Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_P10
(654 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q5UAT5 Cluster: 60S ribosomal protein L6; n=15; Bilater... 334 1e-90
UniRef50_Q9V9W3 Cluster: 60S ribosomal protein L6; n=6; Metazoa|... 180 4e-44
UniRef50_Q02878 Cluster: 60S ribosomal protein L6; n=71; Euteleo... 156 4e-37
UniRef50_Q6B8B0 Cluster: 60S ribosomal protein L6; n=1; Ixodes p... 147 2e-34
UniRef50_A7S4S4 Cluster: Predicted protein; n=5; Eukaryota|Rep: ... 137 2e-31
UniRef50_A7L698 Cluster: 60S ribosomal protein L6; n=1; Artemia ... 124 1e-27
UniRef50_Q5DE99 Cluster: 60S ribosomal protein L6; n=1; Schistos... 113 3e-24
UniRef50_A3F4R4 Cluster: 60S ribosomal protein L6; n=1; Taenia a... 106 5e-22
UniRef50_Q7XY83 Cluster: 60S ribosomal protein L6; n=1; Griffith... 102 7e-21
UniRef50_Q9C9C6 Cluster: 60S ribosomal protein L6-2; n=11; Eukar... 99 1e-19
UniRef50_Q54D63 Cluster: 60S ribosomal protein L6; n=2; Eukaryot... 92 9e-18
UniRef50_P47991 Cluster: 60S ribosomal protein L6; n=2; Caenorha... 92 9e-18
UniRef50_Q01IK4 Cluster: 60S ribosomal protein L6; n=17; Eukaryo... 88 2e-16
UniRef50_Q5CM54 Cluster: 60S ribosomal protein L6; n=2; Cryptosp... 88 2e-16
UniRef50_Q4N3I8 Cluster: 60S ribosomal protein L6e, putative; n=... 88 2e-16
UniRef50_Q1DRV0 Cluster: 60S ribosomal protein L6; n=15; Pezizom... 86 6e-16
UniRef50_Q02326 Cluster: 60S ribosomal protein L6-A; n=16; Dikar... 79 1e-13
UniRef50_Q7SH22 Cluster: 60S ribosomal protein L6; n=2; Sordaria... 77 4e-13
UniRef50_A0CYT3 Cluster: 60S ribosomal protein L6; n=5; Oligohym... 75 2e-12
UniRef50_Q4X638 Cluster: 60S ribosomal subunit protein L6e, puta... 73 5e-12
UniRef50_UPI0000DA1E66 Cluster: PREDICTED: similar to ribosomal ... 72 1e-11
UniRef50_UPI0000DC20AA Cluster: UPI0000DC20AA related cluster; n... 68 2e-10
UniRef50_Q4Q4D3 Cluster: 60S ribosomal protein L6, putative; n=1... 62 1e-08
UniRef50_A5C5P0 Cluster: 60S ribosomal protein L6; n=1; Vitis vi... 60 3e-08
UniRef50_A2EBD1 Cluster: 60S ribosomal protein L6, putative; n=7... 55 2e-06
UniRef50_A0N0S1 Cluster: 60S ribosomal protein L6; n=1; Strongyl... 51 2e-05
UniRef50_Q8SR91 Cluster: 60S RIBOSOMAL PROTEIN L6; n=1; Encephal... 48 1e-04
UniRef50_Q98RL7 Cluster: 60S ribosomal protein L6B; n=1; Guillar... 44 0.003
UniRef50_Q8U2L5 Cluster: 50S ribosomal protein L14e; n=5; Archae... 41 0.030
UniRef50_A7QIH5 Cluster: Chromosome chr12 scaffold_103, whole ge... 40 0.039
UniRef50_Q7QVA1 Cluster: 60S ribosomal protein L27; n=1; Giardia... 40 0.052
UniRef50_P54054 Cluster: 50S ribosomal protein L14e; n=8; Euryar... 40 0.069
UniRef50_Q8ZYB4 Cluster: 50S ribosomal protein L14e; n=14; Archa... 38 0.16
UniRef50_A2RKU3 Cluster: Cation-transporting ATPase; n=2; Lactoc... 36 0.85
UniRef50_Q7UL14 Cluster: Putative uncharacterized protein; n=2; ... 34 2.6
UniRef50_Q4ZTN3 Cluster: Sensor protein; n=5; Pseudomonas|Rep: S... 34 3.4
UniRef50_A7ET80 Cluster: Putative uncharacterized protein; n=1; ... 34 3.4
UniRef50_Q5KML3 Cluster: VpsB, putative; n=2; Basidiomycota|Rep:... 33 4.5
UniRef50_Q7NID4 Cluster: Gll2249 protein; n=8; Cyanobacteria|Rep... 33 7.9
>UniRef50_Q5UAT5 Cluster: 60S ribosomal protein L6; n=15;
Bilateria|Rep: 60S ribosomal protein L6 - Bombyx mori
(Silk moth)
Length = 273
Score = 334 bits (821), Expect = 1e-90
Identities = 160/171 (93%), Positives = 160/171 (93%)
Frame = +1
Query: 100 STKKPRNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGT 279
STKKPRNYDLGNGVMRFSKSKMFHKKAKYKFIG LTVVVKQIGGEKNGGT
Sbjct: 25 STKKPRNYDLGNGVMRFSKSKMFHKKAKYKFIGKKNPKPEKPKKLTVVVKQIGGEKNGGT 84
Query: 280 RTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVG 459
RTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVG
Sbjct: 85 RTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVG 144
Query: 460 ILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYF 612
ILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYF
Sbjct: 145 ILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYF 195
>UniRef50_Q9V9W3 Cluster: 60S ribosomal protein L6; n=6;
Metazoa|Rep: 60S ribosomal protein L6 - Drosophila
melanogaster (Fruit fly)
Length = 262
Score = 180 bits (437), Expect = 4e-44
Identities = 89/169 (52%), Positives = 113/169 (66%)
Frame = +1
Query: 106 KKPRNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGTRT 285
K P N L G++R+SK++M+ ++A Y+ VK+IGG KNGG RT
Sbjct: 19 KHPVNSYLKGGILRYSKAQMYKRRALYRLKDKKSPVVEKAKVPIKKVKKIGGPKNGGERT 78
Query: 286 VPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGIL 465
V LK+ K+ YPT+ ++ FS+H R R NL GTV ILLAGRH GKRVVL+ +L
Sbjct: 79 VFLKKSKASYPTKTFVKKRPSKANFSEHKRNTRRNLTPGTVLILLAGRHQGKRVVLLKVL 138
Query: 466 PSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYF 612
SGLLLVTGPFA NSCPLRR+ QRYVIGTS+++ LG FK+P+H ND YF
Sbjct: 139 ASGLLLVTGPFALNSCPLRRVSQRYVIGTSSKVDLGAFKVPEHLNDAYF 187
>UniRef50_Q02878 Cluster: 60S ribosomal protein L6; n=71;
Euteleostomi|Rep: 60S ribosomal protein L6 - Homo
sapiens (Human)
Length = 288
Score = 156 bits (379), Expect = 4e-37
Identities = 80/172 (46%), Positives = 106/172 (61%), Gaps = 6/172 (3%)
Frame = +1
Query: 115 RNYDLGNGVMRFSKSKMFHKKA----KYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGTR 282
RN L G+ R+S+S M+ +KA KY L V K +GG+KNGGTR
Sbjct: 46 RNPVLVRGIGRYSRSAMYSRKAMYKRKYSAAKSKVEKKKKEKVLATVTKPVGGDKNGGTR 105
Query: 283 TVPLKRRKSFYPTQEKIRA--SSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLV 456
V L++ +YPT++ R S G +PFS+HVR++R ++ GT+ I+L GRH GKRVV +
Sbjct: 106 VVKLRKMPRYYPTEDVPRKLLSHGKKPFSQHVRKLRASITPGTILIILTGRHRGKRVVFL 165
Query: 457 GILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYF 612
L SGLLLVTGP N PLRR Q++VI TST+I + N K+PKH D YF
Sbjct: 166 KQLASGLLLVTGPLVLNRVPLRRTHQKFVIATSTKIDISNVKIPKHLTDAYF 217
>UniRef50_Q6B8B0 Cluster: 60S ribosomal protein L6; n=1; Ixodes
pacificus|Rep: 60S ribosomal protein L6 - Ixodes
pacificus (western blacklegged tick)
Length = 268
Score = 147 bits (357), Expect = 2e-34
Identities = 77/169 (45%), Positives = 103/169 (60%), Gaps = 2/169 (1%)
Frame = +1
Query: 112 PRNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGTRTVP 291
P+N+ L GV FS+SKMFHK+ +K V VK++ GEKNGG R +P
Sbjct: 25 PKNHKLPGGVWLFSRSKMFHKRGLFKVKHAAPTKEKRKRKKRVTVKRVKGEKNGGKRVLP 84
Query: 292 LKRRKSFYPTQE--KIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGIL 465
LK+ + YPT++ + + +S +P S+ +R + GTV ILLAG H GKRVV + L
Sbjct: 85 LKKERRSYPTEDSPQHKRTSHMKPSSRTRVALRKRITPGTVLILLAGPHRGKRVVFLKQL 144
Query: 466 PSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYF 612
+GLL VTGP+ N CPLRRI Q YVI TST++ L KLP+ +D YF
Sbjct: 145 KTGLLPVTGPYGVNGCPLRRINQIYVIATSTKLDLSKVKLPEGLDDRYF 193
>UniRef50_A7S4S4 Cluster: Predicted protein; n=5; Eukaryota|Rep:
Predicted protein - Nematostella vectensis
Length = 244
Score = 137 bits (331), Expect = 2e-31
Identities = 78/168 (46%), Positives = 102/168 (60%), Gaps = 2/168 (1%)
Frame = +1
Query: 115 RNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGTRTVPL 294
RN +L G+ R+S+S ++ K+A YK T K IGG+KNGG R VP+
Sbjct: 11 RNPELAPGISRYSRSAIYKKRALYKRKKTGVKKVVQDEPRTKT-KDIGGDKNGGKRVVPV 69
Query: 295 KRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSG 474
+R +YPT++ +R R + ++R ++ GTV ILLAG H GKRVV + L SG
Sbjct: 70 QRESRYYPTED-VRRRLANRK-KPGMAKLRSSITPGTVLILLAGAHRGKRVVFLKQLNSG 127
Query: 475 LLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKH-FNDD-YF 612
LLLVTGPF N PLRRIPQ YVI TST I + + KLP+H F D+ YF
Sbjct: 128 LLLVTGPFKINGVPLRRIPQSYVIATSTHIDVSDVKLPEHAFADESYF 175
>UniRef50_A7L698 Cluster: 60S ribosomal protein L6; n=1; Artemia
franciscana|Rep: 60S ribosomal protein L6 - Artemia
sanfranciscana (Brine shrimp) (Artemia franciscana)
Length = 241
Score = 124 bits (300), Expect = 1e-27
Identities = 62/125 (49%), Positives = 83/125 (66%)
Frame = +1
Query: 238 VVVKQIGGEKNGGTRTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCIL 417
V+ K+IGG+KNGGTR V ++ FYP + + +K+ +IR +L+ GT+ IL
Sbjct: 44 VIEKKIGGDKNGGTRLVSTRKPPQFYPINSRQKRFHRRLVNNKNPPKIRKSLQPGTILIL 103
Query: 418 LAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHF 597
LAG + GKRVVL+ L SGLLLV+GP N PLRR+ Q+ VI TSTRI + N K+P+H
Sbjct: 104 LAGVNRGKRVVLLKALKSGLLLVSGPLKVNRVPLRRVHQKLVIATSTRIDISNVKVPEHI 163
Query: 598 NDDYF 612
ND YF
Sbjct: 164 NDTYF 168
>UniRef50_Q5DE99 Cluster: 60S ribosomal protein L6; n=1; Schistosoma
japonicum|Rep: 60S ribosomal protein L6 - Schistosoma
japonicum (Blood fluke)
Length = 238
Score = 113 bits (273), Expect = 3e-24
Identities = 59/111 (53%), Positives = 74/111 (66%), Gaps = 3/111 (2%)
Frame = +1
Query: 289 PLKRRKSFYPTQE---KIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVG 459
P R Y TQ+ K+R + FS HVR+IR +++ GTV ILLAG H GKRV+ +
Sbjct: 55 PKTRFPRSYVTQQGKRKLRLRRA-KCFSNHVRKIRSSIQPGTVLILLAGPHKGKRVIFLK 113
Query: 460 ILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYF 612
L SGLLLVTGPF +N PLRR+ Q YVI TSTRI + F +PKH +D+YF
Sbjct: 114 ALKSGLLLVTGPFKYNGVPLRRVNQCYVIATSTRIDISKFDVPKHIDDEYF 164
>UniRef50_A3F4R4 Cluster: 60S ribosomal protein L6; n=1; Taenia
asiatica|Rep: 60S ribosomal protein L6 - Taenia asiatica
(Asian tapeworm)
Length = 212
Score = 106 bits (254), Expect = 5e-22
Identities = 50/85 (58%), Positives = 60/85 (70%)
Frame = +1
Query: 358 FSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQR 537
F+ H RRIR ++ G V ILLAGRH KRVV + L SGLLLVTGPF +N PLRR+ QR
Sbjct: 86 FADHRRRIRKSITPGKVLILLAGRHRAKRVVFLKSLASGLLLVTGPFKYNGVPLRRVNQR 145
Query: 538 YVIGTSTRISLGNFKLPKHFNDDYF 612
YVI T TRI + N K+P ND++F
Sbjct: 146 YVIATKTRIKIKNIKIPSQLNDEFF 170
>UniRef50_Q7XY83 Cluster: 60S ribosomal protein L6; n=1; Griffithsia
japonica|Rep: 60S ribosomal protein L6 - Griffithsia
japonica (Red alga)
Length = 216
Score = 102 bits (245), Expect = 7e-21
Identities = 56/127 (44%), Positives = 76/127 (59%)
Frame = +1
Query: 232 LTVVVKQIGGEKNGGTRTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVC 411
+ ++ K IGG KNGG R VP K+ +YP +K + K + +RP++K GT+
Sbjct: 20 IKMIKKPIGGAKNGGYRLVPEKKGPKWYPADDKKTPVPSRKNVHKPTK-LRPSIKSGTIV 78
Query: 412 ILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPK 591
ILLAG G RVV++ L SG LLVTGP+A N PL R+ QRYVI TST I + + K
Sbjct: 79 ILLAGVFRGSRVVVLKQLDSGQLLVTGPYAVNRIPLTRVDQRYVIATSTSIDVSKVDV-K 137
Query: 592 HFNDDYF 612
++ YF
Sbjct: 138 KIDNAYF 144
>UniRef50_Q9C9C6 Cluster: 60S ribosomal protein L6-2; n=11;
Eukaryota|Rep: 60S ribosomal protein L6-2 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 233
Score = 98.7 bits (235), Expect = 1e-19
Identities = 63/171 (36%), Positives = 91/171 (53%)
Frame = +1
Query: 100 STKKPRNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGT 279
+ K RN DL GV ++S+S+M+HK+ + + V
Sbjct: 7 TAKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKV------------ 54
Query: 280 RTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVG 459
P+++ FYP ++ ++ R +K + +R ++ GTV I+LAGR GKRVV +
Sbjct: 55 -DAPVEKPPKFYPAED-VKKPLPNRRTAKPAK-LRASITPGTVLIILAGRFKGKRVVFLK 111
Query: 460 ILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYF 612
L SGLLLVTGPF N PLRR+ Q YVIGTST++ + L K F+D YF
Sbjct: 112 QLASGLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDK-FDDKYF 161
>UniRef50_Q54D63 Cluster: 60S ribosomal protein L6; n=2;
Eukaryota|Rep: 60S ribosomal protein L6 - Dictyostelium
discoideum AX4
Length = 236
Score = 92.3 bits (219), Expect = 9e-18
Identities = 51/113 (45%), Positives = 68/113 (60%)
Frame = +1
Query: 274 GTRTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVL 453
G R + K K +IR+++ + K +R ++ GTV I+LAGR AGKRVV
Sbjct: 54 GKRVIAAKASKFAPSIPAEIRSTAAKKVQQKVA--LRKSITPGTVLIILAGRFAGKRVVA 111
Query: 454 VGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYF 612
+ L SGL+L+TGPF N PLRRI QRYVI TST+I + + K+ ND YF
Sbjct: 112 LKQLDSGLILITGPFKVNGVPLRRIDQRYVIATSTKIDVSSVKVAATINDAYF 164
>UniRef50_P47991 Cluster: 60S ribosomal protein L6; n=2;
Caenorhabditis|Rep: 60S ribosomal protein L6 -
Caenorhabditis elegans
Length = 217
Score = 92.3 bits (219), Expect = 9e-18
Identities = 45/79 (56%), Positives = 56/79 (70%), Gaps = 1/79 (1%)
Frame = +1
Query: 379 IRPNLKIGTVCILLAGRHAGKRVVLVGILP-SGLLLVTGPFAFNSCPLRRIPQRYVIGTS 555
+R L GTV I+LAGRH GKRVV + LP SGLLLVTGP N PLRRI Q +VI TS
Sbjct: 67 LRKTLTPGTVLIVLAGRHKGKRVVFLKQLPQSGLLLVTGPHKINGFPLRRIGQAFVIATS 126
Query: 556 TRISLGNFKLPKHFNDDYF 612
++++ K+P+H ND+YF
Sbjct: 127 LKVNVSGVKIPEHINDEYF 145
>UniRef50_Q01IK4 Cluster: 60S ribosomal protein L6; n=17;
Eukaryota|Rep: 60S ribosomal protein L6 - Oryza sativa
(Rice)
Length = 222
Score = 87.8 bits (208), Expect = 2e-16
Identities = 49/102 (48%), Positives = 64/102 (62%), Gaps = 1/102 (0%)
Frame = +1
Query: 310 FYPTQE-KIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLV 486
FYP + K R S +P + ++R ++ GTV ILLAGR GKRVV + L SGLLLV
Sbjct: 53 FYPADDVKPRQPSTRKP---NPTKLRSSITPGTVLILLAGRFMGKRVVFLKQLKSGLLLV 109
Query: 487 TGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYF 612
TGPF N P+RR+ Q YVI TST++ + + K F+D YF
Sbjct: 110 TGPFKINGVPIRRVNQPYVIATSTKVDISGVNVEK-FDDKYF 150
>UniRef50_Q5CM54 Cluster: 60S ribosomal protein L6; n=2;
Cryptosporidium|Rep: 60S ribosomal protein L6 -
Cryptosporidium hominis
Length = 184
Score = 87.8 bits (208), Expect = 2e-16
Identities = 43/93 (46%), Positives = 61/93 (65%)
Frame = +1
Query: 334 RASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSC 513
R S R S ++R +L+ G VCILLAG + GKRVV++ LPSGL++VTGP+A N
Sbjct: 20 RKYSSRRKASVVAPKLRSSLQPGVVCILLAGPYKGKRVVMLKALPSGLVVVTGPYALNGV 79
Query: 514 PLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYF 612
P+RR+ Y+I TST++ + + K F D+YF
Sbjct: 80 PVRRVNPAYIIATSTKVDVSKADVSK-FTDEYF 111
>UniRef50_Q4N3I8 Cluster: 60S ribosomal protein L6e, putative; n=3;
Piroplasmida|Rep: 60S ribosomal protein L6e, putative -
Theileria parva
Length = 212
Score = 87.8 bits (208), Expect = 2e-16
Identities = 48/93 (51%), Positives = 61/93 (65%)
Frame = +1
Query: 286 VPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGIL 465
V L RRK+ K + GR ++ V ++R +LK G V ILL G + GKRVVL+ +L
Sbjct: 12 VKLNRRKTVVTRLGKTKVV--GRKYAS-VPKVRESLKPGAVLILLTGSYKGKRVVLLKVL 68
Query: 466 PSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRI 564
SGLLLVTGPF+FN PLRR+ RYVI TST +
Sbjct: 69 KSGLLLVTGPFSFNGVPLRRVNSRYVIATSTNV 101
>UniRef50_Q1DRV0 Cluster: 60S ribosomal protein L6; n=15;
Pezizomycotina|Rep: 60S ribosomal protein L6 -
Coccidioides immitis
Length = 206
Score = 86.2 bits (204), Expect = 6e-16
Identities = 48/116 (41%), Positives = 70/116 (60%), Gaps = 4/116 (3%)
Frame = +1
Query: 235 TVVVKQIGGEKN--GGTRTVPLKRRKS--FYPTQEKIRASSGGRPFSKHVRRIRPNLKIG 402
T+ K +G K G R +P +K+ +YP ++ + + + H ++RP+L+ G
Sbjct: 4 TLDSKSVGQTKKFGKGERVIPHPSQKAQKWYPADDEPQPKKARK--TAHPTKLRPSLQPG 61
Query: 403 TVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISL 570
T+ ILLAGR GKRV+L+ L G+LLVTGPF N PLRR+ RYVI TS+ + L
Sbjct: 62 TILILLAGRFRGKRVILLKHLGQGVLLVTGPFKLNGVPLRRVNARYVIATSSTVDL 117
>UniRef50_Q02326 Cluster: 60S ribosomal protein L6-A; n=16;
Dikarya|Rep: 60S ribosomal protein L6-A - Saccharomyces
cerevisiae (Baker's yeast)
Length = 176
Score = 78.6 bits (185), Expect = 1e-13
Identities = 44/106 (41%), Positives = 66/106 (62%)
Frame = +1
Query: 295 KRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSG 474
++ +YP+++ + A R ++ +++R +L GTV ILLAGR GKRVV + L
Sbjct: 4 QKAPKWYPSED-VAALKKTRKAARP-QKLRASLVPGTVLILLAGRFRGKRVVYLKHLEDN 61
Query: 475 LLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYF 612
LL++GPF N PLRR+ RYVI TST++S+ + K FN +YF
Sbjct: 62 TLLISGPFKVNGVPLRRVNARYVIATSTKVSVEGVNVEK-FNVEYF 106
>UniRef50_Q7SH22 Cluster: 60S ribosomal protein L6; n=2;
Sordariaceae|Rep: 60S ribosomal protein L6 - Neurospora
crassa
Length = 207
Score = 77.0 bits (181), Expect = 4e-13
Identities = 41/75 (54%), Positives = 48/75 (64%), Gaps = 2/75 (2%)
Frame = +1
Query: 352 RPFSKHVRRIRPNLKI--GTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRR 525
RP K +R P + GTV ILLAGR GKRVVL+ L G+LLVTGPF N PLRR
Sbjct: 24 RPVRKTIRPWSPRSTLVPGTVLILLAGRFRGKRVVLLKALDQGVLLVTGPFKINGVPLRR 83
Query: 526 IPQRYVIGTSTRISL 570
+ RYVI TS ++ L
Sbjct: 84 VNARYVIATSQKVDL 98
>UniRef50_A0CYT3 Cluster: 60S ribosomal protein L6; n=5;
Oligohymenophorea|Rep: 60S ribosomal protein L6 -
Paramecium tetraurelia
Length = 208
Score = 74.5 bits (175), Expect = 2e-12
Identities = 44/94 (46%), Positives = 55/94 (58%)
Frame = +1
Query: 331 IRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNS 510
+R RP + +R+I P G V ILL+GR GKRVV + L SGLLLVTGPF N
Sbjct: 44 VRKRKAPRPAT--LRKIVP----GQVLILLSGRFQGKRVVFLKQLKSGLLLVTGPFKING 97
Query: 511 CPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYF 612
PL+R+ YVI TST++ + NDDYF
Sbjct: 98 VPLKRVNSAYVIPTSTKVDVTGVN-ANQINDDYF 130
>UniRef50_Q4X638 Cluster: 60S ribosomal subunit protein L6e,
putative; n=5; Plasmodium|Rep: 60S ribosomal subunit
protein L6e, putative - Plasmodium chabaudi
Length = 241
Score = 73.3 bits (172), Expect = 5e-12
Identities = 44/115 (38%), Positives = 64/115 (55%), Gaps = 7/115 (6%)
Frame = +1
Query: 241 VVKQIGGEKNGGTRTVPLKRRKSFYPTQEK--IRASSGGRPFS---KHV--RRIRPNLKI 399
VV G +KN V ++K P + K I GR + K V R++R ++++
Sbjct: 17 VVPATGDKKNALKHYVIKGQKKILTPVRAKKTISKKHYGRKLASKKKFVVQRKMRSSIQV 76
Query: 400 GTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRI 564
G V I+L G+H GKR ++ +L SGLL V GP+ N PL+R+ RY+I TST I
Sbjct: 77 GKVAIILTGKHMGKRCIIAKVLKSGLLAVVGPYEVNGVPLKRVDPRYLIVTSTNI 131
>UniRef50_UPI0000DA1E66 Cluster: PREDICTED: similar to ribosomal
protein L6; n=5; Eutheria|Rep: PREDICTED: similar to
ribosomal protein L6 - Rattus norvegicus
Length = 112
Score = 71.7 bits (168), Expect = 1e-11
Identities = 37/70 (52%), Positives = 43/70 (61%)
Frame = +1
Query: 403 TVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFK 582
TV I+L GRH GKRVV + L SGLLLVTGP A N PL R+ Q VI T T++ + K
Sbjct: 13 TVLIILTGRHRGKRVVFLKQLGSGLLLVTGPLALNRVPLCRMHQSVVISTFTKVDICKVK 72
Query: 583 LPKHFNDDYF 612
KH D F
Sbjct: 73 TSKHLTDASF 82
>UniRef50_UPI0000DC20AA Cluster: UPI0000DC20AA related cluster; n=2;
Rattus norvegicus|Rep: UPI0000DC20AA UniRef100 entry -
Rattus norvegicus
Length = 261
Score = 68.1 bits (159), Expect = 2e-10
Identities = 49/151 (32%), Positives = 75/151 (49%)
Frame = +1
Query: 115 RNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGTRTVPL 294
RN L G R+S ++ +K Y + + V+K + G+KNGGT V L
Sbjct: 49 RNPILVRGTGRYSIKALYERK--YSAVKSKCEKKKKEKVVATVIKTVSGDKNGGTGVVKL 106
Query: 295 KRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSG 474
++ K + + + + S P KH + + N TV I++ G+H +RVV + L G
Sbjct: 107 QKMKMYLGSCKAMAKS----PAFKHEKAVC-NSTPETVLIIITGQH--RRVVFLKQLSRG 159
Query: 475 LLLVTGPFAFNSCPLRRIPQRYVIGTSTRIS 567
LL+TGP A N L R Q+ V+ TST I+
Sbjct: 160 FLLITGPLALNLVLLYRTHQKSVVITSTTIN 190
>UniRef50_Q4Q4D3 Cluster: 60S ribosomal protein L6, putative; n=11;
Trypanosomatidae|Rep: 60S ribosomal protein L6, putative
- Leishmania major
Length = 195
Score = 62.1 bits (144), Expect = 1e-08
Identities = 29/67 (43%), Positives = 44/67 (65%), Gaps = 1/67 (1%)
Frame = +1
Query: 379 IRPNLKIGTVCILLAGRHAGKRVVLVGILP-SGLLLVTGPFAFNSCPLRRIPQRYVIGTS 555
+R + G + I+LAGR G+R V++ LP +G L+V+GP +N P+RRI RYVI TS
Sbjct: 29 LRKSCAPGAIAIILAGRFRGRRAVILKQLPHNGPLVVSGPMKYNGVPIRRIDSRYVIATS 88
Query: 556 TRISLGN 576
T + + +
Sbjct: 89 TTVDISS 95
>UniRef50_A5C5P0 Cluster: 60S ribosomal protein L6; n=1; Vitis
vinifera|Rep: 60S ribosomal protein L6 - Vitis vinifera
(Grape)
Length = 249
Score = 60.5 bits (140), Expect = 3e-08
Identities = 30/58 (51%), Positives = 38/58 (65%)
Frame = +1
Query: 439 KRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYF 612
KRVV + L SGLLL+TG F N PLRR+ Q YVI TST++ + + K F+D YF
Sbjct: 156 KRVVFLKQLSSGLLLITGSFKINGVPLRRVNQAYVIATSTKVDIPKVNVEK-FDDKYF 212
>UniRef50_A2EBD1 Cluster: 60S ribosomal protein L6, putative; n=7;
Trichomonas vaginalis G3|Rep: 60S ribosomal protein L6,
putative - Trichomonas vaginalis G3
Length = 151
Score = 54.8 bits (126), Expect = 2e-06
Identities = 27/63 (42%), Positives = 39/63 (61%)
Frame = +1
Query: 382 RPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTR 561
RP+LK+GTV I++ G H GKR V+V +G++ + GP P+ I Q Y+I TST
Sbjct: 53 RPSLKVGTVVIVVGGEHQGKRAVVVADQGAGIVKIAGPVV----PVNEISQDYLIATSTS 108
Query: 562 ISL 570
I +
Sbjct: 109 IEV 111
>UniRef50_A0N0S1 Cluster: 60S ribosomal protein L6; n=1;
Strongyloides papillosus|Rep: 60S ribosomal protein L6 -
Strongyloides papillosus
Length = 127
Score = 51.2 bits (117), Expect = 2e-05
Identities = 21/46 (45%), Positives = 29/46 (63%)
Frame = +1
Query: 475 LLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYF 612
L GPF+ N P+RRI Q++V+ TST+I + K+P DDYF
Sbjct: 10 LFTFLGPFSINGVPVRRIAQKFVLPTSTKIDVSGVKIPATMTDDYF 55
>UniRef50_Q8SR91 Cluster: 60S RIBOSOMAL PROTEIN L6; n=1;
Encephalitozoon cuniculi|Rep: 60S RIBOSOMAL PROTEIN L6 -
Encephalitozoon cuniculi
Length = 155
Score = 48.4 bits (110), Expect = 1e-04
Identities = 31/82 (37%), Positives = 45/82 (54%)
Frame = +1
Query: 325 EKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAF 504
EK +A + +P VRR +L G V ++L G A +RVV + L + L GP +
Sbjct: 10 EKYKARTARKP---RVRRT--DLVKGMVVVVLEGVFASRRVVYLKGLEDNIALCAGPKSI 64
Query: 505 NSCPLRRIPQRYVIGTSTRISL 570
N PL RI +RY++ TST + L
Sbjct: 65 NGIPLFRIDERYLLATSTVLDL 86
>UniRef50_Q98RL7 Cluster: 60S ribosomal protein L6B; n=1; Guillardia
theta|Rep: 60S ribosomal protein L6B - Guillardia theta
(Cryptomonas phi)
Length = 169
Score = 44.0 bits (99), Expect = 0.003
Identities = 25/74 (33%), Positives = 38/74 (51%)
Frame = +1
Query: 388 NLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRIS 567
+ KIG + I+ + GK+ V +G G LL++G FN +I +YV+ + +
Sbjct: 41 DFKIGDILIIKKRNNYGKKCVFLGHTDDGNLLLSGIMKFNGIGYLKIHWKYVVKSGVSLK 100
Query: 568 LGNFKLPKHFNDDY 609
NF L KH N DY
Sbjct: 101 GLNF-LTKHTNKDY 113
>UniRef50_Q8U2L5 Cluster: 50S ribosomal protein L14e; n=5;
Archaea|Rep: 50S ribosomal protein L14e - Pyrococcus
furiosus
Length = 83
Score = 40.7 bits (91), Expect = 0.030
Identities = 18/53 (33%), Positives = 33/53 (62%)
Frame = +1
Query: 385 PNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYV 543
P + +G + +++AGR AG++VV+V I+ +LVTG N RR+ +++
Sbjct: 2 PAIDVGRIAVVIAGRRAGQKVVVVDIIDKNFVLVTGA-GLNKVKRRRMNIKHI 53
>UniRef50_A7QIH5 Cluster: Chromosome chr12 scaffold_103, whole
genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr12 scaffold_103, whole genome shotgun
sequence - Vitis vinifera (Grape)
Length = 345
Score = 40.3 bits (90), Expect = 0.039
Identities = 36/125 (28%), Positives = 57/125 (45%), Gaps = 4/125 (3%)
Frame = +1
Query: 154 KSKMFHKK---AKYKFIGXXXXXXXXXXXLTVVVKQIG-GEKNGGTRTVPLKRRKSFYPT 321
++ HKK A+ FI L V+ + G K + ++ FYP
Sbjct: 151 RTSTLHKKIASARLDFIKLSGSENELEALLQVLEPSLAKGNKKKKVLSNTEEKLPRFYPA 210
Query: 322 QEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFA 501
+ ++ + +K ++ +R ++ GTV I+LAGR VV + L SGLLL+TG F
Sbjct: 211 DD-VKKPLINKHKAKPIK-LRASITPGTVLIILAGR-----VVFLKQLSSGLLLITGSFK 263
Query: 502 FNSCP 516
N P
Sbjct: 264 INDVP 268
>UniRef50_Q7QVA1 Cluster: 60S ribosomal protein L27; n=1; Giardia
lamblia ATCC 50803|Rep: 60S ribosomal protein L27 -
Giardia lamblia ATCC 50803
Length = 135
Score = 39.9 bits (89), Expect = 0.052
Identities = 17/29 (58%), Positives = 22/29 (75%)
Frame = +1
Query: 382 RPNLKIGTVCILLAGRHAGKRVVLVGILP 468
+P +K G VCI+L GRHAGK+ V+V LP
Sbjct: 3 QPIIKPGLVCIVLQGRHAGKKAVIVEALP 31
>UniRef50_P54054 Cluster: 50S ribosomal protein L14e; n=8;
Euryarchaeota|Rep: 50S ribosomal protein L14e -
Methanococcus jannaschii
Length = 80
Score = 39.5 bits (88), Expect = 0.069
Identities = 18/48 (37%), Positives = 27/48 (56%)
Frame = +1
Query: 385 PNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRI 528
P +++G VCI AGR AGK V+V IL ++V G C ++ +
Sbjct: 2 PAIEVGRVCIKTAGREAGKVCVIVDILDKNFVIVDGLVKRRRCNIKHL 49
>UniRef50_Q8ZYB4 Cluster: 50S ribosomal protein L14e; n=14;
Archaea|Rep: 50S ribosomal protein L14e - Pyrobaculum
aerophilum
Length = 103
Score = 38.3 bits (85), Expect = 0.16
Identities = 17/60 (28%), Positives = 32/60 (53%)
Frame = +1
Query: 391 LKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISL 570
+ IG V + + GR AG++ V+V I+ +++TGP RR+ ++ T +I +
Sbjct: 5 IDIGRVVVKVLGREAGRKAVVVDIVDENYVVITGPKPITGVKRRRVNINHIEPTDKKIDI 64
>UniRef50_A2RKU3 Cluster: Cation-transporting ATPase; n=2;
Lactococcus lactis subsp. cremoris|Rep:
Cation-transporting ATPase - Lactococcus lactis subsp.
cremoris (strain MG1363)
Length = 841
Score = 35.9 bits (79), Expect = 0.85
Identities = 16/44 (36%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
Frame = +1
Query: 442 RVVLVGILPSGLLLVTGPFAFNSCPLRRIPQR--YVIGTSTRIS 567
+++++GI+P +L++ F F+S L IPQR +IGT+ I+
Sbjct: 215 KIIVIGIIPISILVLLNQFVFSSLDLSVIPQRKTAIIGTAATIT 258
>UniRef50_Q7UL14 Cluster: Putative uncharacterized protein; n=2;
Bacteria|Rep: Putative uncharacterized protein -
Rhodopirellula baltica
Length = 84
Score = 34.3 bits (75), Expect = 2.6
Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 6/58 (10%)
Frame = -1
Query: 201 FANELVFSLLV--EHLGFGETHHSVAQIIVPRFFR----RFFLSHRTCRCGSRLGRRF 46
FA EL FS++ EH+G T + P+ FR RF + R+CR G+R RRF
Sbjct: 20 FAGEL-FSVIARCEHIGGPNTDVDRRAVFWPKIFRFAAGRFQSTFRSCRVGARYSRRF 76
>UniRef50_Q4ZTN3 Cluster: Sensor protein; n=5; Pseudomonas|Rep:
Sensor protein - Pseudomonas syringae pv. syringae
(strain B728a)
Length = 676
Score = 33.9 bits (74), Expect = 3.4
Identities = 19/53 (35%), Positives = 31/53 (58%)
Frame = +1
Query: 349 GRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFN 507
GR ++ R++RP LK+ + + G +A V G L +G+ L+T PFAF+
Sbjct: 617 GRQLAEIARQLRPELKV----LFITG-YAEHAAVRGGFLDTGMQLITKPFAFD 664
>UniRef50_A7ET80 Cluster: Putative uncharacterized protein; n=1;
Sclerotinia sclerotiorum 1980|Rep: Putative
uncharacterized protein - Sclerotinia sclerotiorum 1980
Length = 752
Score = 33.9 bits (74), Expect = 3.4
Identities = 18/44 (40%), Positives = 22/44 (50%)
Frame = +1
Query: 265 KNGGTRTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLK 396
K R LK SF P + + ASS GRP K +R+R LK
Sbjct: 128 KEDHNREEELKAMVSFMPHRPAVDASSSGRPMKKDSKRMRNGLK 171
>UniRef50_Q5KML3 Cluster: VpsB, putative; n=2; Basidiomycota|Rep:
VpsB, putative - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 686
Score = 33.5 bits (73), Expect = 4.5
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = -2
Query: 464 RIPTSTTLLPACLPARRMQTVPIFRLGRILRTCLLNGRPPDEARI 330
R+P+ L A L A R Q P ++ +++ T + NG PP+ AR+
Sbjct: 397 RVPSPNKLRLAILYALRYQKSPSAQIPQVVSTLISNGVPPERARL 441
>UniRef50_Q7NID4 Cluster: Gll2249 protein; n=8; Cyanobacteria|Rep:
Gll2249 protein - Gloeobacter violaceus
Length = 544
Score = 32.7 bits (71), Expect = 7.9
Identities = 20/56 (35%), Positives = 29/56 (51%)
Frame = +1
Query: 439 KRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDD 606
+ +V G + GL+L F S PL Q + +G +T +G LP+HFNDD
Sbjct: 41 QEIVTCGQVLKGLIL--NGLGFVSAPLYLFEQ-FFVGKATEHLIGPGVLPEHFNDD 93
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 633,691,265
Number of Sequences: 1657284
Number of extensions: 12629157
Number of successful extensions: 31642
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 30552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31587
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 49173558301
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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