Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_P14
         (639 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X75339-1|CAA53089.1|  177|Drosophila melanogaster ribosomal prot...   229   2e-60
AY071222-1|AAL48844.1|  177|Drosophila melanogaster RE26382p pro...   229   2e-60
AE013599-2503|AAF57838.1|  177|Drosophila melanogaster CG6510-PA...   229   2e-60

>X75339-1|CAA53089.1|  177|Drosophila melanogaster ribosomal protein
           L18a protein.
          Length = 177

 Score =  229 bits (560), Expect = 2e-60
 Identities = 107/151 (70%), Positives = 118/151 (78%)
 Frame = +1

Query: 136 PXYKMXIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVXXXXXXXXXXXXXXNFGIWLRYE 315
           P YKM IF+PD IVAKSRFWYFLRQLKKFKKTTGEIV              NFGIWLRY+
Sbjct: 26  PLYKMRIFAPDNIVAKSRFWYFLRQLKKFKKTTGEIVSIKQVYETSPVKIKNFGIWLRYD 85

Query: 316 SRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIKVEVIKAAACRRPQVKQF 495
           SRSG HNMYREYRDL+VGGAVTQCYRDMGARHRARAHSIQIIKV+ I AA  RR  VKQF
Sbjct: 86  SRSGTHNMYREYRDLTVGGAVTQCYRDMGARHRARAHSIQIIKVDSIPAAKTRRVHVKQF 145

Query: 496 HNSTIRFPLPKRVHHYKRLNTFAYKRPSTYF 588
           H+S I+FPL +RVHH      F++++P TYF
Sbjct: 146 HDSKIKFPLVQRVHHKGNRKLFSFRKPRTYF 176



 Score = 35.5 bits (78), Expect = 0.061
 Identities = 16/27 (59%), Positives = 19/27 (70%)
 Frame = +3

Query: 60  MQAKGQLXAXXVIGRKLPSEHXPKPPL 140
           M+AKG L    V+GRKLPSE  P+ PL
Sbjct: 1   MRAKGLLKEYEVVGRKLPSEKEPQTPL 27


>AY071222-1|AAL48844.1|  177|Drosophila melanogaster RE26382p
           protein.
          Length = 177

 Score =  229 bits (560), Expect = 2e-60
 Identities = 107/151 (70%), Positives = 118/151 (78%)
 Frame = +1

Query: 136 PXYKMXIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVXXXXXXXXXXXXXXNFGIWLRYE 315
           P YKM IF+PD IVAKSRFWYFLRQLKKFKKTTGEIV              NFGIWLRY+
Sbjct: 26  PLYKMRIFAPDNIVAKSRFWYFLRQLKKFKKTTGEIVSIKQVYETSPVKIKNFGIWLRYD 85

Query: 316 SRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIKVEVIKAAACRRPQVKQF 495
           SRSG HNMYREYRDL+VGGAVTQCYRDMGARHRARAHSIQIIKV+ I AA  RR  VKQF
Sbjct: 86  SRSGTHNMYREYRDLTVGGAVTQCYRDMGARHRARAHSIQIIKVDSIPAAKTRRVHVKQF 145

Query: 496 HNSTIRFPLPKRVHHYKRLNTFAYKRPSTYF 588
           H+S I+FPL +RVHH      F++++P TYF
Sbjct: 146 HDSKIKFPLVQRVHHKGNRKLFSFRKPRTYF 176



 Score = 35.5 bits (78), Expect = 0.061
 Identities = 16/27 (59%), Positives = 19/27 (70%)
 Frame = +3

Query: 60  MQAKGQLXAXXVIGRKLPSEHXPKPPL 140
           M+AKG L    V+GRKLPSE  P+ PL
Sbjct: 1   MRAKGLLKEYEVVGRKLPSEKEPQTPL 27


>AE013599-2503|AAF57838.1|  177|Drosophila melanogaster CG6510-PA
           protein.
          Length = 177

 Score =  229 bits (560), Expect = 2e-60
 Identities = 107/151 (70%), Positives = 118/151 (78%)
 Frame = +1

Query: 136 PXYKMXIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVXXXXXXXXXXXXXXNFGIWLRYE 315
           P YKM IF+PD IVAKSRFWYFLRQLKKFKKTTGEIV              NFGIWLRY+
Sbjct: 26  PLYKMRIFAPDNIVAKSRFWYFLRQLKKFKKTTGEIVSIKQVYETSPVKIKNFGIWLRYD 85

Query: 316 SRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIKVEVIKAAACRRPQVKQF 495
           SRSG HNMYREYRDL+VGGAVTQCYRDMGARHRARAHSIQIIKV+ I AA  RR  VKQF
Sbjct: 86  SRSGTHNMYREYRDLTVGGAVTQCYRDMGARHRARAHSIQIIKVDSIPAAKTRRVHVKQF 145

Query: 496 HNSTIRFPLPKRVHHYKRLNTFAYKRPSTYF 588
           H+S I+FPL +RVHH      F++++P TYF
Sbjct: 146 HDSKIKFPLVQRVHHKGNRKLFSFRKPRTYF 176



 Score = 35.5 bits (78), Expect = 0.061
 Identities = 16/27 (59%), Positives = 19/27 (70%)
 Frame = +3

Query: 60  MQAKGQLXAXXVIGRKLPSEHXPKPPL 140
           M+AKG L    V+GRKLPSE  P+ PL
Sbjct: 1   MRAKGLLKEYEVVGRKLPSEKEPQTPL 27


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,111,204
Number of Sequences: 53049
Number of extensions: 565343
Number of successful extensions: 1774
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1774
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2682985500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)