits (76), Expect = 0.052
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = +1
Query: 505 EQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVTL 612
++++ FSK G V +V V D +TG SRGF ++ L
Sbjct: 496 KKELRSHFSKCGEVTRVHVPTDRETGASRGFAYIDL 531
>At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 451
Score = 34.7 bits (76), Expect = 0.052
Identities = 16/66 (24%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Frame = +1
Query: 424 LGDRVRLL-ENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFC 600
+ +R+R++ + R + V GL T + F +YG ++ + V+D +G+S+G+
Sbjct: 113 VANRIRIVADEDLVHRKIFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYG 172
Query: 601 FVTLRT 618
F+ ++
Sbjct: 173 FILFKS 178
Score = 30.3 bits (65), Expect = 1.1
Identities = 14/51 (27%), Positives = 27/51 (52%)
Frame = +1
Query: 466 RCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVTLRT 618
R + V +S Q++ FS++G +++ + +D TGR +GF R+
Sbjct: 227 RKIYVSNVSADIDPQKLLEFFSRFGEIEEGPLGLDKATGRPKGFALFVYRS 277
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 34.7 bits (76), Expect = 0.052
Identities = 18/43 (41%), Positives = 24/43 (55%)
Frame = +1
Query: 487 LSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVTLR 615
LS T+ + FS + +V+ D KTGRSRGF FV+ R
Sbjct: 155 LSPEVTDAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFR 197
>At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 244
Score = 34.7 bits (76), Expect = 0.052
Identities = 15/44 (34%), Positives = 27/44 (61%)
Frame = +1
Query: 478 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVT 609
V GL+ T + + + F ++G + + V+ D +GRS+G+ FVT
Sbjct: 11 VGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVT 54
>At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 245
Score = 34.7 bits (76), Expect = 0.052
Identities = 15/44 (34%), Positives = 27/44 (61%)
Frame = +1
Query: 478 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVT 609
V GL+ T + + + F ++G + + V+ D +GRS+G+ FVT
Sbjct: 11 VGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVT 54
>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 272
Score = 34.3 bits (75), Expect = 0.069
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +1
Query: 478 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVTLRTW 621
V L+ TT + F ++G V VV + GRS+G+ F+T R +
Sbjct: 16 VGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITFRDY 63
>At2g47310.1 68415.m05906 flowering time control protein-related /
FCA gamma-related
Length = 512
Score = 34.3 bits (75), Expect = 0.069
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +1
Query: 472 LGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFV 606
L V +S TE I +F KYG V ++ + D TG +CF+
Sbjct: 112 LYVAPISKTATEYDIRQVFEKYGNVTEIILPKDKMTGERAAYCFI 156
Score = 32.7 bits (71), Expect = 0.21
Identities = 19/57 (33%), Positives = 33/57 (57%)
Frame = +1
Query: 436 VRLLENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFV 606
V+L +NP L V L+ TT+ ++N +FS+YG ++ + + +D RG+ FV
Sbjct: 201 VQLPDNPK----LYVRCLNKQTTKMEVNEVFSRYGIIEDIYMALD-DMKICRGYAFV 252
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 34.3 bits (75), Expect = 0.069
Identities = 20/51 (39%), Positives = 25/51 (49%)
Frame = +1
Query: 454 PTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFV 606
P L V LS T + + F + G V +VV D TGRSRG+ FV
Sbjct: 173 PETEHKLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFV 223
Score = 29.5 bits (63), Expect = 2.0
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +1
Query: 442 LLENPTPSRCLGVFGLSLYTTEQQ-INHIFSKYGPVDKVQVVIDAKTGRSRGFCFVTL 612
+L+ P FG Y + + I + + V+V+ + TG+SRGF FVT+
Sbjct: 76 VLDPPAAVNTKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTM 133
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 34.3 bits (75), Expect = 0.069
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = +1
Query: 460 PSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFV 606
P L V L+ T ++ ++ IFS++G V V+ D KTG S + F+
Sbjct: 241 PDNVLFVCKLNPVTEDEDLHTIFSRFGTVVSADVIRDFKTGDSLCYAFI 289
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 34.3 bits (75), Expect = 0.069
Identities = 16/44 (36%), Positives = 26/44 (59%)
Frame = +1
Query: 478 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVT 609
V L +T + + FSK+G + +V+ D KTGR+R F F++
Sbjct: 216 VGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLS 259
Score = 27.9 bits (59), Expect = 6.0
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +1
Query: 511 QINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVTL 612
Q+ +F +G V V+V + +TG SRG +VT+
Sbjct: 123 QLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTM 156
>At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing
protein
Length = 573
Score = 33.9 bits (74), Expect = 0.092
Identities = 13/40 (32%), Positives = 26/40 (65%)
Frame = +1
Query: 487 LSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFV 606
L +TT+ +I + S+YG V +++ + +G+S+G+C V
Sbjct: 209 LHWWTTDAEIESVLSQYGRVKEIKFFDERVSGKSKGYCQV 248
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 33.5 bits (73), Expect = 0.12
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +1
Query: 460 PSRCLGVFGLSLYTTEQQINHIFSK-YGPVDKVQVVIDAKTGRSRGFCFV 606
P + V L+ T+ ++ F YG V +VV+D TGRS+G+ FV
Sbjct: 152 PDHTIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFV 201
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 33.5 bits (73), Expect = 0.12
Identities = 18/48 (37%), Positives = 25/48 (52%)
Frame = +1
Query: 466 RCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVT 609
R L V G+ + SK+G ++ V+ D TGRSRGF +VT
Sbjct: 3 RKLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVT 50
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 33.5 bits (73), Expect = 0.12
Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +1
Query: 460 PSRC-LGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFV 606
PS+ L V L T I+ +FS +G V +V V+ D T +SRG FV
Sbjct: 54 PSKSTLYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFV 103
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 33.5 bits (73), Expect = 0.12
Identities = 15/47 (31%), Positives = 28/47 (59%)
Frame = +1
Query: 466 RCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFV 606
R + + ++L TE+ + FS+ G V V++++D + RSRG +V
Sbjct: 182 RTVFAYQIALRATERDVYEFFSRAGKVRDVRIIMDRISRRSRGIGYV 228
>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 261
Score = 32.7 bits (71), Expect = 0.21
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = +1
Query: 478 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVTLRTWK 624
V GL+ T ++ + F KYG + + ++ D T RS+G+ FVT + K
Sbjct: 21 VGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAK 69
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 32.7 bits (71), Expect = 0.21
Identities = 17/35 (48%), Positives = 23/35 (65%)
Frame = +1
Query: 502 TEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFV 606
T+ ++ +FS+YG V V V+ D GRSRGF FV
Sbjct: 214 TDDCLHTLFSQYGTVSSVVVMRDG-MGRSRGFGFV 247
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 32.7 bits (71), Expect = 0.21
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = +1
Query: 448 ENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFV 606
++P + + V GL T Q+ FS+ GPV + +V + + RGF FV
Sbjct: 14 KSPHAAATVCVSGLPYSITNAQLEEAFSEVGPVRRCFLVTNKGSDEHRGFAFV 66
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 32.3 bits (70), Expect = 0.28
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = +1
Query: 496 YTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFV 606
+ +E Q+ +F ++ VD+V ++ D T SRG CF+
Sbjct: 28 HMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFL 64
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 32.3 bits (70), Expect = 0.28
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = +1
Query: 496 YTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFV 606
+ +E Q+ +F ++ VD+V ++ D T SRG CF+
Sbjct: 28 HMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFL 64
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 31.9 bits (69), Expect = 0.37
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = +1
Query: 463 SRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVTLR 615
S L V L+ TTE + +F +YG +D++ V SRGF F+ R
Sbjct: 17 SNNLWVGSLTPETTESDLTELFGRYGDIDRITVY------SSRGFAFIYYR 61
>At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing
protein
Length = 710
Score = 31.5 bits (68), Expect = 0.49
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = +1
Query: 472 LGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFV 606
L V L +TT+ ++ KYG V +V+ + +G+S+G+C V
Sbjct: 236 LFVGDLHWWTTDAELEAELCKYGAVKEVKFFDEKASGKSKGYCQV 280
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 30.7 bits (66), Expect = 0.85
Identities = 17/52 (32%), Positives = 28/52 (53%)
Frame = +1
Query: 451 NPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFV 606
N T + V L+ TT+ + + F +YG + V+ D + G+S+GF FV
Sbjct: 24 NKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGE-GKSKGFGFV 74
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 30.3 bits (65), Expect = 1.1
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 508 QQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFV 606
+++ F ++GPV V + D +G+ RGF FV
Sbjct: 61 EELREPFERFGPVRDVYIPRDYYSGQPRGFAFV 93
>At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 674
Score = 30.3 bits (65), Expect = 1.1
Identities = 17/56 (30%), Positives = 30/56 (53%)
Frame = +1
Query: 439 RLLENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFV 606
R LE+ + SR + V + T+ ++ F+K+G V K +V D TG+ G ++
Sbjct: 508 RPLEDAS-SRTIFVANVHFGATKDSLSRHFNKFGEVLKAFIVTDPATGQPSGSAYI 562
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +1
Query: 532 KYGPVDKVQVVIDAKTGRSRGFCFV 606
+Y V +VVID+ TGRS+G+ FV
Sbjct: 236 RYPSVKGAKVVIDSNTGRSKGYGFV 260
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 29.9 bits (64), Expect = 1.5
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +1
Query: 496 YTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVTLRT 618
+ TE Q+ +F ++ V++V ++ + T RG CF+T T
Sbjct: 22 HMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPT 62
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 29.9 bits (64), Expect = 1.5
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +1
Query: 496 YTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVTLRT 618
+ TE Q+ +F ++ V++V ++ + T RG CF+T T
Sbjct: 22 HMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPT 62
>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
protein low similarity to glycine-rich RNA-binding
protein [Euphorbia esula] GI:2645699; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 337
Score = 29.5 bits (63), Expect = 2.0
Identities = 17/44 (38%), Positives = 26/44 (59%)
Frame = +1
Query: 478 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVT 609
V GL TE+ + +FS YG V V++V D ++ R + + FVT
Sbjct: 11 VGGLPYDITEEAVRRVFSIYGSVLTVKIVND-RSVRGKCYGFVT 53
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 29.5 bits (63), Expect = 2.0
Identities = 13/20 (65%), Positives = 16/20 (80%)
Frame = +1
Query: 556 QVVIDAKTGRSRGFCFVTLR 615
+V+ D KTGRSRGF FV+ R
Sbjct: 182 RVMWDQKTGRSRGFGFVSFR 201
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 29.1 bits (62), Expect = 2.6
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +1
Query: 484 GLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVTLRT 618
GL E+++ + YG ++KV++ + + R + F FVT T
Sbjct: 397 GLLPSWNEERVRDLLKPYGKLEKVELARNMPSARRKDFGFVTFDT 441
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 28.7 bits (61), Expect = 3.4
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +1
Query: 463 SRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFV 606
SR + V L E+++ +FSKYGPV ++ + I R G+ FV
Sbjct: 6 SRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPP---RPPGYAFV 50
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 28.7 bits (61), Expect = 3.4
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +1
Query: 463 SRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFV 606
SR + V L E+++ +FSKYGPV ++ + I R G+ FV
Sbjct: 6 SRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPP---RPPGYAFV 50
>At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28)
nearly identical to SC35-like splicing factor SCL28, 28
kD [Arabidopsis thaliana] GI:9843655; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 236
Score = 28.3 bits (60), Expect = 4.5
Identities = 17/56 (30%), Positives = 26/56 (46%)
Frame = +1
Query: 448 ENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVTLR 615
E+ PS L + L L + F ++GP+ + + + TG RGF FV R
Sbjct: 42 ESSGPSGLL-IRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYR 96
>At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 451
Score = 28.3 bits (60), Expect = 4.5
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = +1
Query: 490 SLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVTLRT 618
S + TE+++ +FS+ G + V++ G+SR F ++ RT
Sbjct: 11 SKHVTEERLRDVFSRKGEIADVKLK-RKSDGKSRQFAYIGFRT 52
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 28.3 bits (60), Expect = 4.5
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +1
Query: 460 PSRCLGVFGLSLYTTEQQINHIFSK-YGPVDKVQVVIDAKTGRSRGFCFV 606
P + V L+ T+ + F Y V +VV D TGRS+G+ FV
Sbjct: 171 PEHTVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFV 220
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 28.3 bits (60), Expect = 4.5
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +1
Query: 478 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFV 606
V LS TT+ ++ F +YG + V+ D G+SR F FV
Sbjct: 229 VKNLSEATTDDELKTTFGQYGSISSAVVMRDG-DGKSRCFGFV 270
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 28.3 bits (60), Expect = 4.5
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +1
Query: 505 EQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFV 606
++ + F ++GPV + + D TG RGF FV
Sbjct: 49 QEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFV 82
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 27.9 bits (59), Expect = 6.0
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +1
Query: 520 HIFSKYGPVDKVQVVIDAKTGRSRGFCFV 606
++FS +G + +V+ D TG S+G+ FV
Sbjct: 498 NLFSSFGEIVMAKVIKDRVTGLSKGYGFV 526
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 27.9 bits (59), Expect = 6.0
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +1
Query: 520 HIFSKYGPVDKVQVVIDAKTGRSRGFCFV 606
++FS +G + +V+ D TG S+G+ FV
Sbjct: 498 NLFSSFGEIVMAKVIKDRVTGLSKGYGFV 526
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 27.9 bits (59), Expect = 6.0
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +1
Query: 460 PSRCLGVFGLSLYTTEQQINHIFS-KYGPVDKVQVVIDAKTGRSRGFCFV 606
P + V L+ T+ + F Y V +VV D TGRS+G+ FV
Sbjct: 114 PDHSIFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFV 163
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 27.9 bits (59), Expect = 6.0
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +1
Query: 505 EQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFV 606
++ + F ++GPV + + D TG RGF F+
Sbjct: 50 QEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFI 83
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 27.9 bits (59), Expect = 6.0
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +1
Query: 463 SRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKT-GRSRGFCFV 606
SR + V L E+++ +FSKYGPV V ID K R G+ FV
Sbjct: 6 SRTVYVGNLPGDIREREVEDLFSKYGPV----VQIDLKVPPRPPGYAFV 50
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 27.9 bits (59), Expect = 6.0
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +1
Query: 463 SRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKT-GRSRGFCFV 606
SR + V L E+++ +FSKYGPV V ID K R G+ FV
Sbjct: 6 SRTVYVGNLPGDIREREVEDLFSKYGPV----VQIDLKVPPRPPGYAFV 50
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 27.9 bits (59), Expect = 6.0
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +1
Query: 463 SRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKT-GRSRGFCFV 606
SR + V L E+++ +FSKYGPV V ID K R G+ FV
Sbjct: 6 SRTVYVGNLPGDIREREVEDLFSKYGPV----VQIDLKVPPRPPGYAFV 50
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 27.5 bits (58), Expect = 7.9
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +1
Query: 457 TPSRCLGVFGLSLYTTEQQINHIF-SKYGPVDKVQVVIDAKTGRSRGFCFV 606
+P + V L+ T+ + F + Y V +VVID TGR++G+ FV
Sbjct: 152 SPDYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFV 202
>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 306
Score = 27.5 bits (58), Expect = 7.9
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +1
Query: 457 TPSRCLGVFGLSLYTTEQQINHIF-SKYGPVDKVQVVIDAKTGRSRGFCFV 606
+P + V L+ T+ + F + Y V +VVID TGR++G+ FV
Sbjct: 152 SPDYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFV 202
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,850,508
Number of Sequences: 28952
Number of extensions: 222814
Number of successful extensions: 771
Number of sequences better than 10.0: 145
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 768
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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