Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_P15
         (655 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC117283-1|AAI17284.1|  676|Homo sapiens cancer susceptibility c...    32   2.1  
BC117281-1|AAI17282.1|  676|Homo sapiens cancer susceptibility c...    32   2.1  
BC057795-1|AAH57795.1|  716|Homo sapiens CASC1 protein protein.        32   2.1  
BC047415-1|AAH47415.2|  676|Homo sapiens CASC1 protein protein.        32   2.1  
BC028415-1|AAH28415.1|  690|Homo sapiens CASC1 protein protein.        32   2.1  
AY423543-1|AAQ93499.1|  716|Homo sapiens lung adenoma susceptibi...    32   2.1  
AK023181-1|BAB14450.1|  857|Homo sapiens protein ( Homo sapiens ...    31   3.6  

>BC117283-1|AAI17284.1|  676|Homo sapiens cancer susceptibility
           candidate 1 protein.
          Length = 676

 Score = 31.9 bits (69), Expect = 2.1
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = +1

Query: 337 WEHTVLNDVIPEPSAPEEPPQLESLHTPQLPQTVEELVAELLKFIYNVVEN-GWPIFNLP 513
           W+H +  D  P+PS  +E     SL   +  +T EE++ E  K + N++E   + +   P
Sbjct: 55  WKHYIQCDGSPDPSVAQEMNTFISLWKEKTNETFEEVI-EKSKVVLNLIEKLKFILLETP 113

Query: 514 PLE 522
           P +
Sbjct: 114 PCD 116


>BC117281-1|AAI17282.1|  676|Homo sapiens cancer susceptibility
           candidate 1 protein.
          Length = 676

 Score = 31.9 bits (69), Expect = 2.1
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = +1

Query: 337 WEHTVLNDVIPEPSAPEEPPQLESLHTPQLPQTVEELVAELLKFIYNVVEN-GWPIFNLP 513
           W+H +  D  P+PS  +E     SL   +  +T EE++ E  K + N++E   + +   P
Sbjct: 55  WKHYIQCDGSPDPSVAQEMNTFISLWKEKTNETFEEVI-EKSKVVLNLIEKLKFILLETP 113

Query: 514 PLE 522
           P +
Sbjct: 114 PCD 116


>BC057795-1|AAH57795.1|  716|Homo sapiens CASC1 protein protein.
          Length = 716

 Score = 31.9 bits (69), Expect = 2.1
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = +1

Query: 337 WEHTVLNDVIPEPSAPEEPPQLESLHTPQLPQTVEELVAELLKFIYNVVEN-GWPIFNLP 513
           W+H +  D  P+PS  +E     SL   +  +T EE++ E  K + N++E   + +   P
Sbjct: 95  WKHYIQCDGSPDPSVAQEMNTFISLWKEKTNETFEEVI-EKSKVVLNLIEKLKFILLETP 153

Query: 514 PLE 522
           P +
Sbjct: 154 PCD 156


>BC047415-1|AAH47415.2|  676|Homo sapiens CASC1 protein protein.
          Length = 676

 Score = 31.9 bits (69), Expect = 2.1
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = +1

Query: 337 WEHTVLNDVIPEPSAPEEPPQLESLHTPQLPQTVEELVAELLKFIYNVVEN-GWPIFNLP 513
           W+H +  D  P+PS  +E     SL   +  +T EE++ E  K + N++E   + +   P
Sbjct: 55  WKHYIQCDGSPDPSVAQEMNTFISLWKEKTNETFEEVI-EKSKVVLNLIEKLKFILLETP 113

Query: 514 PLE 522
           P +
Sbjct: 114 PCD 116


>BC028415-1|AAH28415.1|  690|Homo sapiens CASC1 protein protein.
          Length = 690

 Score = 31.9 bits (69), Expect = 2.1
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = +1

Query: 337 WEHTVLNDVIPEPSAPEEPPQLESLHTPQLPQTVEELVAELLKFIYNVVEN-GWPIFNLP 513
           W+H +  D  P+PS  +E     SL   +  +T EE++ E  K + N++E   + +   P
Sbjct: 159 WKHYIQCDGSPDPSVAQEMNTFISLWKEKTNETFEEVI-EKSKVVLNLIEKLKFILLETP 217

Query: 514 PLE 522
           P +
Sbjct: 218 PCD 220


>AY423543-1|AAQ93499.1|  716|Homo sapiens lung adenoma
           susceptibility 1-like protein protein.
          Length = 716

 Score = 31.9 bits (69), Expect = 2.1
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = +1

Query: 337 WEHTVLNDVIPEPSAPEEPPQLESLHTPQLPQTVEELVAELLKFIYNVVEN-GWPIFNLP 513
           W+H +  D  P+PS  +E     SL   +  +T EE++ E  K + N++E   + +   P
Sbjct: 95  WKHYIQCDGSPDPSVAQEMNTFISLWKEKTNETFEEVI-EKSKVVLNLIEKLKFILLETP 153

Query: 514 PLE 522
           P +
Sbjct: 154 PCD 156


>AK023181-1|BAB14450.1|  857|Homo sapiens protein ( Homo sapiens
           cDNA FLJ13119 fis, clone NT2RP3002671, weakly similar to
           ELONGATION FACTOR 2. ).
          Length = 857

 Score = 31.1 bits (67), Expect = 3.6
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
 Frame = +1

Query: 253 PGNILKLSNLRMKLFIILTLCALAAAKP-----WEHTVLNDVIPEPSAPEEPPQL 402
           PGN+L +  L+  +    TLC+L +  P     +E T +  V  EP  P E P+L
Sbjct: 316 PGNVLGIGGLQDFVLKSATLCSLPSCPPFIPLNFEATPIVRVAVEPKHPSEMPRL 370


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,456,878
Number of Sequences: 237096
Number of extensions: 1669871
Number of successful extensions: 4788
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4779
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7310122300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)