Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_P14
         (639 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g34480.1 68415.m04233 60S ribosomal protein L18A (RPL18aB)         146   1e-35
At1g29965.1 68414.m03664 60S ribosomal protein L18A  (RPL18aA) JRW    145   3e-35
At3g14600.1 68416.m01849 60S ribosomal protein L18A (RPL18aC) si...   141   3e-34
At2g35200.1 68415.m04317 expressed protein                             30   1.1  
At3g57460.1 68416.m06397 expressed protein weak similarity to SP...    29   2.6  

>At2g34480.1 68415.m04233 60S ribosomal protein L18A (RPL18aB)
          Length = 178

 Score =  146 bits (354), Expect = 1e-35
 Identities = 64/127 (50%), Positives = 86/127 (67%)
 Frame = +1

Query: 142 YKMXIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVXXXXXXXXXXXXXXNFGIWLRYESR 321
           Y+M +++ + + AKS+FWYFLR+LKK KK+ G+++              NFGIWLRY+SR
Sbjct: 27  YRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIYEKNPTTIKNFGIWLRYQSR 86

Query: 322 SGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIKVEVIKAAACRRPQVKQFHN 501
           +G HNMY+EYRD ++ GAV Q Y +M +RHR R   IQIIK   + A  C+R   KQFHN
Sbjct: 87  TGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQIIKTATVPAKLCKRESTKQFHN 146

Query: 502 STIRFPL 522
           S I+FPL
Sbjct: 147 SKIKFPL 153


>At1g29965.1 68414.m03664 60S ribosomal protein L18A  (RPL18aA) JRW
          Length = 178

 Score =  145 bits (351), Expect = 3e-35
 Identities = 62/127 (48%), Positives = 87/127 (68%)
 Frame = +1

Query: 142 YKMXIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVXXXXXXXXXXXXXXNFGIWLRYESR 321
           Y+M +++ + ++AKS+FWY+LR+ KK KK+ G+++              NFGIWLRY+SR
Sbjct: 27  YRMKLWATNEVLAKSKFWYYLRRQKKVKKSNGQMLAINEIFEKNPTTIKNFGIWLRYQSR 86

Query: 322 SGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIKVEVIKAAACRRPQVKQFHN 501
           +G HNMY+EYRD ++ GAV Q Y +M +RHR R   IQIIK   + A+ C+R   KQFHN
Sbjct: 87  TGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQIIKTATVPASLCKRESTKQFHN 146

Query: 502 STIRFPL 522
           S I+FPL
Sbjct: 147 SKIKFPL 153


>At3g14600.1 68416.m01849 60S ribosomal protein L18A (RPL18aC)
           similar to GB:CAA08791 from [Podocoryne carnea]
          Length = 178

 Score =  141 bits (342), Expect = 3e-34
 Identities = 61/127 (48%), Positives = 84/127 (66%)
 Frame = +1

Query: 142 YKMXIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVXXXXXXXXXXXXXXNFGIWLRYESR 321
           Y+M ++  + + AKS+FWYF+R+LKK KK+ G+++              N+GIWLRY+SR
Sbjct: 27  YRMKLWGRNEVCAKSKFWYFMRKLKKVKKSNGQMLAINEIFEKNPTTIKNYGIWLRYQSR 86

Query: 322 SGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIKVEVIKAAACRRPQVKQFHN 501
           +G HNMY+EYRD ++ G V Q Y +M +RHR R   IQIIK   + A  C+R   KQFHN
Sbjct: 87  TGYHNMYKEYRDTTLNGGVEQMYTEMASRHRVRFPCIQIIKTATVPAKLCKREITKQFHN 146

Query: 502 STIRFPL 522
           S I+FPL
Sbjct: 147 SKIKFPL 153


>At2g35200.1 68415.m04317 expressed protein
          Length = 201

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +1

Query: 154 IFSPDPIVAKSRFWYFLRQLKKFKKT 231
           +FSP P+ +K   WYF   +K F+++
Sbjct: 160 LFSPTPVTSKGNGWYFPSPIKVFRQS 185


>At3g57460.1 68416.m06397 expressed protein weak similarity to
           SP|O43847 Nardilysin precursor (EC 3.4.24.61)
           (N-arginine dibasic convertase) {Homo sapiens}
          Length = 356

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +1

Query: 484 VKQFHNSTIRFPLPKRVHHYK 546
           +KQ HN T+ +P+   +HHY+
Sbjct: 44  IKQGHNLTVSWPVTPSIHHYE 64


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,459,477
Number of Sequences: 28952
Number of extensions: 258970
Number of successful extensions: 620
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)