Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_P14
(639 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26A3.04 |rpl2002|rpl20, rpl20-2|60S ribosomal protein L20|Sc... 142 4e-35
SPAC3A12.10 |rpl2001|rpl20-1, rpl20, yl17b, rpl18a-2|60S ribosom... 142 4e-35
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 29 0.57
SPBC1718.07c |zfs1|moc4|transcription factor Zfs1 |Schizosacchar... 28 1.3
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz... 26 4.0
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces... 25 7.0
SPBC8D2.05c |sfi1||spindle pole body protein Sfi1|Schizosaccharo... 25 7.0
SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces ... 25 7.0
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch... 25 7.0
>SPAC26A3.04 |rpl2002|rpl20, rpl20-2|60S ribosomal protein
L20|Schizosaccharomyces pombe|chr 1|||Manual
Length = 176
Score = 142 bits (344), Expect = 4e-35
Identities = 75/153 (49%), Positives = 94/153 (61%), Gaps = 4/153 (2%)
Frame = +1
Query: 142 YKMXIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVXXXXXXXXXXXXXXNFGIWLRYESR 321
++M +F+P+ VAKSR+WYFL+ + K KK TGEIV FGIW+RY+SR
Sbjct: 24 FRMRLFAPNESVAKSRYWYFLKMINKVKKATGEIVAINEISEPKPLKAKVFGIWIRYDSR 83
Query: 322 SGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIK-VEVIKAAACRRPQVKQFH 498
SG HNMY+E+RD + GAV Y DM ARHRAR SI+I+K VEV K RR VKQ
Sbjct: 84 SGTHNMYKEFRDTTRVGAVEAMYADMAARHRARFRSIRILKVVEVEKKEDVRRNYVKQLL 143
Query: 499 NSTIRFPLPKR---VHHYKRLNTFAYKRPSTYF 588
N ++FPLP R V FA RPST++
Sbjct: 144 NPHLKFPLPHRRTGVVGLAGKKVFAPHRPSTFY 176
Score = 27.9 bits (59), Expect = 1.3
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +3
Query: 93 VIGRKLPSEHXPKPPL 140
V+GRK+P+EH P P L
Sbjct: 8 VVGRKVPTEHEPVPKL 23
>SPAC3A12.10 |rpl2001|rpl20-1, rpl20, yl17b, rpl18a-2|60S ribosomal
protein L20a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 176
Score = 142 bits (344), Expect = 4e-35
Identities = 75/153 (49%), Positives = 94/153 (61%), Gaps = 4/153 (2%)
Frame = +1
Query: 142 YKMXIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVXXXXXXXXXXXXXXNFGIWLRYESR 321
++M +F+P+ VAKSR+WYFL+ + K KK TGEIV FGIW+RY+SR
Sbjct: 24 FRMRLFAPNESVAKSRYWYFLKMINKVKKATGEIVAINEISEPKPLKAKVFGIWIRYDSR 83
Query: 322 SGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIK-VEVIKAAACRRPQVKQFH 498
SG HNMY+E+RD + GAV Y DM ARHRAR SI+I+K VEV K RR VKQ
Sbjct: 84 SGTHNMYKEFRDTTRVGAVEAMYADMAARHRARFRSIRILKVVEVEKKEDVRRNYVKQLL 143
Query: 499 NSTIRFPLPKR---VHHYKRLNTFAYKRPSTYF 588
N ++FPLP R V FA RPST++
Sbjct: 144 NPHLKFPLPHRRTGVVGLAGKKVFAPHRPSTFY 176
Score = 27.9 bits (59), Expect = 1.3
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +3
Query: 93 VIGRKLPSEHXPKPPL 140
V+GRK+P+EH P P L
Sbjct: 8 VVGRKVPTEHEPVPKL 23
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1385
Score = 29.1 bits (62), Expect = 0.57
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Frame = +2
Query: 158 SLRIQLSPNLVSGIS*DNLRSSRRPLVKLSLLRKFQRK---APSRLRTLVSGYAMSL 319
S ++ P++V S D+ + SRRP + S RKF K PS ++L G SL
Sbjct: 295 SPKVSKRPSIVRQDSHDSNKLSRRPTINTSFDRKFSPKLTRTPSLTKSLDPGTPTSL 351
>SPBC1718.07c |zfs1|moc4|transcription factor Zfs1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 404
Score = 27.9 bits (59), Expect = 1.3
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = -3
Query: 400 PYLYSTE*QLHLHSGHGIHGTCCVHPNETHSVARYQSS*S*WGFSLEF 257
P L S+ +LHSG HG HP+ S+ S S SL+F
Sbjct: 125 PSLLSSNATSYLHSGSSPHGNTSNHPSPISSLESLPSRSSTGSGSLDF 172
>SPAC22E12.11c |set3||histone lysine methyltransferase
Set3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 26.2 bits (55), Expect = 4.0
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +3
Query: 378 HSVL*RYGS*TQSPSSLNTDHQSGSNQGCCVSPSTGQTVPQQH 506
HS R G+ T + +L + + SN G + TG T+P H
Sbjct: 99 HSASPRQGNNTGANGALFSQSTNSSNSGSYRNSVTGATLPNAH 141
>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1441
Score = 25.4 bits (53), Expect = 7.0
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -1
Query: 237 TSGLLELLKLSQEIPETRFGDNWIRRENXH 148
TSG L LL E PE+ G+ + R + H
Sbjct: 1274 TSGNLRLLAYDPENPESHSGERLVTRGDFH 1303
>SPBC8D2.05c |sfi1||spindle pole body protein
Sfi1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 840
Score = 25.4 bits (53), Expect = 7.0
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +1
Query: 166 DPIVAKSRFWYFLRQLKKFK 225
D ++ RFWY+L + K F+
Sbjct: 476 DRLIVTFRFWYYLMKAKSFQ 495
>SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 409
Score = 25.4 bits (53), Expect = 7.0
Identities = 9/23 (39%), Positives = 11/23 (47%)
Frame = -1
Query: 519 WESDGAVVELFDLWTATRSSLDY 451
WE G V+ + W A S DY
Sbjct: 145 WEKLGVTVDTYPYWDAKNRSFDY 167
>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 515
Score = 25.4 bits (53), Expect = 7.0
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = +3
Query: 399 GS*TQSPSSLNTDHQSGSNQGCCVSPSTGQTVPQQHHQIPIAQTCAPLQET 551
G+ +QSP+S + SNQ +SPST + HH + +P T
Sbjct: 93 GNSSQSPTSPHP-----SNQPAMLSPSTAASQHHHHHSSSSSYAVSPTSPT 138
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,526,276
Number of Sequences: 5004
Number of extensions: 47506
Number of successful extensions: 126
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -