Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_P17
(451 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1A10.03 |nxt1||mRNA export receptor Nxt1|Schizosaccharomyce... 44 8e-06
SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomy... 27 1.8
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos... 26 3.1
SPAC27D7.08c |||DUF890 family protein|Schizosaccharomyces pombe|... 25 4.1
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce... 25 4.1
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 25 7.1
SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomy... 25 7.1
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 25 7.1
SPBC1778.09 |||GTPase activating protein |Schizosaccharomyces po... 25 7.1
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos... 24 9.4
SPAC644.11c |||pyruvate dehydrogenase |Schizosaccharomyces pombe... 24 9.4
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 24 9.4
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 24 9.4
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe... 24 9.4
SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit C... 24 9.4
>SPAPB1A10.03 |nxt1||mRNA export receptor Nxt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 44.4 bits (100), Expect = 8e-06
Identities = 20/96 (20%), Positives = 51/96 (53%)
Frame = +3
Query: 63 VDSACETAEEFTRVFYKQVDNSRHLTSKLYLDTGLLVWNGNGISGNDKIQKFLMDLPASN 242
++S+ + A+EF + +Y +D +R+ ++ Y + L++WNG + + +++LP S
Sbjct: 1 MESSVKYAQEFVQRYYSSLDTNRNGIAEFYRENSLILWNGKPMQVTE-FTSMIVNLPYSK 59
Query: 243 HTLKSLDAQPISDVLVANKLTYLIQACGDVTYQNEE 350
++ D+Q + + N + +I G + + ++
Sbjct: 60 TKVEDFDSQQV----MGNDMNIIIVVSGTIRFDGKK 91
>SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 454
Score = 26.6 bits (56), Expect = 1.8
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = -3
Query: 440 RNLESETIRGYLPFPINC-HYEKSLLKWFLCF 348
R L+S+T YL +P N +K+L WFLC+
Sbjct: 267 RRLKSKTEDTYL-YPANSPEVKKALENWFLCY 297
>SPCC1450.11c |cek1||serine/threonine protein kinase
Cek1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1338
Score = 25.8 bits (54), Expect = 3.1
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +3
Query: 195 GNDKIQKFLMDLPASNHTLKSLDAQPI 275
G + K+L DL S H SLDA P+
Sbjct: 182 GASLLDKYLCDLRTSYHKHNSLDALPL 208
>SPAC27D7.08c |||DUF890 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 385
Score = 25.4 bits (53), Expect = 4.1
Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = -3
Query: 368 LKWFLCFFVLISNISTSLDEVR-QFICNQDIRYWLSI*TFQRMVTC 234
++W+ C F S++ +D++R Q I N I Y L++ +R + C
Sbjct: 207 IQWYTCMFGKKSSVPAVVDKLREQNISNYGI-YELALGKTKRWIIC 251
>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2310
Score = 25.4 bits (53), Expect = 4.1
Identities = 15/52 (28%), Positives = 27/52 (51%)
Frame = +3
Query: 165 LLVWNGNGISGNDKIQKFLMDLPASNHTLKSLDAQPISDVLVANKLTYLIQA 320
L+ + NG + + K + DLP N + ++L + I L+A+ L L+ A
Sbjct: 632 LIAFANNGFAFHPKSSSWTYDLPVINRSFEALSSYDIPP-LLASLLDALLPA 682
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 24.6 bits (51), Expect = 7.1
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Frame = +3
Query: 225 DLPASNHTLK----SLDAQPISDVLVANKLTYLIQACGDVTYQNEETKKPFQ 368
D+P+ N +K + AQ ++ L + ++I GDV+Y N E P +
Sbjct: 1156 DIPSLNICIKIGGLGVMAQLMARHLEHEDIIWVIPCVGDVSYSNVEEDDPIE 1207
>SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 589
Score = 24.6 bits (51), Expect = 7.1
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +3
Query: 48 VAVKNVDSACETAEEFTRVFYKQVDNSRHLTSKLYLDTGLL 170
VA+K++D C+T +E + S H YLD+ L+
Sbjct: 340 VAIKSIDLQCQTRKELILNEITVMRESIHPNIVTYLDSFLV 380
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 24.6 bits (51), Expect = 7.1
Identities = 16/40 (40%), Positives = 27/40 (67%)
Frame = -1
Query: 163 PVSKYNFEVRWRLLSTCL*NTLVNSSAVSQALSTFFTATS 44
PV ++N + R ++T L T + SAV+ +LSTF++A+S
Sbjct: 3909 PVVQFNNFTK-REITTIL-ITASDGSAVTTSLSTFYSASS 3946
>SPBC1778.09 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 414
Score = 24.6 bits (51), Expect = 7.1
Identities = 15/71 (21%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Frame = +3
Query: 180 GNGISGNDKIQKFL-----MDLPASNHTLKSLDAQPISDVLVANKLTYLIQACGDVTYQN 344
GN + G+D + K++ M +P +H + A+ +S + + + G+ +
Sbjct: 86 GNKLIGHDDMLKYVDESIFMVVPGESHDRNEISAKELSRIQKWKSMCSIHLVSGNQLHSF 145
Query: 345 EETKKPFQQTF 377
+T+K +TF
Sbjct: 146 RKTRKLILRTF 156
>SPAC926.09c |fas1||fatty acid synthase beta subunit
Fas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2073
Score = 24.2 bits (50), Expect = 9.4
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -2
Query: 267 EHLNFSAYGYLQANPSRIS 211
+ L S YG + ANPSR+S
Sbjct: 1865 DELGRSDYGMVAANPSRVS 1883
>SPAC644.11c |||pyruvate dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 24.2 bits (50), Expect = 9.4
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -3
Query: 395 INCHYEKSLLKWFLCFFVLISNISTSLDEV 306
++C++ +SLLK+ F L++ I T D V
Sbjct: 152 VDCNWPESLLKFNSNFAYLLNTIRTRHDNV 181
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 24.2 bits (50), Expect = 9.4
Identities = 15/80 (18%), Positives = 31/80 (38%)
Frame = +3
Query: 36 ICLDVAVKNVDSACETAEEFTRVFYKQVDNSRHLTSKLYLDTGLLVWNGNGISGNDKIQK 215
+ L + +K + +FT K + K++++T + +SG K
Sbjct: 950 VYLMIFIKIFQKCVHSKLQFTDATLKLIVKITKFIEKVFIETKF-----SSLSGRQTFLK 1004
Query: 216 FLMDLPASNHTLKSLDAQPI 275
F+ L ++H D Q +
Sbjct: 1005 FIFQLSPTSHVYSKFDYQKL 1024
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 24.2 bits (50), Expect = 9.4
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = -3
Query: 338 ISNISTSLDEVRQFICNQDIRYWLSI*TFQRMVTCRQIHQEFLYF 204
I ST E+ + CN + YW S Q + T R+ EF+ F
Sbjct: 502 IDKSSTQRLEMLEQYCNNGLEYWGS--DSQGVNTTRRFFLEFMSF 544
>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 719
Score = 24.2 bits (50), Expect = 9.4
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Frame = +3
Query: 3 FLFQXLEQKI*ICLDVAVKN--VDSACETAEEFTRVFYKQVDNSRHLTSKLYLDTGLLVW 176
F F+ E KI +CL V +KN V S + F +F + + +R + LY L +
Sbjct: 93 FPFELCE-KIVLCL-VLLKNKTVISPITLLQCFFPLFRE--NPTRGVRELLYQQVSLTIR 148
Query: 177 NGNGISGNDKIQK 215
N N + NDK+ K
Sbjct: 149 NANKQAKNDKLNK 161
>SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit
Cwp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 294
Score = 24.2 bits (50), Expect = 9.4
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +2
Query: 299 IDVPHPSLWRCYLSKRRN 352
+DVPH +LW ++S+R N
Sbjct: 277 VDVPHAALW-TWMSQRSN 293
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,970,904
Number of Sequences: 5004
Number of extensions: 40583
Number of successful extensions: 110
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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