Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_P15
         (655 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    26   0.28 
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    22   6.0  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   7.9  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          21   7.9  

>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 26.2 bits (55), Expect = 0.28
 Identities = 17/78 (21%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
 Frame = +1

Query: 424 LPQT-VEELVAELLKFIYNVVENGWPIFNLPPLEPLVLEYFELPINAGIINVELKLKDAI 600
           LPQ    + +AE ++     +  G   F + P+EPL ++  ++  + G + +  + K+  
Sbjct: 35  LPQKEYNQCIAEAVRDAVVSLAGGLKSFKILPIEPLAVDSVKIGESQGSVTLRQEYKNIK 94

Query: 601 AFGF-GNLIVHKIDLNVD 651
            +G   NL +   +++ D
Sbjct: 95  LYGLTKNLEIKNYNIDWD 112


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +3

Query: 576 RTQVERCHRLW 608
           R QV++C RLW
Sbjct: 125 RMQVDKCGRLW 135


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +3

Query: 576 RTQVERCHRLW 608
           R QV+ C RLW
Sbjct: 250 RIQVDECDRLW 260


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 12/32 (37%), Positives = 14/32 (43%)
 Frame = +1

Query: 496 PIFNLPPLEPLVLEYFELPINAGIINVELKLK 591
           P   LPPL P       LP      NVE+ L+
Sbjct: 97  PTRKLPPLHPHTAMVTHLPQTLTSENVEILLE 128


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,067
Number of Sequences: 438
Number of extensions: 3705
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)