Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_P17
         (451 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    23   1.8  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    23   1.8  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    20   9.4  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    20   9.4  

>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 134 SNLKIVFGYWITCLER 181
           +N+ I FGY I+C+ R
Sbjct: 537 ANVAISFGYLISCVSR 552


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 134 SNLKIVFGYWITCLER 181
           +N+ I FGY I+C+ R
Sbjct: 537 ANVAISFGYLISCVSR 552


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -3

Query: 314  DEVRQFICNQDIRYWLS 264
            DEV  +  N  I YW+S
Sbjct: 1612 DEVVFYNANFSINYWIS 1628


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 398 EMEDSLGLFQTPSSLW 445
           E+  SLGL QT   +W
Sbjct: 153 ELAASLGLTQTQVKIW 168


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,707
Number of Sequences: 336
Number of extensions: 2379
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10195961
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)