Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_P17
(451 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat... 25 0.50
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 23 1.5
AY395073-1|AAQ96729.1| 203|Apis mellifera GABA neurotransmitter... 23 2.0
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 22 3.6
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 22 3.6
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 22 3.6
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 22 3.6
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 22 3.6
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 22 3.6
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 22 3.6
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 22 3.6
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr... 21 4.7
U26026-1|AAA69069.1| 377|Apis mellifera long-wavelength rhodops... 21 6.2
AY703752-1|AAU12748.1| 152|Apis mellifera long-wavelength rhodo... 21 6.2
AM050259-1|CAJ18340.1| 683|Apis mellifera putative H3K9 methylt... 21 6.2
AY463910-1|AAR24352.1| 843|Apis mellifera metabotropic glutamat... 21 8.2
AB161181-1|BAD08343.1| 933|Apis mellifera metabotropic glutamat... 21 8.2
>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
receptor protein.
Length = 1040
Score = 24.6 bits (51), Expect = 0.50
Identities = 21/96 (21%), Positives = 39/96 (40%), Gaps = 1/96 (1%)
Frame = -1
Query: 439 GTWSL-KQSEAIFHFPSTATMRKVC*NGXXXXXXXXVTSPQAWMRYVNLFATKTSDIG*A 263
G W + ++A+ H+P+ VC + P + ++A T I
Sbjct: 784 GVWMIIDPAKAMHHYPTREDNLLVCNSYVDASYMIAFAYPIMLIVVCTVYAVLTRKI--- 840
Query: 262 SKLFSVWLLAGKSIKNFCILSLPLIPLPFQTSNPVS 155
+ F+ G ++ C++ L +PL F T N V+
Sbjct: 841 PEAFNESKHIGFTMYTTCVIWLAFVPLYFGTGNNVA 876
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 23.0 bits (47), Expect = 1.5
Identities = 7/14 (50%), Positives = 11/14 (78%)
Frame = +2
Query: 140 LKIVFGYWITCLER 181
+K+VF YW+ C+ R
Sbjct: 332 VKVVFLYWLPCILR 345
>AY395073-1|AAQ96729.1| 203|Apis mellifera GABA neurotransmitter
transporter-1A protein.
Length = 203
Score = 22.6 bits (46), Expect = 2.0
Identities = 7/18 (38%), Positives = 11/18 (61%)
Frame = -3
Query: 371 LLKWFLCFFVLISNISTS 318
LL W LC+F + + T+
Sbjct: 181 LLVWILCYFCIWKGVKTT 198
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.8 bits (44), Expect = 3.6
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +2
Query: 131 PSNLKIVFGYWITCLER 181
PS +K++F W+ CL R
Sbjct: 292 PSWIKMLFLQWLPCLLR 308
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.8 bits (44), Expect = 3.6
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +2
Query: 131 PSNLKIVFGYWITCLER 181
PS +K++F W+ CL R
Sbjct: 292 PSWIKMLFLQWLPCLLR 308
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.8 bits (44), Expect = 3.6
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +2
Query: 131 PSNLKIVFGYWITCLER 181
PS +K++F W+ CL R
Sbjct: 292 PSWIKMLFLQWLPCLLR 308
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.8 bits (44), Expect = 3.6
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +2
Query: 131 PSNLKIVFGYWITCLER 181
PS +K++F W+ CL R
Sbjct: 292 PSWIKMLFLQWLPCLLR 308
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.8 bits (44), Expect = 3.6
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +2
Query: 131 PSNLKIVFGYWITCLER 181
PS +K++F W+ CL R
Sbjct: 292 PSWIKMLFLQWLPCLLR 308
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.8 bits (44), Expect = 3.6
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +2
Query: 131 PSNLKIVFGYWITCLER 181
PS +K++F W+ CL R
Sbjct: 292 PSWIKMLFLQWLPCLLR 308
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 3.6
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +2
Query: 131 PSNLKIVFGYWITCLER 181
PS +K++F W+ CL R
Sbjct: 360 PSWIKMLFLQWLPCLLR 376
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 3.6
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +2
Query: 131 PSNLKIVFGYWITCLER 181
PS +K++F W+ CL R
Sbjct: 360 PSWIKMLFLQWLPCLLR 376
>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
protein.
Length = 1370
Score = 21.4 bits (43), Expect = 4.7
Identities = 7/34 (20%), Positives = 19/34 (55%)
Frame = +3
Query: 297 KLTYLIQACGDVTYQNEETKKPFQQTFLIVAVDG 398
+L Y I + GD++ +++ + +++ +DG
Sbjct: 1199 RLRYAIPSAGDISIESKSSPLVYKRNINTYTLDG 1232
>U26026-1|AAA69069.1| 377|Apis mellifera long-wavelength rhodopsin
protein.
Length = 377
Score = 21.0 bits (42), Expect = 6.2
Identities = 8/18 (44%), Positives = 10/18 (55%)
Frame = -3
Query: 404 PFPINCHYEKSLLKWFLC 351
P INC+YE +L C
Sbjct: 108 PMVINCYYETWVLGPLFC 125
>AY703752-1|AAU12748.1| 152|Apis mellifera long-wavelength
rhodopsin protein.
Length = 152
Score = 21.0 bits (42), Expect = 6.2
Identities = 8/18 (44%), Positives = 10/18 (55%)
Frame = -3
Query: 404 PFPINCHYEKSLLKWFLC 351
P INC+YE +L C
Sbjct: 74 PMVINCYYETWVLGPLFC 91
>AM050259-1|CAJ18340.1| 683|Apis mellifera putative H3K9
methyltransferase protein.
Length = 683
Score = 21.0 bits (42), Expect = 6.2
Identities = 6/10 (60%), Positives = 8/10 (80%)
Frame = +2
Query: 149 VFGYWITCLE 178
V+G WI CL+
Sbjct: 588 VYGVWINCLD 597
>AY463910-1|AAR24352.1| 843|Apis mellifera metabotropic glutamate
receptor 1 protein.
Length = 843
Score = 20.6 bits (41), Expect = 8.2
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = -1
Query: 298 LFATKTSDIG*ASKLFSVWLLAGKSIKNFCILSLPLIPLPFQTSN 164
++A KT I + F+ G ++ CI+ L +P+ F T N
Sbjct: 690 VYAVKTRKI---PENFNESKFIGFTMYTTCIIWLAFVPIYFGTGN 731
>AB161181-1|BAD08343.1| 933|Apis mellifera metabotropic glutamate
receptor protein.
Length = 933
Score = 20.6 bits (41), Expect = 8.2
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = -1
Query: 298 LFATKTSDIG*ASKLFSVWLLAGKSIKNFCILSLPLIPLPFQTSN 164
++A KT I + F+ G ++ CI+ L +P+ F T N
Sbjct: 780 VYAVKTRKI---PENFNESKFIGFTMYTTCIIWLAFVPIYFGTGN 821
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,338
Number of Sequences: 438
Number of extensions: 2416
Number of successful extensions: 22
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11820384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)
- SilkBase 1999-2023 -