Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_P15
(655 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom... 31 0.19
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large... 28 1.4
SPCC1223.12c |meu10||GPI anchored cell surface protein |Schizosa... 28 1.4
SPBC28F2.08c |||HRD ubiquitin ligase complex subunit |Schizosacc... 27 1.8
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 27 3.1
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 4.1
SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit |Schizosa... 26 5.5
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb... 25 7.2
SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC su... 25 7.2
SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces... 25 7.2
SPAC343.02 |img1||mitochondrial ribosomal protein subunit L19|Sc... 25 9.5
SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr 1|||Ma... 25 9.5
>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 986
Score = 30.7 bits (66), Expect = 0.19
Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = +1
Query: 448 VAELLKFIYNV-VENGWPIFNLPPLEPLVLEYFELP 552
VA KF+ N+ V N P+ LPP PL+++Y +LP
Sbjct: 332 VALQSKFVQNLFVSNTVPVPPLPPCIPLLVQYTQLP 367
>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1405
Score = 27.9 bits (59), Expect = 1.4
Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 2/83 (2%)
Frame = +1
Query: 259 NILKLSNLRMKLFIILTLCALAAAKPWEHTVLNDVIPEPSAPEEPPQLESLHTPQLPQTV 438
N + L N + L + + L +PW N+ + P + +LH PQ +
Sbjct: 451 NDVVLFNRQPSLHKLSIMAHLVKVRPWRTLRFNECVCGPYNADFDGDEMNLHVPQTEEAK 510
Query: 439 EELVAELLKFIYNVV--ENGWPI 501
E + EL+ N+V NG PI
Sbjct: 511 TEAL-ELMGIKNNLVSPRNGEPI 532
>SPCC1223.12c |meu10||GPI anchored cell surface protein
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 416
Score = 27.9 bits (59), Expect = 1.4
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +3
Query: 189 ISIVTSNISTTLGNEYLKELDTWKYIEAVQFKDEVIYH 302
IS+ T++ + N YL+E+D Y+E+V+ K V Y+
Sbjct: 157 ISLNTTDTMVIVNNNYLREVD-MPYLESVESKFYVSYN 193
>SPBC28F2.08c |||HRD ubiquitin ligase complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 713
Score = 27.5 bits (58), Expect = 1.8
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +1
Query: 349 VLNDVIPEPSAPEEPPQLESLHTPQLPQTVE 441
+L+ P+ P EPP L+ TPQ P E
Sbjct: 612 ILSPAGPDSQLPPEPPTLQVDRTPQQPDPQE 642
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 26.6 bits (56), Expect = 3.1
Identities = 19/77 (24%), Positives = 32/77 (41%)
Frame = +1
Query: 322 AAAKPWEHTVLNDVIPEPSAPEEPPQLESLHTPQLPQTVEELVAELLKFIYNVVENGWPI 501
A+ K + +V+ +P+P A P+ S+H P E+ + + VV P
Sbjct: 500 ASQKAAQPSVITPSVPQPPAAPVVPEAPSVHQPPAAPVAPEVPSAPQRPAAPVVPEA-PS 558
Query: 502 FNLPPLEPLVLEYFELP 552
P P+V E +P
Sbjct: 559 VPQRPAVPVVPEALSVP 575
>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 860
Score = 26.2 bits (55), Expect = 4.1
Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Frame = +1
Query: 340 EHTVLNDV---IPEPSAPEEPPQLESLHTPQLPQTVEELVAELLK 465
EH+ + D +PEP P P S+H P + E LK
Sbjct: 397 EHSNITDEAVSLPEPVYPNAPTSAVSVHNPTISDEAEPTERAFLK 441
>SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 589
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 517 LEPLVLEYFELPINAGIINVELKL 588
L PLVLE FEL A + ++L L
Sbjct: 564 LHPLVLEKFELTSAASAVEIDLTL 587
>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 331
Score = 25.4 bits (53), Expect = 7.2
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 349 VLNDVIPEPSAPEEPPQLESLHTPQLP 429
+LN+++PE P EPP L + P+ P
Sbjct: 93 LLNELVPEEPLPREPP-LPNEPVPEEP 118
>SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC
subunit Psc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 962
Score = 25.4 bits (53), Expect = 7.2
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = +3
Query: 159 IDYVNRFHGAISIVTSNISTTLGNEYLKELDTWKYIEAVQFKDE-VIYHFDPLRPRGCET 335
+D + + ++ ++I E+LK ++ +AV KDE VI+ R GC +
Sbjct: 683 LDSIPALKEDLKLLVTDICDQTVTEFLKNFGSFNIQDAVITKDEFVIFEACLTRIEGCTS 742
Query: 336 MGAYS 350
+ +S
Sbjct: 743 LKDFS 747
>SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 844
Score = 25.4 bits (53), Expect = 7.2
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = -3
Query: 185 AMEPVDVINDNFLNQLVDNSVDAATTDNSRNVGN 84
+ME I N N+ D+SVD AT D S VGN
Sbjct: 176 SMESSFSIVQNLTNK--DSSVDTATYDFSAEVGN 207
>SPAC343.02 |img1||mitochondrial ribosomal protein subunit
L19|Schizosaccharomyces pombe|chr 1|||Manual
Length = 182
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +1
Query: 496 PIFNLPPLEPLVLEYFE 546
P F LPP+E LV +Y E
Sbjct: 160 PRFRLPPVESLVRKYIE 176
>SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 835
Score = 25.0 bits (52), Expect = 9.5
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +1
Query: 340 EHTVLNDVIPEPSAPEEPPQLESLHTPQ-LPQTVEELVAEL 459
EH + +P PS P + E L+ P+ P VE L E+
Sbjct: 106 EHALYGSFLPTPSQELFPLEEEKLYAPENSPGFVEVLEGEI 146
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,438,180
Number of Sequences: 5004
Number of extensions: 48538
Number of successful extensions: 163
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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