Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_P17
         (451 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57481| Best HMM Match : PP2C (HMM E-Value=2.9e-32)                  27   5.4  
SB_34190| Best HMM Match : MAM (HMM E-Value=0)                         27   5.4  
SB_50334| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.4  
SB_43241| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  
SB_32609| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     27   7.2  

>SB_57481| Best HMM Match : PP2C (HMM E-Value=2.9e-32)
          Length = 435

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 19/69 (27%), Positives = 29/69 (42%)
 Frame = +3

Query: 213 KFLMDLPASNHTLKSLDAQPISDVLVANKLTYLIQACGDVTYQNEETKKPFQQTFLIVAV 392
           +F  D    N         P+S+V       YL      ++YQ + T K     FL++A 
Sbjct: 278 RFKWDKKTQNKVYSKSSLNPMSEVEHFYTPPYLTAEPEVMSYQLQRTDK-----FLVLAT 332

Query: 393 DGKWKIASD 419
           DG W + S+
Sbjct: 333 DGLWDMLSN 341


>SB_34190| Best HMM Match : MAM (HMM E-Value=0)
          Length = 384

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 26/94 (27%), Positives = 39/94 (41%)
 Frame = +3

Query: 159 TGLLVWNGNGISGNDKIQKFLMDLPASNHTLKSLDAQPISDVLVANKLTYLIQACGDVTY 338
           T  +VW   G  GN  +Q  L+D+       KS D   +    +     Y   A  DVT+
Sbjct: 271 TMAIVWTRRGNHGNQWLQG-LVDI-------KSSDTYQVMFEAIRGTSYYGDIALDDVTF 322

Query: 339 QNEETKKPFQQTFLIVAVDGKWKIASDCFRLQVP 440
           +N +   P Q+  L +      +  S  FRL+ P
Sbjct: 323 RNGDCNCPLQKQQLRMRQPSHPQSPSAFFRLKAP 356


>SB_50334| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 328

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -2

Query: 240 YLQ-ANPSRISVFCHCH*YHCRSKQVIQYPNTILRLDGGCCLLV 112
           YLQ A P + S F   + YH  + Q+  YP T+  ++    LLV
Sbjct: 275 YLQKAEPEQYSHFIRSNGYHLLANQLYDYPITMETVEACLWLLV 318


>SB_43241| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2022

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +3

Query: 108 YKQVDNSRHLTSKLYLDTGLLVWNGNGISGNDKI 209
           Y + D  RHLT  L       +W   G SGN ++
Sbjct: 255 YMKADGGRHLTRSLAHVYHFYLWGETGCSGNMRL 288


>SB_32609| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 1741

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +3

Query: 165  LLVWNGNGISGNDKIQKFLMDLPASNHTLKSLDA-QPI 275
            +L+WN N +S ++ +   L D P + H  ++  A QP+
Sbjct: 1569 ILLWNSNDVSRHNALCDGLKDTPLNGHAAQNTFASQPL 1606


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,095,248
Number of Sequences: 59808
Number of extensions: 284165
Number of successful extensions: 805
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 798
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 896151577
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)