Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_P17
         (451 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) famil...    38   0.004
At2g17690.1 68415.m02048 F-box family protein contains F-box dom...    29   1.9  
At5g13820.1 68418.m01615 telomeric DNA-binding protein 1 (TBP1) ...    27   5.9  
At1g55300.1 68414.m06317 TATA-binding protein-associated factor ...    27   5.9  
At5g67480.2 68418.m08510 TAZ zinc finger family protein / BTB/PO...    27   7.7  
At5g67480.1 68418.m08509 TAZ zinc finger family protein / BTB/PO...    27   7.7  
At5g45275.1 68418.m05557 expressed protein Requires functional a...    27   7.7  
At2g40030.1 68415.m04919 DNA-directed RNA polymerase alpha subun...    27   7.7  
At2g13540.1 68415.m01493 mRNA cap-binding protein (ABH1) identic...    27   7.7  

>At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) family
           protein / RNA recognition motif (RRM)-containing protein
           contains Pfam profiles PF00076: RNA recognition motif.
           (a.k.a. RRM, RBD, or RNP domain), PF02136: Nuclear
           transport factor 2 (NTF2) domain
          Length = 1294

 Score = 37.5 bits (83), Expect = 0.004
 Identities = 31/124 (25%), Positives = 56/124 (45%), Gaps = 3/124 (2%)
 Frame = +3

Query: 87  EEFTRVFYKQVDNSRHLTSKLYLDTGLLVWNGNGISGNDKIQKFLMDLPASNHTLKSLDA 266
           +EF R +Y  + N+     KLY D   +  +  G+ G  ++  F +       +  S D+
Sbjct: 283 DEFARQYYNTLQNAPENLYKLYKDKSTI--SRPGLDGTMRV--FTLSKDLKWRSPGSFDS 338

Query: 267 QPISDVLVANKLT--YLIQACGDVTYQNEETKKPFQQTFLIVAVDGKWKIASDCFR-LQV 437
             I+ V   + L    L+   G +T+ NE   + F Q F +V  +  + + +D FR + +
Sbjct: 339 VKITSVTSQDSLKQGILVVVYGYLTF-NERPARHFTQVFFLVPQEKGYIVCTDMFRFVDI 397

Query: 438 PYGN 449
           P  N
Sbjct: 398 PEAN 401


>At2g17690.1 68415.m02048 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 421

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
 Frame = +3

Query: 78  ETAEEFTRVFYKQVDNSRHLTSKLYLDTGLLVWNG---NGI 191
           ETA EF RVF  +V    H    + +D  +  W G   NGI
Sbjct: 152 ETASEFKRVFLVRVQGGDHRVLVIGIDGKIRFWKGGIWNGI 192


>At5g13820.1 68418.m01615 telomeric DNA-binding protein 1 (TBP1)
           identical to telomeric DNA-binding protein 1
           [Arabidopsis thaliana] gi|13641340|gb|AAK31590
          Length = 640

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 17/80 (21%), Positives = 35/80 (43%)
 Frame = +3

Query: 156 DTGLLVWNGNGISGNDKIQKFLMDLPASNHTLKSLDAQPISDVLVANKLTYLIQACGDVT 335
           D   L+  GN +  ND++   L D+PA      S D++ +  VL        +    +  
Sbjct: 467 DEDYLINLGNSVENNDELVPHLSDIPADEQ--PSSDSRALVPVLALESDALALVPVNEKP 524

Query: 336 YQNEETKKPFQQTFLIVAVD 395
            + E +++  ++ F +  V+
Sbjct: 525 KRTELSQRRTRRPFSVTEVE 544


>At1g55300.1 68414.m06317 TATA-binding protein-associated factor
           TAFII55 family protein contains Pfam profile: PF04658
           TAFII55 protein conserved region
          Length = 203

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 177 NGNGISGNDKIQKFLMDLPASNHTLKSLD 263
           NG  + GND+    L+DLPA   + K+ D
Sbjct: 43  NGTFMIGNDEFPASLLDLPAVVESFKTYD 71


>At5g67480.2 68418.m08510 TAZ zinc finger family protein / BTB/POZ
           domain-containing protein contains Pfam PF00651 :
           BTB/POZ domain; contains Pfam PF02135 : TAZ zinc finger;
           simiar to Chain A, Taz2 Domain Of The Transcriptional
           Adaptor Protein Cbp (GI:11514507) [Homo sapiens];
           similar to (SP:Q09472) E1A-associated protein p300
           (SP:Q09472) [Homo sapiens];  similar to histone
           acetyltransferase HAC4 (GI:21105785) [Arabidopsis
           thaliana]
          Length = 383

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = -3

Query: 449 ISIRNLESETIRGYLPFPINCHYEKSLLKWFLCFFVLISN 330
           ISIR +  + +R ++ F  +  YEK  +  F+   +L+S+
Sbjct: 113 ISIRGVPHDAVRVFIRFLYSSCYEKEEMNEFIMHLLLLSH 152


>At5g67480.1 68418.m08509 TAZ zinc finger family protein / BTB/POZ
           domain-containing protein contains Pfam PF00651 :
           BTB/POZ domain; contains Pfam PF02135 : TAZ zinc finger;
           simiar to Chain A, Taz2 Domain Of The Transcriptional
           Adaptor Protein Cbp (GI:11514507) [Homo sapiens];
           similar to (SP:Q09472) E1A-associated protein p300
           (SP:Q09472) [Homo sapiens];  similar to histone
           acetyltransferase HAC4 (GI:21105785) [Arabidopsis
           thaliana]
          Length = 372

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = -3

Query: 449 ISIRNLESETIRGYLPFPINCHYEKSLLKWFLCFFVLISN 330
           ISIR +  + +R ++ F  +  YEK  +  F+   +L+S+
Sbjct: 102 ISIRGVPHDAVRVFIRFLYSSCYEKEEMNEFIMHLLLLSH 141


>At5g45275.1 68418.m05557 expressed protein Requires functional
           assignment.
          Length = 570

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = -2

Query: 135 DGGCCLLVCKTL**ILQLSHKHYQHFLLLHQDIFIFFVLXF 13
           D GCC     T   +  L  +H   FLL   D +++++  F
Sbjct: 323 DDGCCCTKVITRNQLGMLGEEHPLSFLLCRSDFWLYYIAYF 363


>At2g40030.1 68415.m04919 DNA-directed RNA polymerase alpha subunit
           family protein contains InterPro accession IPR000722:
           RNA polymerase, alpha subunit
          Length = 888

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = +3

Query: 234 ASNHTLKSLDAQPISDVLVANKLTYLIQACGDVTYQNEETKKPFQQTFL 380
           A+N  LKS   + + D+   + +T L+Q  G +  Q  + KK + +T +
Sbjct: 621 AANFMLKSYSIRNLIDIKSNSAITKLVQQTGFLGLQLSDKKKFYTKTLV 669


>At2g13540.1 68415.m01493 mRNA cap-binding protein (ABH1) identical
           to mRNA cap binding protein [Arabidopsis thaliana]
           GI:15192738; contains Pfam profile PF02854: MIF4G
           domain; identical to cDNA nuclear cap-binding protein
           CBP80 GI:8515770
          Length = 848

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +2

Query: 326 RCYLSKRRNKETISANFSHSGS*WEMEDSL 415
           + YLS R+N  T   NF H+G   E E SL
Sbjct: 185 QAYLSIRKNSSTSGLNFFHNG---EFESSL 211


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,068,584
Number of Sequences: 28952
Number of extensions: 203072
Number of successful extensions: 553
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 553
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 732537840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)