Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_P15
(655 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46240| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.47
SB_17008| Best HMM Match : Galactosyl_T (HMM E-Value=3.6e-30) 31 1.1
SB_23672| Best HMM Match : PHD (HMM E-Value=0.00049) 30 1.4
SB_20246| Best HMM Match : RVT_1 (HMM E-Value=1.4e-30) 29 4.4
SB_16016| Best HMM Match : RVT_1 (HMM E-Value=9.7e-08) 29 4.4
SB_40710| Best HMM Match : RVT_1 (HMM E-Value=1.7e-25) 29 4.4
SB_23051| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_16438| Best HMM Match : HMG_box (HMM E-Value=7.2e-31) 29 4.4
SB_16404| Best HMM Match : RVT_1 (HMM E-Value=9.7e-08) 29 4.4
SB_7017| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_57442| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_31243| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_2424| Best HMM Match : RVT_1 (HMM E-Value=6.2e-18) 28 7.6
>SB_46240| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 177
Score = 31.9 bits (69), Expect = 0.47
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +3
Query: 138 KLIEEVIIDYVNRFHGAISIVTSNISTTLGNEYLKELDTWKYIEAVQF 281
KL+++ ++ Y F+G SIV N + G L T K IE V+F
Sbjct: 46 KLLDKGVVIYPESFNGPYSIVDINCADEYGKTPLHHATTGKRIEFVEF 93
>SB_17008| Best HMM Match : Galactosyl_T (HMM E-Value=3.6e-30)
Length = 508
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Frame = +2
Query: 86 FQHFWSYRWWQHRRYYQQAD*GS----YH*LRQQVPWRYFYCYFKHFNY 220
+++++ YR++ RYY D + Y+ R P+RY+Y Y ++ Y
Sbjct: 459 YRYYYPYRYYYPYRYYPPIDTTTRYRYYYPYRYYPPYRYYYPYRYYYPY 507
>SB_23672| Best HMM Match : PHD (HMM E-Value=0.00049)
Length = 370
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = +1
Query: 301 ILTLCALAAAKPWEHTVLNDVIPEPSAPEEPPQLESLHTPQLPQTVEELVAEL 459
++ +C + K WEH V ++ E AP+ + P PQ + L+ EL
Sbjct: 189 LMIMCGIC--KFWEHAVCYGILQEEQAPDFHVCAKCCRKPGQPQCTDALLGEL 239
>SB_20246| Best HMM Match : RVT_1 (HMM E-Value=1.4e-30)
Length = 1191
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 5/35 (14%)
Frame = +1
Query: 409 LHTPQLPQTVEELVAEL-----LKFIYNVVENGWP 498
LH P + +EE+ +EL LK + + V+NGWP
Sbjct: 879 LHLPASDKRLEEIRSELKRDDALKVVMHYVQNGWP 913
>SB_16016| Best HMM Match : RVT_1 (HMM E-Value=9.7e-08)
Length = 890
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 5/35 (14%)
Frame = +1
Query: 409 LHTPQLPQTVEELVAEL-----LKFIYNVVENGWP 498
LH P + +EE+ +EL LK + + V+NGWP
Sbjct: 734 LHLPASDKRLEEIRSELKRDDTLKVVMHYVQNGWP 768
>SB_40710| Best HMM Match : RVT_1 (HMM E-Value=1.7e-25)
Length = 736
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 5/35 (14%)
Frame = +1
Query: 409 LHTPQLPQTVEELVAEL-----LKFIYNVVENGWP 498
LH P + +EE+ +EL LK + + V+NGWP
Sbjct: 455 LHLPASDKRLEEIRSELKRDDALKVVMHYVQNGWP 489
>SB_23051| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2141
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 5/35 (14%)
Frame = +1
Query: 409 LHTPQLPQTVEELVAEL-----LKFIYNVVENGWP 498
LH P + +EE+ +EL LK + + V+NGWP
Sbjct: 1533 LHLPASDKRLEEIRSELKRDDTLKVVMHYVQNGWP 1567
>SB_16438| Best HMM Match : HMG_box (HMM E-Value=7.2e-31)
Length = 690
Score = 28.7 bits (61), Expect = 4.4
Identities = 21/82 (25%), Positives = 33/82 (40%), Gaps = 3/82 (3%)
Frame = -2
Query: 618 VSKTKGDGIFQLEFDVNNSSINR*FEV--F*NQRLKRRKIENWPAILHYIVNELQEFCNQ 445
+SKT + FQ+ DV F + +K I++W A + + FC
Sbjct: 95 ISKTLRERHFQIANDVVKKFPRLKFMIDHIAKPNIKEGAIDSWKAGITELAKNPNVFCKM 154
Query: 444 LFYGL-WQLWSVEGLKLWGLFR 382
YG W + V G G+F+
Sbjct: 155 CVYGSDWPVCKVAGASYVGVFK 176
>SB_16404| Best HMM Match : RVT_1 (HMM E-Value=9.7e-08)
Length = 765
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 5/35 (14%)
Frame = +1
Query: 409 LHTPQLPQTVEELVAEL-----LKFIYNVVENGWP 498
LH P + +EE+ +EL LK + + V+NGWP
Sbjct: 716 LHLPASDKRLEEIRSELKRDDTLKVVMHYVQNGWP 750
>SB_7017| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1017
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 5/35 (14%)
Frame = +1
Query: 409 LHTPQLPQTVEELVAEL-----LKFIYNVVENGWP 498
LH P + +EE+ +EL LK + + V+NGWP
Sbjct: 624 LHLPTSDKRLEEIRSELKRDDALKVVMHYVQNGWP 658
>SB_57442| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 552
Score = 28.3 bits (60), Expect = 5.8
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Frame = +3
Query: 228 NEYLKELDTW--KYIEAV--QFKDEVIYHFDPLRPRGCET 335
NE + + W +Y V +F DE YHF P P GC T
Sbjct: 437 NEIRSDFNFWSCRYFLGVFFEFSDEHPYHFYPEEPPGCCT 476
>SB_31243| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 317
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = -2
Query: 531 NQRLKRRKIENWPAILHYIVNELQEFCNQLFYGL 430
+Q L R K+E +LH V +FCN L YGL
Sbjct: 145 SQFLPRDKLE---MVLHAFVTSRIDFCNGLLYGL 175
>SB_2424| Best HMM Match : RVT_1 (HMM E-Value=6.2e-18)
Length = 657
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = -2
Query: 531 NQRLKRRKIENWPAILHYIVNELQEFCNQLFYGL 430
+Q L R K+E +LH V +FCN L YGL
Sbjct: 485 SQFLPRDKLE---MVLHAFVTSRIDFCNGLLYGL 515
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,437,897
Number of Sequences: 59808
Number of extensions: 350240
Number of successful extensions: 999
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 996
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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