Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_P17
         (451 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF156960-1|AAD54945.1|  137|Caenorhabditis elegans NTF2-related ...    84   5e-17
AC024852-2|AAK66028.1|  137|Caenorhabditis elegans Ntf2-related ...    84   5e-17
AC024852-3|ABQ13048.1|  131|Caenorhabditis elegans Ntf2-related ...    73   1e-13
AC006684-6|AAF39964.1|  361|Caenorhabditis elegans Hypothetical ...    31   0.51 
U28929-4|AAA68347.3|  338|Caenorhabditis elegans Hypothetical pr...    28   2.7  
AF077533-3|AAC64626.1| 1023|Caenorhabditis elegans Hypothetical ...    27   4.8  
U80931-3|AAO91701.1|  160|Caenorhabditis elegans Hypothetical pr...    27   6.3  
U80931-2|AAB37999.1|  467|Caenorhabditis elegans Hypothetical pr...    27   6.3  
U13019-15|AAK84567.2|  317|Caenorhabditis elegans Serpentine rec...    27   6.3  
AF003385-1|AAB54243.1|  884|Caenorhabditis elegans Hypothetical ...    27   6.3  
U80028-10|AAN73868.2|  376|Caenorhabditis elegans Serpentine rec...    27   8.3  

>AF156960-1|AAD54945.1|  137|Caenorhabditis elegans NTF2-related
           export protein NXT1 protein.
          Length = 137

 Score = 83.8 bits (198), Expect = 5e-17
 Identities = 44/125 (35%), Positives = 68/125 (54%), Gaps = 1/125 (0%)
 Frame = +3

Query: 57  KNVDSACETAEEFTRVFYKQVDNSRHLTSKLYLDTGLLVWNGNGISGNDKIQKFLMDLPA 236
           K  +  C  +++F  V+Y  +D  R     LY      VWNGN I+G D I +F+  LP+
Sbjct: 11  KEDEELCNESKKFMDVYYDVMDRKREKIGFLYTQVSNAVWNGNPINGYDSICEFMKALPS 70

Query: 237 SNHTLKSLDAQPISDVLVANKL-TYLIQACGDVTYQNEETKKPFQQTFLIVAVDGKWKIA 413
           + H ++SLDAQ + + +  +     L+   G VT    ++K+ F QT L+   DGK+K+ 
Sbjct: 71  TQHDIQSLDAQRLPEGVTGDMSGGMLLNVAGAVTVDG-DSKRAFTQTLLLGVEDGKYKVK 129

Query: 414 SDCFR 428
           SD FR
Sbjct: 130 SDRFR 134


>AC024852-2|AAK66028.1|  137|Caenorhabditis elegans Ntf2-related
           export protein protein1, isoform a protein.
          Length = 137

 Score = 83.8 bits (198), Expect = 5e-17
 Identities = 44/125 (35%), Positives = 68/125 (54%), Gaps = 1/125 (0%)
 Frame = +3

Query: 57  KNVDSACETAEEFTRVFYKQVDNSRHLTSKLYLDTGLLVWNGNGISGNDKIQKFLMDLPA 236
           K  +  C  +++F  V+Y  +D  R     LY      VWNGN I+G D I +F+  LP+
Sbjct: 11  KEDEELCNESKKFMDVYYDVMDRKREKIGFLYTQVSNAVWNGNPINGYDSICEFMKALPS 70

Query: 237 SNHTLKSLDAQPISDVLVANKL-TYLIQACGDVTYQNEETKKPFQQTFLIVAVDGKWKIA 413
           + H ++SLDAQ + + +  +     L+   G VT    ++K+ F QT L+   DGK+K+ 
Sbjct: 71  TQHDIQSLDAQRLPEGVTGDMSGGMLLNVAGAVTVDG-DSKRAFTQTLLLGVEDGKYKVK 129

Query: 414 SDCFR 428
           SD FR
Sbjct: 130 SDRFR 134


>AC024852-3|ABQ13048.1|  131|Caenorhabditis elegans Ntf2-related
           export protein protein1, isoform b protein.
          Length = 131

 Score = 72.9 bits (171), Expect = 1e-13
 Identities = 42/125 (33%), Positives = 65/125 (52%), Gaps = 1/125 (0%)
 Frame = +3

Query: 57  KNVDSACETAEEFTRVFYKQVDNSRHLTSKLYLDTGLLVWNGNGISGNDKIQKFLMDLPA 236
           K  +  C  +++F  V+Y  +D  R     LY      VWNGN I+G      F+  LP+
Sbjct: 11  KEDEELCNESKKFMDVYYDVMDRKREKIGFLYTQVSNAVWNGNPING------FMKALPS 64

Query: 237 SNHTLKSLDAQPISDVLVANKL-TYLIQACGDVTYQNEETKKPFQQTFLIVAVDGKWKIA 413
           + H ++SLDAQ + + +  +     L+   G VT    ++K+ F QT L+   DGK+K+ 
Sbjct: 65  TQHDIQSLDAQRLPEGVTGDMSGGMLLNVAGAVTVDG-DSKRAFTQTLLLGVEDGKYKVK 123

Query: 414 SDCFR 428
           SD FR
Sbjct: 124 SDRFR 128


>AC006684-6|AAF39964.1|  361|Caenorhabditis elegans Hypothetical
           protein T02H6.5 protein.
          Length = 361

 Score = 30.7 bits (66), Expect = 0.51
 Identities = 20/49 (40%), Positives = 28/49 (57%)
 Frame = -1

Query: 262 SKLFSVWLLAGKSIKNFCILSLPLIPLPFQTSNPVSKYNFEVRWRLLST 116
           SKLF  +    K+ K F +L LPL+PL     N +++ +FE  WRL  T
Sbjct: 4   SKLFFAYF--HKNEKPFKMLCLPLLPL----KNVINQMSFESVWRLSKT 46


>U28929-4|AAA68347.3|  338|Caenorhabditis elegans Hypothetical
           protein F09C12.6 protein.
          Length = 338

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 17/53 (32%), Positives = 28/53 (52%)
 Frame = -3

Query: 215 FLYFVIATDTIAVPNK*SSIQIQF*G*MAAVVYLFVKHSSKFFSCLTSTINIF 57
           F+ FV+    +++PN  S + + F       V  F+   S +F+C+ S INIF
Sbjct: 242 FISFVL----VSIPNAISILSVHF-----EEVVSFISKPSTYFTCVNSGINIF 285


>AF077533-3|AAC64626.1| 1023|Caenorhabditis elegans Hypothetical
           protein F54G2.2 protein.
          Length = 1023

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +3

Query: 57  KNVDSACETAEEFTRVFYKQVDNSRHLTS 143
           ++++  C   +E  R+ YK+VDN   L+S
Sbjct: 432 QSIEDFCLKLDEIARIAYKRVDNPAELSS 460


>U80931-3|AAO91701.1|  160|Caenorhabditis elegans Hypothetical
           protein T01B11.2b protein.
          Length = 160

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 9/30 (30%), Positives = 21/30 (70%)
 Frame = -3

Query: 131 AAVVYLFVKHSSKFFSCLTSTINIFYCYIK 42
           A++ YL+ + S+KF  C+++  ++ +C+ K
Sbjct: 56  ASMQYLYDEKSNKFLDCISNVQHVGHCHPK 85


>U80931-2|AAB37999.1|  467|Caenorhabditis elegans Hypothetical
           protein T01B11.2a protein.
          Length = 467

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 9/30 (30%), Positives = 21/30 (70%)
 Frame = -3

Query: 131 AAVVYLFVKHSSKFFSCLTSTINIFYCYIK 42
           A++ YL+ + S+KF  C+++  ++ +C+ K
Sbjct: 56  ASMQYLYDEKSNKFLDCISNVQHVGHCHPK 85


>U13019-15|AAK84567.2|  317|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 5 protein.
          Length = 317

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -2

Query: 303 SIYLQPRHQILVEHLNFSAYGYLQANPSRISVF 205
           S+Y    H +L  ++ FS Y Y++A  S I +F
Sbjct: 90  SLYPLFEHYVLFPNIIFSIYNYMRAAKSIIQIF 122


>AF003385-1|AAB54243.1|  884|Caenorhabditis elegans Hypothetical
           protein R08F11.1 protein.
          Length = 884

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = +3

Query: 108 YKQVDNSRHLTSKLYLDTGLLVWNGNGISGNDKIQKFLMDLPASNHTLKSL 260
           Y++V+ S  +T      TG   WN   +  + KIQK  M +    HT+K +
Sbjct: 244 YEEVEVS--ITMSFRNGTGNRKWNDENLCQSQKIQKDTMVVRTLAHTVKGM 292


>U80028-10|AAN73868.2|  376|Caenorhabditis elegans Serpentine
           receptor, class w protein139 protein.
          Length = 376

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 12/47 (25%), Positives = 22/47 (46%)
 Frame = -1

Query: 298 LFATKTSDIG*ASKLFSVWLLAGKSIKNFCILSLPLIPLPFQTSNPV 158
           LF T    +   S+  S WL    ++    ++S PL+P   + + P+
Sbjct: 114 LFNTSVESLRDYSRRCSTWLCLSIALLRLLVISNPLVPKYIKLTKPI 160


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,765,046
Number of Sequences: 27780
Number of extensions: 221300
Number of successful extensions: 677
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)